Propagation of CcmR regulog to Gloeobacter violaceus PCC 7421
| Source regulog: | CcmR - Cyanobacteria |
| Regulator type: | Transcription factor |
| Regulator family: | LysR |
| Regulation mode: | repressor |
| Biological process: | Carbon dioxide fixation |
| Effector: | |
| Phylum: | Cyanobacteria |
| Propagated regulon: | |
| Target genome | Gloeobacter violaceus PCC 7421 |
| Orthologous TF(s) | gll1001 |
| Regulated genes | 3 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -34
Score: 5.2 Sequence: ATAGAACTATGTCTAT
Locus tag: gll1001
|
||||
| gll1001 | -34 | 5.2 | ATAGAACTATGTCTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccmR | ||||
| Ortholog function: Carbon assimilation transcriptional regulator, LysR family | ||||
| Cyanothece sp. PCC 7425 | Cyan7425_3855 | -93 | 5.9 | ATAGATTTTTGTCTAT |
| Gloeobacter violaceus PCC 7421 | gll1001 | -34 | 5.2 | ATAGAACTATGTCTAT |
| Nostoc sp. PCC 7120 | all0862 | -285 | 5.8 | ATAGATTTTTATCTAT |
| -146 | 5.8 | ATAGATTTTTATCTAT | ||
| -72 | 4.9 | CTAGTCTTATATCTAT | ||
| Synechococcus elongatus PCC 7942 | Synpcc7942_1310 | -34 | 5.7 | ATAGACTTAAATCTAT |
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0171 | -63 | 5 | ATTGACTCTAGTCTAT |
| Thermosynechococcus elongatus BP-1 | tlr2037 | -42 | 5.1 | ATAGAATTTCGTCTAT |
|
Position: -171
Score: 4.2 Sequence: ATAGATGAAAGTCGAT
Position: -139
Score: 5 Sequence: ATCTACTTTTATCTAT
Locus tag: gvip132
|
||||
| gvip132 | -171 | 4.2 | ATAGATGAAAGTCGAT | |
| -139 | 5 | ATCTACTTTTATCTAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ndhF3 | ||||
| Ortholog function: NADH dehydrogenase subunit F | ||||
| Cyanothece sp. ATCC 51142 | cce_0603 | -74 | 5.5 | ATAGACTTAATTCTAT |
| Cyanothece sp. PCC 8801 | PCC8801_4247 | -71 | 5.6 | ATAGACTAAAGTCTAT |
| -8 | 5 | ATTGTTATATGTCTAT | ||
| Gloeobacter violaceus PCC 7421 | gvip132 | -139 | 5 | ATCTACTTTTATCTAT |
| Microcystis aeruginosa NIES-843 | MAE_15120 | -71 | 4.9 | ATTGACTAGAATCTAT |
| Nostoc sp. PCC 7120 | alr4156 | -245 | 5.9 | ATAGATTTTTGTCTAT |
| Synechococcus sp. JA-3-3Ab | CYA_0640 | -107 | 5 | CTTGATTTTTGTCTAT |
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0172 | -63 | 5 | ATTGACTCTAGTCTAT |
| Synechocystis sp. PCC 6803 | sll1732 | -204 | 3.9 | ATTGTCGCTTGACTAT |
|
Position: -168
Score: 5.6 Sequence: ATAGATTAATATCTAT
Locus tag: gvip279
|
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| gvip279 | -168 | 5.6 | ATAGATTAATATCTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cmpA | ||||
| Ortholog function: Bicarbontate ABC transporter, substrate-binding protein | ||||
| Gloeobacter violaceus PCC 7421 | gvip279 | -168 | 5.6 | ATAGATTAATATCTAT |
| -136 | 5 | ATCGACTTTTCTCTAT | ||