Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NtcA regulog to Cyanothece sp. PCC 7424

Reference regulog properties
Source regulog: NtcA - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Phylum: Cyanobacteria
Propagated regulon:
Target genome Cyanothece sp. PCC 7424
Orthologous TF(s) PCC7424_0372
Regulated genes 30
Built upon 228 sites [see more]
Predicted regulatory interactions in Cyanothece sp. PCC 7424
Locus tag Position Score Sequence
Position: -94
Score: 3.4
Sequence: TGTAATCTTAACAATA
Position: -68
Score: 4
Sequence: TGTAGCGGTATTTACC
Locus tag: PCC7424_0313
PCC7424_0313 -94 3.4 TGTAATCTTAACAATA
-68 4 TGTAGCGGTATTTACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: icd
Ortholog function: Isocitrate dehydrogenase (NADP+)
Microcystis aeruginosa NIES-843 MAE_62530 -30 3.7 CGTATAGATAAATACT
Nostoc sp. PCC 7120 alr1827 -6 3.4 TGAAATATGTACAACA
Position: -230
Score: 4.9
Sequence: AGTATCTTATGTTACA
Locus tag: PCC7424_0499
PCC7424_0499 -230 4.9 AGTATCTTATGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: ammonium transporter
Synechococcus sp. PCC 7002 SYNPCC7002_A2208 -52 3.7 GGTTACTTCTGCTACC
Synechocystis sp. PCC 6803 sll0108 -189 4 AGTAGTAAATCATACA
-18 4.4 TGTAGATTAAAGTACA
Cyanothece sp. ATCC 51142 cce_3261 -152 3.5 TGTtAaggtTGTaACA
Cyanothece sp. PCC 8801 PCC8801_1229 -264 5 TGTATTTTTTGATACA
-229 4.1 AGTAATAAAAAAAACA
Microcystis aeruginosa NIES-843 MAE_40010 -213 4.6 TGTATCAACGAATACA
Trichodesmium erythraeum IMS101 Tery_4477 -83 4.9 AGTAGCATTTGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_0442 -151 4.1 TGTTACATCGATTACA
Prochlorococcus marinus str. MIT 9313 PMT1853 -160 3.8 TGTAACAAAATGAACT
Synechococcus sp. WH 8102 SYNW0253 -100 4.2 TGTATCAATTAACACA
Thermosynechococcus elongatus BP-1 amt1 -190 4.4 TGTATAACGTGATACA
Position: -86
Score: 4.2
Sequence: TGTATCAAGATCTACG
Locus tag: PCC7424_0664
PCC7424_0664 -86 4.2 TGTATCAAGATCTACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcB
Ortholog function: Nitrogen assimilation transcriptional activator, LysR family
Synechococcus sp. PCC 7002 SYNPCC7002_A1632 -87 3.9 TGTAACATccGgaACA
Cyanothece sp. ATCC 51142 cce_0198 -73 4.2 AGTATCAATTTCTACG
Cyanothece sp. PCC 8801 PCC8801_2329 -80 4.7 TGTATCAAATTCTACT
Cyanothece sp. PCC 7425 Cyan7425_1599 -78 4.6 TGTATCACTATCTACA
Microcystis aeruginosa NIES-843 MAE_09380 -80 4.1 gGTAgCAatTtcTACc
Nostoc sp. PCC 7120 all0602 -80 4.5 TGTAACAAAATCTACC
-21 4.7 TGTAATTAAGGCTACA
Trichodesmium erythraeum IMS101 Tery_4333 -27 4 TGTATAAAATAACACA
Synechococcus elongatus PCC 7942 Synpcc7942_1242 -153 4.3 AGTAATCATTGATACT
-82 4.9 AGTAGCAATTGCTACA
Synechococcus sp. JA-3-3Ab CYA_0984 -89 4.2 TGTAACGGTGTTTACA
Gloeobacter violaceus PCC 7421 gvip213 -46 4 CGTAACCCCAGATACA
Thermosynechococcus elongatus BP-1 null -122 3.9 TGTATCAATCAACACA
Position: -206
Score: 4.2
Sequence: CGTTGCTAAAGTTACA
Locus tag: PCC7424_1261
PCC7424_1261 -206 4.2 CGTTGCTAAAGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifJ
Ortholog function: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
Synechococcus sp. PCC 7002 SYNPCC7002_A1443 -272 4.1 TTTATCATTTTCTACA
Synechocystis sp. PCC 6803 sll0741 -181 3.3 AGAATCAACAAAAACA
Cyanothece sp. ATCC 51142 cce_0953 -52 3.8 TGCAACAAAAATTACC
Cyanothece sp. PCC 8801 PCC8801_3918 -265 3.5 AGTAACCATAATTATT
Cyanothece sp. PCC 7425 Cyan7425_4369 -120 3.1 TCTAACGTATTCTCCA
Nostoc sp. PCC 7120 alr1911 -281 3.2 TGAATTTGATGTAACC
Position: -108
Score: 4.3
Sequence: TGTATAAACTATTACT
Position: -76
Score: 4.9
Sequence: TGTAACAATTGTTACT
Position: -48
Score: 4.7
Sequence: AGTATATTTTGATACA
Locus tag: PCC7424_1464
PCC7424_1464 -108 4.3 TGTATAAACTATTACT
-76 4.9 TGTAACAATTGTTACT
-48 4.7 AGTATATTTTGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cce_3797
Ortholog function: conserved hypothetical protein
Cyanothece sp. ATCC 51142 cce_3797 -70 4.9 TGTAGCTTAATATACA
Cyanothece sp. ATCC 51142 cce_3797 -70 4.9 TGTAGCTTAATATACA
Cyanothece sp. PCC 8801 PCC8801_3848 -165 5.1 TGTAACTTTAGATACA
Cyanothece sp. PCC 8801 PCC8801_3848 -165 5.1 TGTAACTTTAGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_1845 -27 4.3 TGTATCCGTTGCTACC
Synechococcus elongatus PCC 7942 Synpcc7942_1845 -27 4.3 TGTATCCGTTGCTACC
Position: -247
Score: 4
Sequence: AGTAACTTTGATAACA
Position: -116
Score: 3.9
Sequence: GGTAACAAAAGACACA
Locus tag: PCC7424_1683
PCC7424_1683 -247 4 AGTAACTTTGATAACA
-116 3.9 GGTAACAAAAGACACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirA
Ortholog function: Nitrite reductase, ferredoxin dependent
Synechococcus sp. PCC 7002 SYNPCC7002_A1827 -111 4 CGTAGTTAACACTACA
Synechocystis sp. PCC 6803 slr0898 -74 4.7 TGTAATTTACGTTACA
Cyanothece sp. ATCC 51142 cce_1223 -76 4.7 TGTTACATTAGCTACA
Cyanothece sp. PCC 8801 PCC8801_2468 -75 4.6 TGTTACAATTAATACA
Cyanothece sp. PCC 7425 Cyan7425_4573 -123 4.5 TGTAACTTAATATACC
Microcystis aeruginosa NIES-843 MAE_18410 -190 4.1 TGTTACAGACAATACA
Trichodesmium erythraeum IMS101 Tery_1068 -276 3.8 TGTATTTTTATATAGT
-199 4.1 TGTTATATAAGCTACG
Synechococcus elongatus PCC 7942 Synpcc7942_1240 -220 4.9 TGTAGCAATTGCTACT
-149 4.3 AGTATCAATGATTACT
-80 4.4 TGTAGTTTCTGTTACC
Synechococcus sp. JA-3-3Ab CYA_0612 -72 3.9 TGTAACTGCCAATACC
Gloeobacter violaceus PCC 7421 gvip212 -146 4 TGTATCTGGGGTTACG
Thermosynechococcus elongatus BP-1 tlr1349 -82 4.6 AGTAGCAAAATTTACA
Position: -162
Score: 4.5
Sequence: AGTAAAATAGGTTACA
Position: -93
Score: 3.8
Sequence: AGTATAATTTATAACT
Position: -84
Score: 3.5
Sequence: TATAACTTTTTTTATA
Locus tag: PCC7424_1795
PCC7424_1795 -162 4.5 AGTAAAATAGGTTACA
-93 3.8 AGTATAATTTATAACT
-84 3.5 TATAACTTTTTTTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: isiA
Ortholog function: Iron-stress chlorophyll-binding protein
Nostoc sp. PCC 7120 all4001 -37 3.7 AGTATTTCTGGCAACA
Trichodesmium erythraeum IMS101 Tery_1667 -134 3.6 AGTAATTGATCATACT
Thermosynechococcus elongatus BP-1 null -195 3.8 AGTTTCTGGAAATACA
Position: -111
Score: 4.5
Sequence: TGTAACTGATGATACG
Locus tag: PCC7424_1817
PCC7424_1817 -111 4.5 TGTAACTGATGATACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: hupS
Ortholog function: NiFe uptake hydrogenase, small subunit
Cyanothece sp. ATCC 51142 cce_1063 -204 4.8 TGTAAAATTTAATACA
-159 3.8 GGTAATAATTAATAGA
Cyanothece sp. PCC 8801 PCC8801_3212 -127 4.3 TGTAACAACAATAACA
Trichodesmium erythraeum IMS101 Tery_3369 -188 4.3 AGTATCAAAAATAACA
Position: -225
Score: 4.3
Sequence: TGTAAACGAGGCTACA
Locus tag: PCC7424_1979
PCC7424_1979 -225 4.3 TGTAAACGAGGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpoD
Ortholog function: RNA polymerase sigma 70 factor
Synechocystis sp. PCC 6803 slr0653 -246 3.9 TGTTATCGAGGCTACA
Cyanothece sp. ATCC 51142 cce_0875 -232 4.3 AGTAATCAAGGCTACA
Cyanothece sp. PCC 8801 PCC8801_0154 -257 4.4 TGTAATCGAGGCTACA
Microcystis aeruginosa NIES-843 MAE_54470 -126 4.9 TGTAATTAAAGCTACA
Trichodesmium erythraeum IMS101 Tery_5068 -199 4 TGTAAAATTTTGTACC
-46 3.7 TGTAAAATAATTTATT
Position: -124
Score: 5.2
Sequence: TGTAACAATAGATACA
Locus tag: PCC7424_2046
PCC7424_2046 -124 5.2 TGTAACAATAGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gifB
Ortholog function: Glutamine synthetase inactivating factor IF17
Synechocystis sp. PCC 6803 sll1515 -119 4.2 CGTAAAAATGGATACA
Position: -192
Score: 4.2
Sequence: TTTATTTTTTGTTACA
Position: -153
Score: 4.3
Sequence: CGTATCAACAGATACT
Position: -136
Score: 3.4
Sequence: TTTTTCAATGTTTACA
Locus tag: PCC7424_2203
PCC7424_2203 -192 4.2 TTTATTTTTTGTTACA
-153 4.3 CGTATCAACAGATACT
-136 3.4 TTTTTCAATGTTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: glutamine synthetase, type I
Synechococcus sp. PCC 7002 SYNPCC7002_A1630 -125 3.5 TGTgACccAgacTACA
Synechocystis sp. PCC 6803 slr1756 -98 4.3 GGTAGCGAAAAATACA
Cyanothece sp. ATCC 51142 cce_4432 -89 4.5 AGTATCCAATTATACA
-30 4 TGTATATATTGAAACC
Cyanothece sp. PCC 8801 PCC8801_0808 -92 4 CGTATCATGGTATACA
Cyanothece sp. PCC 7425 Cyan7425_1839 -221 4.9 TGTAACTCATGATACA
Microcystis aeruginosa NIES-843 MAE_19270 -92 4.7 TGTATCgaAaaATACA
Nostoc sp. PCC 7120 alr2328 -142 4.8 TGTAACAAAGACTACA
Trichodesmium erythraeum IMS101 Tery_3834 -250 4 CGTAACACCCGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_2156 -194 4.8 TGTATCAgcTGTTACA
Prochlorococcus marinus str. MIT 9313 PMT0601 -79 4.2 GGTACCTGTTGCTACA
Synechococcus sp. JA-3-3Ab CYA_1363 -138 4.3 CGTATCAGAAACTACA
Gloeobacter violaceus PCC 7421 gvip146 -116 4 CGTATCTCAGACTACA
Position: -74
Score: 4.7
Sequence: TGTAACTATTATTACT
Locus tag: PCC7424_2262
PCC7424_2262 -74 4.7 TGTAACTATTATTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase, type II
