Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of PedR regulog to Cyanothece sp. PCC 7822

Reference regulog properties
Source regulog: PedR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: repressor (activator)
Biological process: Photosynthesis; Carbon fixation
Effector: Trx, thioredoxin protein
Phylum: Cyanobacteria
Propagated regulon:
Target genome Cyanothece sp. PCC 7822
Orthologous TF(s) Cyan7822DRAFT_5098
Regulated genes 6
Built upon 56 sites [see more]
Predicted regulatory interactions in Cyanothece sp. PCC 7822
Locus tag Position Score Sequence
Position: -157
Score: 4.9
Sequence: AAGTATTTATACTC
Position: -143
Score: 4.6
Sequence: AAGTAAATTTATCT
Locus tag: Cyan7822DRAFT_0253
Cyan7822DRAFT_0253 -157 4.9 AAGTATTTATACTC
-143 4.6 AAGTAAATTTATCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: slr1957
Ortholog function: Conserved hypothetical protein
Cyanothece sp. ATCC 51142 cce_2950 -166 4.5 AAGCATATCTACTT
Cyanothece sp. PCC 7425 Cyan7425_3849 -86 5.1 AAGTATTTATACCT
Cyanothece sp. PCC 8801 PCC8801_3714 -148 4.5 AAGCAAGATTACCT
Nostoc sp. PCC 7120 all2740 -157 4.3 AAGCATGAATACTA
Synechococcus sp. PCC 7002 SYNPCC7002_A1219 -217 5 AAGTAATTATACCC
Synechocystis sp. PCC 6803 slr1957 -18 4.8 AAGCATAAATACCT
Position: -19
Score: 5
Sequence: AAGTATTTTTACCT
Locus tag: Cyan7822DRAFT_1314
Cyan7822DRAFT_1314 -19 5 AAGTATTTTTACCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndhD2
Ortholog function: NADH dehydrogenase subunit
Cyanothece sp. PCC 7425 Cyan7425_0836 -110 4.2 AAGTAGGTTTACCC
-8 4.4 AAGTATTTATGCTC
Microcystis aeruginosa NIES-843 MAE_42210 -20 4.2 AGGTATTTTTTCTT
Nostoc sp. PCC 7120 alr5050 -23 4.5 AAGTATTTTTGCTT
Synechocystis sp. PCC 6803 slr1291 -20 4.3 AGGTATTTATTCTT
Trichodesmium erythraeum IMS101 Tery_3241 -103 4.7 AAGTATATATATTT
-20 4.1 AAGTATTTGTGCTC
Position: -319
Score: 3.3
Sequence: AAGTAAGTTTGTGG
Position: -42
Score: 3.6
Sequence: AAGTCATTATTTTT
Locus tag: Cyan7822DRAFT_2596
Cyan7822DRAFT_2596 -319 3.3 AAGTAAGTTTGTGG
-42 3.6 AAGTCATTATTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlB
Ortholog function: Light-independent protochlorophyllide reductase subunit B
Microcystis aeruginosa NIES-843 MAE_53860 -319 4.5 AAGCAAAATTACCG
Nostoc sp. PCC 7120 alr3441 -56 3.7 AAGCACTTATAGTC
Synechococcus sp. PCC 7002 SYNPCC7002_A1652 -14 4.6 GAGTAAAAATACCT
Synechocystis sp. PCC 6803 slr0772 -182 3.4 AAGCATTAAGAATT
Trichodesmium erythraeum IMS101 Tery_3812 -177 4.1 AGTTAAAAATACTT
Position: -28
Score: 3.9
Sequence: GAGTAATTTTGCTA
Position: -14
Score: 3.8
Sequence: AGGGACAAATACTT
Locus tag: Cyan7822DRAFT_5098
Cyan7822DRAFT_5098 -28 3.9 GAGTAATTTTGCTA
-14 3.8 AGGGACAAATACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pedR
Ortholog function: Thioredoxin status sensitive transcription regulator, LuxR family
Cyanothece sp. ATCC 51142 cce_4720 -29 4.7 AAGTAAATGTACTA
Cyanothece sp. PCC 7425 Cyan7425_0293 -28 4.3 AAGTAATTGTACGG
Cyanothece sp. PCC 8801 PCC8801_4139 -28 4.7 AAGTAAATGTACTA
Microcystis aeruginosa NIES-843 MAE_54580 -28 4.7 AAGTAAATATACGA
Nostoc sp. PCC 7120 asl2551 -194 4.5 AAGTATATTTAATT
-33 4.6 AAGTACATATACCA
Prochlorococcus marinus str. MIT 9313 PMT2014 -366 3.7 AAGTAAATCTGATT
Synechococcus elongatus PCC 7942 Synpcc7942_2264 -30 4.7 AAGTACAAATACTT
Synechococcus sp. PCC 7002 SYNPCC7002_A0641 -257 3.7 AAGAAAGTTTATCT
Synechocystis sp. PCC 6803 ssl0564 -28 4.8 GAGTAAATATACCT
Thermosynechococcus elongatus BP-1 null -22 4.6 AAGTAATTATACGG
Trichodesmium erythraeum IMS101 Tery_2735 -34 5.2 AAGCAAATATACTT