Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of PedR regulog to Prochlorococcus marinus str. NATL1A

Reference regulog properties
Source regulog: PedR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: repressor (activator)
Biological process: Photosynthesis; Carbon fixation
Effector: Trx, thioredoxin protein
Phylum: Cyanobacteria
Propagated regulon:
Target genome Prochlorococcus marinus str. NATL1A
Orthologous TF(s) null
Regulated genes 4
Built upon 56 sites [see more]
Predicted regulatory interactions in Prochlorococcus marinus str. NATL1A
Locus tag Position Score Sequence
Position: -35
Score: 3.8
Sequence: AAGTAGTATTAATT
Locus tag: null
null -35 3.8 AAGTAGTATTAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pedR
Ortholog function: Thioredoxin status sensitive transcription regulator, LuxR family
Cyanothece sp. ATCC 51142 cce_4720 -29 4.7 AAGTAAATGTACTA
Cyanothece sp. PCC 7425 Cyan7425_0293 -28 4.3 AAGTAATTGTACGG
Cyanothece sp. PCC 8801 PCC8801_4139 -28 4.7 AAGTAAATGTACTA
Microcystis aeruginosa NIES-843 MAE_54580 -28 4.7 AAGTAAATATACGA
Nostoc sp. PCC 7120 asl2551 -194 4.5 AAGTATATTTAATT
-33 4.6 AAGTACATATACCA
Prochlorococcus marinus str. MIT 9313 PMT2014 -366 3.7 AAGTAAATCTGATT
Synechococcus elongatus PCC 7942 Synpcc7942_2264 -30 4.7 AAGTACAAATACTT
Synechococcus sp. PCC 7002 SYNPCC7002_A0641 -257 3.7 AAGAAAGTTTATCT
Synechocystis sp. PCC 6803 ssl0564 -28 4.8 GAGTAAATATACCT
Thermosynechococcus elongatus BP-1 null -22 4.6 AAGTAATTATACGG
Trichodesmium erythraeum IMS101 Tery_2735 -34 5.2 AAGCAAATATACTT
Position: -152
Score: 3.6
Sequence: GAGTAGAAATACGC
Position: -122
Score: 3.7
Sequence: ATGTATATATATTC
Locus tag: null
null -152 3.6 GAGTAGAAATACGC
-122 3.7 ATGTATATATATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlL
Ortholog function: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
Cyanothece sp. ATCC 51142 cce_4532 -155 4.3 AAGCAATTTTTCTC
Cyanothece sp. PCC 8801 PCC8801_0791 -42 4.2 AGGCAAATACACTT
Microcystis aeruginosa NIES-843 MAE_16230 -223 3.6 AAGTAAATGTATAA
Synechocystis sp. PCC 6803 slr0749 -196 4.8 AAGTAACTATACCC
-178 4 AAGTTATTTTATTT
Position: -317
Score: 3.5
Sequence: AGGCAAATATCTCT
Locus tag: null
null -317 3.5 AGGCAAATATCTCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlN
Ortholog function: Light-independent protochlorophyllide reductase subunit N
Cyanothece sp. ATCC 51142 cce_4534 -365 4.9 AAGTAAGTTTACCT
Cyanothece sp. PCC 8801 PCC8801_0789 -357 4.7 AAGCAACTTTACCT
Nostoc sp. PCC 7120 all5076 -7 3.7 AAGCAAAATGACCA
Synechocystis sp. PCC 6803 slr0750 -242 3.5 AATTAAAATTAATC
Position: -85
Score: 3.8
Sequence: AAGCAATAATTACT
Locus tag: null
null -85 3.8 AAGCAATAATTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpe
Ortholog function: Ribulose-phosphate 3-epimerase
Cyanothece sp. PCC 7425 Cyan7425_1996 -14 3.9 GAGGAACTTTACCT
Cyanothece sp. PCC 8801 PCC8801_1619 -275 3.6 AAGCAGCTATTCTG
Nostoc sp. PCC 7120 alr0782 -263 4.2 AAGCATCAATACCG
Synechococcus sp. JA-3-3Ab CYA_0084 -109 3.5 AACCATATTTTCTC
Synechocystis sp. PCC 6803 sll0807 -27 3.5 GAGTTGAAATACTT