Propagation of PedR regulog to Prochlorococcus marinus str. NATL2A
| Source regulog: | PedR - Cyanobacteria |
| Regulator type: | Transcription factor |
| Regulator family: | LuxR |
| Regulation mode: | repressor (activator) |
| Biological process: | Photosynthesis; Carbon fixation |
| Effector: | Trx, thioredoxin protein |
| Phylum: | Cyanobacteria |
| Propagated regulon: | |
| Target genome | Prochlorococcus marinus str. NATL2A |
| Orthologous TF(s) | PMN2A_1520 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -35
Score: 3.8 Sequence: AAGTAGTATTAATT
Locus tag: PMN2A_1520
|
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| PMN2A_1520 | -35 | 3.8 | AAGTAGTATTAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pedR | ||||
| Ortholog function: Thioredoxin status sensitive transcription regulator, LuxR family | ||||
| Cyanothece sp. ATCC 51142 | cce_4720 | -29 | 4.7 | AAGTAAATGTACTA |
| Cyanothece sp. PCC 7425 | Cyan7425_0293 | -28 | 4.3 | AAGTAATTGTACGG |
| Cyanothece sp. PCC 8801 | PCC8801_4139 | -28 | 4.7 | AAGTAAATGTACTA |
| Microcystis aeruginosa NIES-843 | MAE_54580 | -28 | 4.7 | AAGTAAATATACGA |
| Nostoc sp. PCC 7120 | asl2551 | -194 | 4.5 | AAGTATATTTAATT |
| -33 | 4.6 | AAGTACATATACCA | ||
| Prochlorococcus marinus str. MIT 9313 | PMT2014 | -366 | 3.7 | AAGTAAATCTGATT |
| Synechococcus elongatus PCC 7942 | Synpcc7942_2264 | -30 | 4.7 | AAGTACAAATACTT |
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0641 | -257 | 3.7 | AAGAAAGTTTATCT |
| Synechocystis sp. PCC 6803 | ssl0564 | -28 | 4.8 | GAGTAAATATACCT |
| Thermosynechococcus elongatus BP-1 | null | -22 | 4.6 | AAGTAATTATACGG |
| Trichodesmium erythraeum IMS101 | Tery_2735 | -34 | 5.2 | AAGCAAATATACTT |
|
Position: -189
Score: 3.6 Sequence: AAGCTAATTCACTA
Position: -152
Score: 4.1 Sequence: GAGTAAAAATACGC
Locus tag: PMN2A_1872
|
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| PMN2A_1872 | -189 | 3.6 | AAGCTAATTCACTA | |
| -152 | 4.1 | GAGTAAAAATACGC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: chlL | ||||
| Ortholog function: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | ||||
| Cyanothece sp. ATCC 51142 | cce_4532 | -155 | 4.3 | AAGCAATTTTTCTC |
| Cyanothece sp. PCC 8801 | PCC8801_0791 | -42 | 4.2 | AGGCAAATACACTT |
| Microcystis aeruginosa NIES-843 | MAE_16230 | -223 | 3.6 | AAGTAAATGTATAA |
| Synechocystis sp. PCC 6803 | slr0749 | -196 | 4.8 | AAGTAACTATACCC |
| -178 | 4 | AAGTTATTTTATTT | ||
|
Position: -222
Score: 3.6 Sequence: GCGTATTTTTACTC
Locus tag: PMN2A_1873
|
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| PMN2A_1873 | -222 | 3.6 | GCGTATTTTTACTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: chlN | ||||
| Ortholog function: Light-independent protochlorophyllide reductase subunit N | ||||
| Cyanothece sp. ATCC 51142 | cce_4534 | -365 | 4.9 | AAGTAAGTTTACCT |
| Cyanothece sp. PCC 8801 | PCC8801_0789 | -357 | 4.7 | AAGCAACTTTACCT |
| Nostoc sp. PCC 7120 | all5076 | -7 | 3.7 | AAGCAAAATGACCA |
| Synechocystis sp. PCC 6803 | slr0750 | -242 | 3.5 | AATTAAAATTAATC |
|
Position: -85
Score: 3.8 Sequence: AAGCAATAATTACT
Locus tag: PMN2A_0172
|
||||
| PMN2A_0172 | -85 | 3.8 | AAGCAATAATTACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rpe | ||||
| Ortholog function: Ribulose-phosphate 3-epimerase | ||||
| Cyanothece sp. PCC 7425 | Cyan7425_1996 | -14 | 3.9 | GAGGAACTTTACCT |
| Cyanothece sp. PCC 8801 | PCC8801_1619 | -275 | 3.6 | AAGCAGCTATTCTG |
| Nostoc sp. PCC 7120 | alr0782 | -263 | 4.2 | AAGCATCAATACCG |
| Synechococcus sp. JA-3-3Ab | CYA_0084 | -109 | 3.5 | AACCATATTTTCTC |
| Synechocystis sp. PCC 6803 | sll0807 | -27 | 3.5 | GAGTTGAAATACTT |