Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of PedR regulog to Nodularia spumigena CCY9414

Reference regulog properties
Source regulog: PedR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: repressor (activator)
Biological process: Photosynthesis; Carbon fixation
Effector: Trx, thioredoxin protein
Phylum: Cyanobacteria
Propagated regulon:
Target genome Nodularia spumigena CCY9414
Orthologous TF(s) N9414_18178
Regulated genes 5
Built upon 56 sites [see more]
Predicted regulatory interactions in Nodularia spumigena CCY9414
Locus tag Position Score Sequence
Position: -42
Score: 3.9
Sequence: AAGCACTTATAGTT
Locus tag: N9414_06999
N9414_06999 -42 3.9 AAGCACTTATAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlB
Ortholog function: Light-independent protochlorophyllide reductase subunit B
Microcystis aeruginosa NIES-843 MAE_53860 -319 4.5 AAGCAAAATTACCG
Nostoc sp. PCC 7120 alr3441 -56 3.7 AAGCACTTATAGTC
Synechococcus sp. PCC 7002 SYNPCC7002_A1652 -14 4.6 GAGTAAAAATACCT
Synechocystis sp. PCC 6803 slr0772 -182 3.4 AAGCATTAAGAATT
Trichodesmium erythraeum IMS101 Tery_3812 -177 4.1 AGTTAAAAATACTT
Position: -195
Score: 3.7
Sequence: TAGTAAAATTACGC
Position: -113
Score: 3.6
Sequence: AAGAAAATATAGTC
Position: -33
Score: 4.6
Sequence: AAGTACATATACCA
Locus tag: N9414_18178
N9414_18178 -195 3.7 TAGTAAAATTACGC
-113 3.6 AAGAAAATATAGTC
-33 4.6 AAGTACATATACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pedR
Ortholog function: Thioredoxin status sensitive transcription regulator, LuxR family
Cyanothece sp. ATCC 51142 cce_4720 -29 4.7 AAGTAAATGTACTA
Cyanothece sp. PCC 7425 Cyan7425_0293 -28 4.3 AAGTAATTGTACGG
Cyanothece sp. PCC 8801 PCC8801_4139 -28 4.7 AAGTAAATGTACTA
Microcystis aeruginosa NIES-843 MAE_54580 -28 4.7 AAGTAAATATACGA
Nostoc sp. PCC 7120 asl2551 -194 4.5 AAGTATATTTAATT
-33 4.6 AAGTACATATACCA
Prochlorococcus marinus str. MIT 9313 PMT2014 -366 3.7 AAGTAAATCTGATT
Synechococcus elongatus PCC 7942 Synpcc7942_2264 -30 4.7 AAGTACAAATACTT
Synechococcus sp. PCC 7002 SYNPCC7002_A0641 -257 3.7 AAGAAAGTTTATCT
Synechocystis sp. PCC 6803 ssl0564 -28 4.8 GAGTAAATATACCT
Thermosynechococcus elongatus BP-1 null -22 4.6 AAGTAATTATACGG
Trichodesmium erythraeum IMS101 Tery_2735 -34 5.2 AAGCAAATATACTT
Position: -297
Score: 3.8
Sequence: AAGTATATACAGTT
Position: -215
Score: 3.6
Sequence: AATTAATAGTATTT
Locus tag: N9414_12963
N9414_12963 -297 3.8 AAGTATATACAGTT
-215 3.6 AATTAATAGTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlL
Ortholog function: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
Cyanothece sp. ATCC 51142 cce_4532 -155 4.3 AAGCAATTTTTCTC
Cyanothece sp. PCC 8801 PCC8801_0791 -42 4.2 AGGCAAATACACTT
Microcystis aeruginosa NIES-843 MAE_16230 -223 3.6 AAGTAAATGTATAA
Synechocystis sp. PCC 6803 slr0749 -196 4.8 AAGTAACTATACCC
-178 4 AAGTTATTTTATTT