Propagation of CcmR regulog to Synechococcus elongatus PCC 7942

Reference regulog properties
Source regulog:	CcmR - Cyanobacteria
Regulator type:	Transcription factor
Regulator family:	LysR
Regulation mode:	repressor
Biological process:	Carbon dioxide fixation
Effector:
Phylum:	Cyanobacteria
Propagated regulon:
Target genome	Synechococcus elongatus PCC 7942
Orthologous TF(s)	Synpcc7942_1310
Regulated genes	4

Built upon 72 sites [see more]

Predicted regulatory interactions in *Synechococcus elongatus PCC 7942*
	Locus tag	Position	Score	Sequence
Position: -34 Score: 5.7 Sequence: ATAGACTTAAATCTAT Locus tag: Synpcc7942_1310
	Synpcc7942_1310	-34	5.7	ATAGACTTAAATCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmR
Ortholog function: Carbon assimilation transcriptional regulator, LysR family
Cyanothece sp. PCC 7425	Cyan7425_3855	-93	5.9	ATAGATTTTTGTCTAT
Gloeobacter violaceus PCC 7421	gll1001	-34	5.2	ATAGAACTATGTCTAT
Nostoc sp. PCC 7120	all0862	-285	5.8	ATAGATTTTTATCTAT
		-146	5.8	ATAGATTTTTATCTAT
		-72	4.9	CTAGTCTTATATCTAT
Synechococcus elongatus PCC 7942	Synpcc7942_1310	-34	5.7	ATAGACTTAAATCTAT
Synechococcus sp. PCC 7002	SYNPCC7002_A0171	-63	5	ATTGACTCTAGTCTAT
Thermosynechococcus elongatus BP-1	tlr2037	-42	5.1	ATAGAATTTCGTCTAT

Position: -207 Score: 4.6 Sequence: ATAGACAGGAATCTAT Locus tag: Synpcc7942_1475
	Synpcc7942_1475	-207	4.6	ATAGACAGGAATCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sbtA
Ortholog function: High-affinity, low-flux sodium dependent bicarbonate transporter
Cyanothece sp. ATCC 51142	cce_2939	-181	4	ATAGATCGATATATAT
Cyanothece sp. PCC 7425	Cyan7425_5063	-94	4.2	TTTTACCTATGTCTAT
Cyanothece sp. PCC 8801	PCC8801_1249	-174	5.4	ATAGATAAATGTCTAT
Microcystis aeruginosa NIES-843	MAE_62090	-196	4.7	ATAGGTTTAAATCAAT
		-111	4.9	ATAGATTTATAACAAT
		-80	5	ATAAAGTTTTGTCTAT
Nostoc sp. PCC 7120	all2134	-191	4.6	ATAGAATTTTGGCTCT
		-173	4.8	ATAAATATTGATCTAT
Synechococcus elongatus PCC 7942	Synpcc7942_1475	-207	4.6	ATAGACAGGAATCTAT
Synechococcus sp. PCC 7002	SYNPCC7002_A0470	-134	4.9	ATAGAGCTAAATCTAT
Synechocystis sp. PCC 6803	slr1512	-182	4.7	ATAGACTTTAGCTTAT
		-136	5	ATAGACAAGAGTCTAT

Position: -186 Score: 4.9 Sequence: ATTGACTTAGCTCTAT Locus tag: Synpcc7942_1488
	Synpcc7942_1488	-186	4.9	ATTGACTTAGCTCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cmpA
Ortholog function: Bicarbontate ABC transporter, substrate-binding protein
Cyanothece sp. ATCC 51142	cce_0305	-299	4.9	ATAGATAAATACCTAT
Cyanothece sp. PCC 7425	Cyan7425_4925	-286	5.2	ATAGACTTAGGGCTAT
Cyanothece sp. PCC 8801	PCC8801_3521	-268	4.5	ATACATATTAAGCTAT
Microcystis aeruginosa NIES-843	MAE_19990	-104	4.6	ATAGCTAAATTTCTAT
Synechococcus elongatus PCC 7942	Synpcc7942_1488	-186	4.9	ATTGACTTAGCTCTAT
Synechococcus sp. JA-3-3Ab	CYA_0894	-185	4.2	ATAAACGGAAGTCTAT
		-153	4.4	ATTGTATTGTTTCTAT
Synechocystis sp. PCC 6803	slr0040	-208	4.5	TTGGATATTTATCTAT
Thermosynechococcus elongatus BP-1	null	-124	4.1	ATAGATTGTTTGCAAT

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of CcmR regulog to Synechococcus elongatus PCC 7942

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --