Propagation of CcmR regulog to Synechococcus elongatus PCC 7942
| Source regulog: | CcmR - Cyanobacteria |
| Regulator type: | Transcription factor |
| Regulator family: | LysR |
| Regulation mode: | repressor |
| Biological process: | Carbon dioxide fixation |
| Effector: | |
| Phylum: | Cyanobacteria |
| Propagated regulon: | |
| Target genome | Synechococcus elongatus PCC 7942 |
| Orthologous TF(s) | Synpcc7942_1310 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -34
Score: 5.7 Sequence: ATAGACTTAAATCTAT
Locus tag: Synpcc7942_1310
|
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| Synpcc7942_1310 | -34 | 5.7 | ATAGACTTAAATCTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccmR | ||||
| Ortholog function: Carbon assimilation transcriptional regulator, LysR family | ||||
| Cyanothece sp. PCC 7425 | Cyan7425_3855 | -93 | 5.9 | ATAGATTTTTGTCTAT |
| Gloeobacter violaceus PCC 7421 | gll1001 | -34 | 5.2 | ATAGAACTATGTCTAT |
| Nostoc sp. PCC 7120 | all0862 | -285 | 5.8 | ATAGATTTTTATCTAT |
| -146 | 5.8 | ATAGATTTTTATCTAT | ||
| -72 | 4.9 | CTAGTCTTATATCTAT | ||
| Synechococcus elongatus PCC 7942 | Synpcc7942_1310 | -34 | 5.7 | ATAGACTTAAATCTAT |
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0171 | -63 | 5 | ATTGACTCTAGTCTAT |
| Thermosynechococcus elongatus BP-1 | tlr2037 | -42 | 5.1 | ATAGAATTTCGTCTAT |
|
Position: -207
Score: 4.6 Sequence: ATAGACAGGAATCTAT
Locus tag: Synpcc7942_1475
|
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| Synpcc7942_1475 | -207 | 4.6 | ATAGACAGGAATCTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sbtA | ||||
| Ortholog function: High-affinity, low-flux sodium dependent bicarbonate transporter | ||||
| Cyanothece sp. ATCC 51142 | cce_2939 | -181 | 4 | ATAGATCGATATATAT |
| Cyanothece sp. PCC 7425 | Cyan7425_5063 | -94 | 4.2 | TTTTACCTATGTCTAT |
| Cyanothece sp. PCC 8801 | PCC8801_1249 | -174 | 5.4 | ATAGATAAATGTCTAT |
| Microcystis aeruginosa NIES-843 | MAE_62090 | -196 | 4.7 | ATAGGTTTAAATCAAT |
| -111 | 4.9 | ATAGATTTATAACAAT | ||
| -80 | 5 | ATAAAGTTTTGTCTAT | ||
| Nostoc sp. PCC 7120 | all2134 | -191 | 4.6 | ATAGAATTTTGGCTCT |
| -173 | 4.8 | ATAAATATTGATCTAT | ||
| Synechococcus elongatus PCC 7942 | Synpcc7942_1475 | -207 | 4.6 | ATAGACAGGAATCTAT |
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0470 | -134 | 4.9 | ATAGAGCTAAATCTAT |
| Synechocystis sp. PCC 6803 | slr1512 | -182 | 4.7 | ATAGACTTTAGCTTAT |
| -136 | 5 | ATAGACAAGAGTCTAT | ||
|
Position: -186
Score: 4.9 Sequence: ATTGACTTAGCTCTAT
Locus tag: Synpcc7942_1488
|
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| Synpcc7942_1488 | -186 | 4.9 | ATTGACTTAGCTCTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cmpA | ||||
| Ortholog function: Bicarbontate ABC transporter, substrate-binding protein | ||||
| Cyanothece sp. ATCC 51142 | cce_0305 | -299 | 4.9 | ATAGATAAATACCTAT |
| Cyanothece sp. PCC 7425 | Cyan7425_4925 | -286 | 5.2 | ATAGACTTAGGGCTAT |
| Cyanothece sp. PCC 8801 | PCC8801_3521 | -268 | 4.5 | ATACATATTAAGCTAT |
| Microcystis aeruginosa NIES-843 | MAE_19990 | -104 | 4.6 | ATAGCTAAATTTCTAT |
| Synechococcus elongatus PCC 7942 | Synpcc7942_1488 | -186 | 4.9 | ATTGACTTAGCTCTAT |
| Synechococcus sp. JA-3-3Ab | CYA_0894 | -185 | 4.2 | ATAAACGGAAGTCTAT |
| -153 | 4.4 | ATTGTATTGTTTCTAT | ||
| Synechocystis sp. PCC 6803 | slr0040 | -208 | 4.5 | TTGGATATTTATCTAT |
| Thermosynechococcus elongatus BP-1 | null | -124 | 4.1 | ATAGATTGTTTGCAAT |