Synechocystis sp. PCC 6803 slr0851 -72 4.1 TGTAACAACCATTACC
Cyanothece sp. ATCC 51142 cce_0624 -47 4.7 TGTAACTGTAGTTACT
Cyanothece sp. PCC 8801 PCC8801_3485 -117 4.6 TGTAACCATAGCTACT
-92 3.8 CGTAATTGGTTTTACA
Position: -113
Score: 5.1
Sequence: TGTAGCTTTTGTTACA
Locus tag: PCC7424_2641
PCC7424_2641 -113 5.1 TGTAGCTTTTGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0264
Ortholog function: Conserved hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A0264 -29 5 TGTATCAAATACTACA
Microcystis aeruginosa NIES-843 MAE_18580 -68 4.8 TGTATCTTTAGCTACT
Nostoc sp. PCC 7120 all1327 -52 4.3 CGTAGTGTATGTTACA
Position: -210
Score: 4.5
Sequence: TGTAATCATCGTTACA
Locus tag: PCC7424_2691
PCC7424_2691 -210 4.5 TGTAATCATCGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A1954
Ortholog function: putative two-component sensor histidine kinase
Cyanothece sp. PCC 8801 PCC8801_3053 -198 4.8 TGTAATCATAGTTACA
Microcystis aeruginosa NIES-843 MAE_14410 -75 3.7 TGTAAACTGGGAAACA
Nostoc sp. PCC 7120 alr3982 -250 4.6 TGTAGTGATAGCTACA
Trichodesmium erythraeum IMS101 Tery_3912 -156 4.3 TGTAGTTATGGCTACC
Position: -120
Score: 5.1
Sequence: TGTATCTAAAGTTACA
Locus tag: PCC7424_2862
PCC7424_2862 -120 5.1 TGTATCTAAAGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: urtA
Ortholog function: Urea ABC transporter, substrate-binding protein
Synechococcus sp. PCC 7002 SYNPCC7002_A0398 -127 4.1 TGTATCAAGTGTCACA
Synechocystis sp. PCC 6803 slr0447 -211 4.5 GGTATCCTATGCTACA
Cyanothece sp. PCC 7425 Cyan7425_2260 -148 3.7 TGTATAATAGATCACA
Microcystis aeruginosa NIES-843 MAE_06220 -170 4.7 AGTAGCAAAAATTACA
-140 4.6 AGTAGCGAAAGTTACA
Nostoc sp. PCC 7120 all1951 -116 4.3 AGTATCAAAAATAACA
Trichodesmium erythraeum IMS101 Tery_0130 -390 3.8 AGTTACAAAAAAAACA
Synechococcus sp. JA-3-3Ab CYA_1924 -272 3.7 GGTATCCCGCGATACA
Thermosynechococcus elongatus BP-1 tlr1120 -81 4 TGTAGCCTAGCATACA
Position: -87
Score: 4.4
Sequence: TGTAGTTTTCTTTACA
Locus tag: PCC7424_2962
PCC7424_2962 -87 4.4 TGTAGTTTTCTTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A2395
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A2395 -200 4.5 TGTTACTTAAATTACA
-92 4.5 TGTAGTAGACGTTACA
Cyanothece sp. ATCC 51142 cce_2729 -148 4 TGTAACATATGATAAC
-87 4.6 TGTAATATTGATTACA
Cyanothece sp. PCC 8801 PCC8801_2066 -53 4.8 TGTAATATTAATTACA
Cyanothece sp. PCC 7425 Cyan7425_0833 -38 3.7 AGTAGTTTAATAAACT
Microcystis aeruginosa NIES-843 MAE_38700 -87 4.2 TGTAATCATCTTTACA
Nostoc sp. PCC 7120 alr4308 -64 3.9 GGTAGTCGGAGTTACA
Trichodesmium erythraeum IMS101 Tery_0672 -94 4.3 AGTATTCAAAATTACA
Synechococcus sp. JA-3-3Ab CYA_0570 -139 3.9 GGTAAGATAAAATACA
-81 4.2 CGTATCAAAGGCTACT
Thermosynechococcus elongatus BP-1 tlr1468 -85 4.3 TGTAGTTGAGTTTACA
Position: -96
Score: 4.3
Sequence: TGTAATCAACTATACA
Locus tag: PCC7424_3400
