Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of PedR regulog to Cyanothece sp. ATCC 51142

Reference regulog properties
Source regulog: PedR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: repressor (activator)
Biological process: Photosynthesis; Carbon fixation
Effector: Trx, thioredoxin protein
Phylum: Cyanobacteria
Propagated regulon:
Target genome Cyanothece sp. ATCC 51142
Orthologous TF(s) cce_4720
Regulated genes 4
Built upon 56 sites [see more]
Predicted regulatory interactions in Cyanothece sp. ATCC 51142
Locus tag Position Score Sequence
Position: -346
Score: 3.5
Sequence: AACCAAAAATACAT
Position: -229
Score: 3.4
Sequence: ATGTAACATTATTT
Locus tag: cce_1954
cce_1954 -346 3.5 AACCAAAAATACAT
-229 3.4 ATGTAACATTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlB
Ortholog function: Light-independent protochlorophyllide reductase subunit B
Microcystis aeruginosa NIES-843 MAE_53860 -319 4.5 AAGCAAAATTACCG
Nostoc sp. PCC 7120 alr3441 -56 3.7 AAGCACTTATAGTC
Synechococcus sp. PCC 7002 SYNPCC7002_A1652 -14 4.6 GAGTAAAAATACCT
Synechocystis sp. PCC 6803 slr0772 -182 3.4 AAGCATTAAGAATT
Trichodesmium erythraeum IMS101 Tery_3812 -177 4.1 AGTTAAAAATACTT
Position: -19
Score: 4.2
Sequence: GAGTATTTATTCCT
Locus tag: cce_3522
cce_3522 -19 4.2 GAGTATTTATTCCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndhD
Ortholog function: NADH dehydrogenase subunit
Cyanothece sp. ATCC 51142 cce_3522 -19 4.2 GAGTATTTATTCCT
Synechococcus sp. PCC 7002 SYNPCC7002_A1973 -20 4.5 AAGTATTTTTTCCT
Position: -155
Score: 4.3
Sequence: AAGCAATTTTTCTC
Locus tag: cce_4532
cce_4532 -155 4.3 AAGCAATTTTTCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlL
Ortholog function: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
Cyanothece sp. ATCC 51142 cce_4532 -155 4.3 AAGCAATTTTTCTC
Cyanothece sp. PCC 8801 PCC8801_0791 -42 4.2 AGGCAAATACACTT
Microcystis aeruginosa NIES-843 MAE_16230 -223 3.6 AAGTAAATGTATAA
Synechocystis sp. PCC 6803 slr0749 -196 4.8 AAGTAACTATACCC
-178 4 AAGTTATTTTATTT
Position: -29
Score: 4.7
Sequence: AAGTAAATGTACTA
Locus tag: cce_4720
cce_4720 -29 4.7 AAGTAAATGTACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pedR
Ortholog function: Thioredoxin status sensitive transcription regulator, LuxR family
Cyanothece sp. ATCC 51142 cce_4720 -29 4.7 AAGTAAATGTACTA
Cyanothece sp. PCC 7425 Cyan7425_0293 -28 4.3 AAGTAATTGTACGG
Cyanothece sp. PCC 8801 PCC8801_4139 -28 4.7 AAGTAAATGTACTA
Microcystis aeruginosa NIES-843 MAE_54580 -28 4.7 AAGTAAATATACGA
Nostoc sp. PCC 7120 asl2551 -194 4.5 AAGTATATTTAATT
-33 4.6 AAGTACATATACCA
Prochlorococcus marinus str. MIT 9313 PMT2014 -366 3.7 AAGTAAATCTGATT
Synechococcus elongatus PCC 7942 Synpcc7942_2264 -30 4.7 AAGTACAAATACTT
Synechococcus sp. PCC 7002 SYNPCC7002_A0641 -257 3.7 AAGAAAGTTTATCT
Synechocystis sp. PCC 6803 ssl0564 -28 4.8 GAGTAAATATACCT
Thermosynechococcus elongatus BP-1 null -22 4.6 AAGTAATTATACGG
Trichodesmium erythraeum IMS101 Tery_2735 -34 5.2 AAGCAAATATACTT