Propagation of CcmR regulog to Cyanothece sp. PCC 7822
| Source regulog: | CcmR - Cyanobacteria |
| Regulator type: | Transcription factor |
| Regulator family: | LysR |
| Regulation mode: | repressor |
| Biological process: | Carbon dioxide fixation |
| Effector: | |
| Phylum: | Cyanobacteria |
| Propagated regulon: | |
| Target genome | Cyanothece sp. PCC 7822 |
| Orthologous TF(s) | Cyan7822DRAFT_2603 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -314
Score: 5.2 Sequence: ATTGATTAAAATCTAT
Position: -67
Score: 4 Sequence: AGAGATTTTTACTTAT
Locus tag: Cyan7822DRAFT_0855
|
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| Cyan7822DRAFT_0855 | -314 | 5.2 | ATTGATTAAAATCTAT | |
| -67 | 4 | AGAGATTTTTACTTAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cmpA | ||||
| Ortholog function: Bicarbontate ABC transporter, substrate-binding protein | ||||
| Cyanothece sp. ATCC 51142 | cce_0305 | -299 | 4.9 | ATAGATAAATACCTAT |
| Cyanothece sp. PCC 7425 | Cyan7425_4925 | -286 | 5.2 | ATAGACTTAGGGCTAT |
| Cyanothece sp. PCC 8801 | PCC8801_3521 | -268 | 4.5 | ATACATATTAAGCTAT |
| Microcystis aeruginosa NIES-843 | MAE_19990 | -104 | 4.6 | ATAGCTAAATTTCTAT |
| Synechococcus elongatus PCC 7942 | Synpcc7942_1488 | -186 | 4.9 | ATTGACTTAGCTCTAT |
| Synechococcus sp. JA-3-3Ab | CYA_0894 | -185 | 4.2 | ATAAACGGAAGTCTAT |
| -153 | 4.4 | ATTGTATTGTTTCTAT | ||
| Synechocystis sp. PCC 6803 | slr0040 | -208 | 4.5 | TTGGATATTTATCTAT |
| Thermosynechococcus elongatus BP-1 | null | -124 | 4.1 | ATAGATTGTTTGCAAT |
|
Position: -68
Score: 5.3 Sequence: ATTGACTTATTTCTAT
Locus tag: Cyan7822DRAFT_2603
|
||||
| Cyan7822DRAFT_2603 | -68 | 5.3 | ATTGACTTATTTCTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccmR | ||||
| Ortholog function: Carbon assimilation transcriptional regulator, LysR family | ||||
| Cyanothece sp. ATCC 51142 | cce_3731 | -133 | 4.3 | ATAGATTTATTTCAAC |
| -101 | 4.8 | ATGGAAATAAGTCTAT | ||
| Cyanothece sp. PCC 8801 | PCC8801_3406 | -144 | 4.4 | ATAGAATTTAATCAAA |
| -112 | 4.8 | ATTGTATTTAATCTAT | ||
| Microcystis aeruginosa NIES-843 | MAE_62070 | -238 | 4.3 | ATAGACAAAACTTTAT |
| -207 | 4.9 | ATTGTTATAAATCTAT | ||
| -122 | 4.9 | ATTGATTTAAACCTAT | ||
| Microcystis aeruginosa NIES-843 | MAE_15110 | -71 | 4.9 | ATTGACTAGAATCTAT |
| Synechocystis sp. PCC 6803 | sll1594 | -240 | 4.7 | ATTGGCTTTATTCTAT |
| -179 | 4.8 | ATAGCCATAGGTCTAT | ||
|
Position: -187
Score: 5.6 Sequence: ATAGATTAATATCTAT
Locus tag: Cyan7822DRAFT_3558
|
||||
| Cyan7822DRAFT_3558 | -187 | 5.6 | ATAGATTAATATCTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cce_1687 | ||||
| Ortholog function: Predicted membrane protein (COG3431) | ||||
| Cyanothece sp. ATCC 51142 | cce_1687 | -232 | 4.5 | ATAGTAATTAGCCTAT |
| -200 | 5 | ATAGAATCTAGTCTAT | ||
| Cyanothece sp. PCC 7425 | Cyan7425_4921 | -286 | 5.2 | ATAGACTTAGGGCTAT |
| Cyanothece sp. PCC 8801 | PCC8801_1398 | -46 | 5.2 | ATAGCTTTTAATCTAT |
| -14 | 4.2 | ATAGAATAAATACAAT | ||