PCC7424_3400 -96 4.3 TGTAATCAACTATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0076
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A0076 -97 4.2 AGTATTGAAATATACA
Synechocystis sp. PCC 6803 ssr1562 -78 4.5 TGTAATCGATAATACA
Cyanothece sp. ATCC 51142 cce_0537 -137 4 TGTAAACTATGATATA
-93 4.8 TGTAGTCTTTGTTACA
Cyanothece sp. PCC 8801 PCC8801_3101 -95 4.6 TGTATTGGTTGTTACA
Microcystis aeruginosa NIES-843 MAE_39690 -99 4.3 TGTAATCGTCGATACA
Position: -102
Score: 4
Sequence: GGTATGAAAAGTTACA
Locus tag: PCC7424_3462
PCC7424_3462 -102 4 GGTATGAAAAGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narB
Ortholog function: Nitrate reductase
Synechocystis sp. PCC 6803 sll1454 -96 3.9 AGTTACAAACTATACA
Cyanothece sp. PCC 8801 PCC8801_2463 -165 4.4 TGTATtAccaaATACA
Microcystis aeruginosa NIES-843 MAE_53960 -88 4.8 TGTATTAATAACTACA
Trichodesmium erythraeum IMS101 Tery_1070 -276 3.8 TGTATTTTTATATAGT
-199 4.1 TGTTATATAAGCTACG
Synechococcus elongatus PCC 7942 Synpcc7942_1235 -220 4.9 TGTAGCAATTGCTACT
-149 4.3 AGTATCAATGATTACT
-80 4.4 TGTAGTTTCTGTTACC
Thermosynechococcus elongatus BP-1 tlr1355 -82 4.6 AGTAGCAAAATTTACA
Position: -324
Score: 4.5
Sequence: TGTTACAAATTATACA
Position: -230
Score: 4.3
Sequence: AGTTTTTTTTGTTACA
Position: -221
Score: 4.5
Sequence: TGTTACAAAAACTACA
Locus tag: PCC7424_3527
PCC7424_3527 -324 4.5 TGTTACAAATTATACA
-230 4.3 AGTTTTTTTTGTTACA
-221 4.5 TGTTACAAAAACTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrtA
Ortholog function: Nitrate/nitrite ABC transporter, substrate-binding protein
Synechocystis sp. PCC 6803 sll1450 -96 3.9 AGTTACAAACTATACA
Cyanothece sp. PCC 8801 PCC8801_4396 -184 4.6 TGTAGCAAATAATACG
-106 3.9 AGTATTTATAGACACA
Cyanothece sp. PCC 7425 Cyan7425_4572 -123 4.5 TGTAACTTAATATACC
Microcystis aeruginosa NIES-843 MAE_14800 -177 4.2 TGTAACAATCTATACG
Synechococcus elongatus PCC 7942 Synpcc7942_1239 -220 4.9 TGTAGCAATTGCTACT
-149 4.3 AGTATCAATGATTACT
-80 4.4 TGTAGTTTCTGTTACC
Synechococcus sp. JA-3-3Ab CYA_0613 -72 3.9 TGTAACTGCCAATACC
Thermosynechococcus elongatus BP-1 tlr1350 -82 4.6 AGTAGCAAAATTTACA
Position: -78
Score: 4.6
Sequence: AGTAGCGAATGTTACA
Locus tag: PCC7424_4398
PCC7424_4398 -78 4.6 AGTAGCGAATGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrrA
Ortholog function: Transcriptional regulator, OmpR family
Synechococcus sp. PCC 7002 SYNPCC7002_A0496 -75 4.1 CGTAACCACGGTTACA
Synechocystis sp. PCC 6803 sll1330 -75 4.6 GGTAACTGTTGTTACA
Cyanothece sp. ATCC 51142 cce_1808 -76 4.3 CGTAGCCGATGTTACA
Cyanothece sp. PCC 8801 PCC8801_3375 -76 4.5 CGTAGCAGATGTTACA
Cyanothece sp. PCC 7425 Cyan7425_0851 -82 4.1 AGTAGCTAGAGTTACG
Nostoc sp. PCC 7120 all4312 -75 4.5 AGTAACAAAGACTACA
Trichodesmium erythraeum IMS101 Tery_0675 -89 4.7 AGTAGCTTCTGTTACA
Thermosynechococcus elongatus BP-1 tlr1330 -138 4 AGTATTATTCGTTACG
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