Propagation of CcmR regulog to Nodularia spumigena CCY9414
| Source regulog: | CcmR - Cyanobacteria |
| Regulator type: | Transcription factor |
| Regulator family: | LysR |
| Regulation mode: | repressor |
| Biological process: | Carbon dioxide fixation |
| Effector: | |
| Phylum: | Cyanobacteria |
| Propagated regulon: | |
| Target genome | Nodularia spumigena CCY9414 |
| Orthologous TF(s) | N9414_08540 |
| Regulated genes | 9 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -146
Score: 5.4 Sequence: ATAGAGTTTTATCTAT
Locus tag: N9414_08540
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| N9414_08540 | -146 | 5.4 | ATAGAGTTTTATCTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccmR | ||||
| Ortholog function: Carbon assimilation transcriptional regulator, LysR family | ||||
| Cyanothece sp. PCC 7425 | Cyan7425_3855 | -93 | 5.9 | ATAGATTTTTGTCTAT |
| Gloeobacter violaceus PCC 7421 | gll1001 | -34 | 5.2 | ATAGAACTATGTCTAT |
| Nostoc sp. PCC 7120 | all0862 | -285 | 5.8 | ATAGATTTTTATCTAT |
| -146 | 5.8 | ATAGATTTTTATCTAT | ||
| -72 | 4.9 | CTAGTCTTATATCTAT | ||
| Synechococcus elongatus PCC 7942 | Synpcc7942_1310 | -34 | 5.7 | ATAGACTTAAATCTAT |
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0171 | -63 | 5 | ATTGACTCTAGTCTAT |
| Thermosynechococcus elongatus BP-1 | tlr2037 | -42 | 5.1 | ATAGAATTTCGTCTAT |
|
Position: -203
Score: 4.7 Sequence: ATAGAGAAAATTCTAT
Locus tag: N9414_20320
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| N9414_20320 | -203 | 4.7 | ATAGAGAAAATTCTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sbtA | ||||
| Ortholog function: High-affinity, low-flux sodium dependent bicarbonate transporter | ||||
| Cyanothece sp. ATCC 51142 | cce_2939 | -181 | 4 | ATAGATCGATATATAT |
| Cyanothece sp. PCC 7425 | Cyan7425_5063 | -94 | 4.2 | TTTTACCTATGTCTAT |
| Cyanothece sp. PCC 8801 | PCC8801_1249 | -174 | 5.4 | ATAGATAAATGTCTAT |
| Microcystis aeruginosa NIES-843 | MAE_62090 | -196 | 4.7 | ATAGGTTTAAATCAAT |
| -111 | 4.9 | ATAGATTTATAACAAT | ||
| -80 | 5 | ATAAAGTTTTGTCTAT | ||
| Nostoc sp. PCC 7120 | all2134 | -191 | 4.6 | ATAGAATTTTGGCTCT |
| -173 | 4.8 | ATAAATATTGATCTAT | ||
| Synechococcus elongatus PCC 7942 | Synpcc7942_1475 | -207 | 4.6 | ATAGACAGGAATCTAT |
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0470 | -134 | 4.9 | ATAGAGCTAAATCTAT |
| Synechocystis sp. PCC 6803 | slr1512 | -182 | 4.7 | ATAGACTTTAGCTTAT |
| -136 | 5 | ATAGACAAGAGTCTAT | ||
|
Position: -78
Score: 4.2 Sequence: TTTGATTTTTGACTAA
Locus tag: N9414_05974
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| N9414_05974 | -78 | 4.2 | TTTGATTTTTGACTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mnhC | ||||
| Ortholog function: Na/H antiporter, subunit C | ||||
| Cyanothece sp. ATCC 51142 | cce_1686 | -232 | 4.5 | ATAGTAATTAGCCTAT |
| -200 | 5 | ATAGAATCTAGTCTAT | ||
| Cyanothece sp. PCC 7425 | Cyan7425_3542 | -121 | 4.7 | ATTTATAAATATCTAT |
| Cyanothece sp. PCC 8801 | PCC8801_2762 | -56 | 4.8 | ATAGGCTTTAAGCTAT |
| -24 | 4.7 | ATAGTTTTTTGTATAT | ||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A2373 | -123 | 5.2 | ATAGATATTAAACTAT |
| Synechocystis sp. PCC 6803 | slr2006 | -125 | 3.8 | ATAGAATCTATGCAAT |
| Synechocystis sp. PCC 6803 | slr2008 | -125 | 3.8 | ATAGAATCTATGCAAT |
| Synechocystis sp. PCC 6803 | slr2008 | -107 | 4.3 | ATTGTGATTGGTCTAT |
| Thermosynechococcus elongatus BP-1 | tll1818 | -219 | 5 | ATTGATAAAAATCTAT |
| -193 | 4.4 | ATTGACATTGATCTAA | ||
|
Position: -230
Score: 5.1 Sequence: ATAGAGTATAATCTAT
Locus tag: N9414_15622
|
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| N9414_15622 | -230 | 5.1 | ATAGAGTATAATCTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ndhF3 | ||||
| Ortholog function: NADH dehydrogenase subunit F | ||||
| Cyanothece sp. ATCC 51142 | cce_0603 | -74 | 5.5 | ATAGACTTAATTCTAT |
| Cyanothece sp. PCC 8801 | PCC8801_4247 | -71 | 5.6 | ATAGACTAAAGTCTAT |
| -8 | 5 | ATTGTTATATGTCTAT | ||
| Gloeobacter violaceus PCC 7421 | gvip132 | -139 | 5 | ATCTACTTTTATCTAT |
| Microcystis aeruginosa NIES-843 | MAE_15120 | -71 | 4.9 | ATTGACTAGAATCTAT |
| Nostoc sp. PCC 7120 | alr4156 | -245 | 5.9 | ATAGATTTTTGTCTAT |
| Synechococcus sp. JA-3-3Ab | CYA_0640 | -107 | 5 | CTTGATTTTTGTCTAT |
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0172 | -63 | 5 | ATTGACTCTAGTCTAT |
| Synechocystis sp. PCC 6803 | sll1732 | -204 | 3.9 | ATTGTCGCTTGACTAT |