Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of CcmR regulog to Nodularia spumigena CCY9414

Reference regulog properties
Source regulog: CcmR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: repressor
Biological process: Carbon dioxide fixation
Effector:
Phylum: Cyanobacteria
Propagated regulon:
Target genome Nodularia spumigena CCY9414
Orthologous TF(s) N9414_08540
Regulated genes 9
Built upon 72 sites [see more]
Predicted regulatory interactions in Nodularia spumigena CCY9414
Locus tag Position Score Sequence
Position: -146
Score: 5.4
Sequence: ATAGAGTTTTATCTAT
Locus tag: N9414_08540
N9414_08540 -146 5.4 ATAGAGTTTTATCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmR
Ortholog function: Carbon assimilation transcriptional regulator, LysR family
Cyanothece sp. PCC 7425 Cyan7425_3855 -93 5.9 ATAGATTTTTGTCTAT
Gloeobacter violaceus PCC 7421 gll1001 -34 5.2 ATAGAACTATGTCTAT
Nostoc sp. PCC 7120 all0862 -285 5.8 ATAGATTTTTATCTAT
-146 5.8 ATAGATTTTTATCTAT
-72 4.9 CTAGTCTTATATCTAT
Synechococcus elongatus PCC 7942 Synpcc7942_1310 -34 5.7 ATAGACTTAAATCTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A0171 -63 5 ATTGACTCTAGTCTAT
Thermosynechococcus elongatus BP-1 tlr2037 -42 5.1 ATAGAATTTCGTCTAT
Position: -203
Score: 4.7
Sequence: ATAGAGAAAATTCTAT
Locus tag: N9414_20320
N9414_20320 -203 4.7 ATAGAGAAAATTCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sbtA
Ortholog function: High-affinity, low-flux sodium dependent bicarbonate transporter
Cyanothece sp. ATCC 51142 cce_2939 -181 4 ATAGATCGATATATAT
Cyanothece sp. PCC 7425 Cyan7425_5063 -94 4.2 TTTTACCTATGTCTAT
Cyanothece sp. PCC 8801 PCC8801_1249 -174 5.4 ATAGATAAATGTCTAT
Microcystis aeruginosa NIES-843 MAE_62090 -196 4.7 ATAGGTTTAAATCAAT
-111 4.9 ATAGATTTATAACAAT
-80 5 ATAAAGTTTTGTCTAT
Nostoc sp. PCC 7120 all2134 -191 4.6 ATAGAATTTTGGCTCT
-173 4.8 ATAAATATTGATCTAT
Synechococcus elongatus PCC 7942 Synpcc7942_1475 -207 4.6 ATAGACAGGAATCTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A0470 -134 4.9 ATAGAGCTAAATCTAT
Synechocystis sp. PCC 6803 slr1512 -182 4.7 ATAGACTTTAGCTTAT
-136 5 ATAGACAAGAGTCTAT
Position: -78
Score: 4.2
Sequence: TTTGATTTTTGACTAA
Locus tag: N9414_05974
N9414_05974 -78 4.2 TTTGATTTTTGACTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mnhC
Ortholog function: Na/H antiporter, subunit C
Cyanothece sp. ATCC 51142 cce_1686 -232 4.5 ATAGTAATTAGCCTAT
-200 5 ATAGAATCTAGTCTAT
Cyanothece sp. PCC 7425 Cyan7425_3542 -121 4.7 ATTTATAAATATCTAT
Cyanothece sp. PCC 8801 PCC8801_2762 -56 4.8 ATAGGCTTTAAGCTAT
-24 4.7 ATAGTTTTTTGTATAT
Synechococcus sp. PCC 7002 SYNPCC7002_A2373 -123 5.2 ATAGATATTAAACTAT
Synechocystis sp. PCC 6803 slr2006 -125 3.8 ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803 slr2008 -125 3.8 ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803 slr2008 -107 4.3 ATTGTGATTGGTCTAT
Thermosynechococcus elongatus BP-1 tll1818 -219 5 ATTGATAAAAATCTAT
-193 4.4 ATTGACATTGATCTAA
Position: -230
Score: 5.1
Sequence: ATAGAGTATAATCTAT
Locus tag: N9414_15622
N9414_15622 -230 5.1 ATAGAGTATAATCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndhF3
Ortholog function: NADH dehydrogenase subunit F
Cyanothece sp. ATCC 51142 cce_0603 -74 5.5 ATAGACTTAATTCTAT
Cyanothece sp. PCC 8801 PCC8801_4247 -71 5.6 ATAGACTAAAGTCTAT
-8 5 ATTGTTATATGTCTAT
Gloeobacter violaceus PCC 7421 gvip132 -139 5 ATCTACTTTTATCTAT
Microcystis aeruginosa NIES-843 MAE_15120 -71 4.9 ATTGACTAGAATCTAT
Nostoc sp. PCC 7120 alr4156 -245 5.9 ATAGATTTTTGTCTAT
Synechococcus sp. JA-3-3Ab CYA_0640 -107 5 CTTGATTTTTGTCTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A0172 -63 5 ATTGACTCTAGTCTAT
Synechocystis sp. PCC 6803 sll1732 -204 3.9 ATTGTCGCTTGACTAT
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