Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of CcmR regulog to Cyanothece sp. PCC 7424

Reference regulog properties
Source regulog: CcmR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: repressor
Biological process: Carbon dioxide fixation
Effector:
Phylum: Cyanobacteria
Propagated regulon:
Target genome Cyanothece sp. PCC 7424
Orthologous TF(s) PCC7424_3312
Regulated genes 12
Built upon 72 sites [see more]
Predicted regulatory interactions in Cyanothece sp. PCC 7424
Locus tag Position Score Sequence
Position: -184
Score: 3.8
Sequence: TTAATCTTAAGTTTAT
Position: -131
Score: 4.8
Sequence: ATTGACAAAATTCTAT
Locus tag: PCC7424_1097
PCC7424_1097 -184 3.8 TTAATCTTAAGTTTAT
-131 4.8 ATTGACAAAATTCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndhF3
Ortholog function: NADH dehydrogenase subunit F
Cyanothece sp. ATCC 51142 cce_0603 -74 5.5 ATAGACTTAATTCTAT
Cyanothece sp. PCC 8801 PCC8801_4247 -71 5.6 ATAGACTAAAGTCTAT
-8 5 ATTGTTATATGTCTAT
Gloeobacter violaceus PCC 7421 gvip132 -139 5 ATCTACTTTTATCTAT
Microcystis aeruginosa NIES-843 MAE_15120 -71 4.9 ATTGACTAGAATCTAT
Nostoc sp. PCC 7120 alr4156 -245 5.9 ATAGATTTTTGTCTAT
Synechococcus sp. JA-3-3Ab CYA_0640 -107 5 CTTGATTTTTGTCTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A0172 -63 5 ATTGACTCTAGTCTAT
Synechocystis sp. PCC 6803 sll1732 -204 3.9 ATTGTCGCTTGACTAT
Position: -14
Score: 3.9
Sequence: ATTAACGTAAACCTAT
Locus tag: PCC7424_1099
PCC7424_1099 -14 3.9 ATTAACGTAAACCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndhD3
Ortholog function: NADH dehydrogenase subunit D
Cyanothece sp. ATCC 51142 cce_0604 -74 5.5 ATAGACTTAATTCTAT
Cyanothece sp. PCC 8801 PCC8801_4249 -71 5.6 ATAGACTAAAGTCTAT
-8 5 ATTGTTATATGTCTAT
Gloeobacter violaceus PCC 7421 gvip133 -139 5 ATCTACTTTTATCTAT
Microcystis aeruginosa NIES-843 MAE_15140 -71 4.9 ATTGACTAGAATCTAT
Nostoc sp. PCC 7120 alr4157 -245 5.9 ATAGATTTTTGTCTAT
Synechococcus sp. JA-3-3Ab CYA_0639 -107 5 CTTGATTTTTGTCTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A0173 -63 5 ATTGACTCTAGTCTAT
Synechocystis sp. PCC 6803 sll1733 -204 3.9 ATTGTCGCTTGACTAT
Position: -84
Score: 4.2
Sequence: ATAAACTTAAAAATAT
Locus tag: PCC7424_1272
PCC7424_1272 -84 4.2 ATAAACTTAAAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sbtB
Ortholog function: Predicted membrane protein
Cyanothece sp. ATCC 51142 cce_2937 -52 4.5 ATAGATTTTTGTCTTA
Cyanothece sp. PCC 7425 Cyan7425_5062 -94 4.2 TTTTACCTATGTCTAT
Cyanothece sp. PCC 8801 PCC8801_1248 -174 5.4 ATAGATAAATGTCTAT
Microcystis aeruginosa NIES-843 MAE_62100 -196 4.7 ATAGGTTTAAATCAAT
-111 4.9 ATAGATTTATAACAAT
-80 5 ATAAAGTTTTGTCTAT
Nostoc sp. PCC 7120 all2133 -191 4.6 ATAGAATTTTGGCTCT
-173 4.8 ATAAATATTGATCTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A0472 -131 4.6 ATAGACTTAAAGATAT
-99 4.2 ATAGAGTCTTGTCTTT
Synechocystis sp. PCC 6803 slr1513 -182 4.7 ATAGACTTTAGCTTAT
-136 5 ATAGACAAGAGTCTAT
Position: 27
Score: 4.4
Sequence: ATCGCCTTTTGTCTAA
Locus tag: PCC7424_2566
PCC7424_2566 27 4.4 ATCGCCTTTTGTCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mnhB
Ortholog function: Na/H antiporter, subunit B
Cyanothece sp. ATCC 51142 cce_1680 -232 4.5 ATAGTAATTAGCCTAT
-200 5 ATAGAATCTAGTCTAT
Cyanothece sp. PCC 7425 Cyan7425_3548 -121 4.7 ATTTATAAATATCTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A2380 -123 5.2 ATAGATATTAAACTAT
Synechocystis sp. PCC 6803 slr2012 -125 3.8 ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803 slr2012 -107 4.3 ATTGTGATTGGTCTAT
Thermosynechococcus elongatus BP-1 tll1812 -219 5 ATTGATAAAAATCTAT
-193 4.4 ATTGACATTGATCTAA
Position: -8
Score: 4
Sequence: ATTTTTCTATGGCTAT
Locus tag: PCC7424_2568
PCC7424_2568 -8 4 ATTTTTCTATGGCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mnhG
Ortholog function: Na/H antiporter, subunit G
Cyanothece sp. ATCC 51142 cce_1682 -232 4.5 ATAGTAATTAGCCTAT
-200 5 ATAGAATCTAGTCTAT
Cyanothece sp. PCC 7425 Cyan7425_3546 -121 4.7 ATTTATAAATATCTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A2378 -123 5.2 ATAGATATTAAACTAT
Synechocystis sp. PCC 6803 ssr3410 -125 3.8 ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803 ssr3410 -107 4.3 ATTGTGATTGGTCTAT
Thermosynechococcus elongatus BP-1 tsl1814 -219 5 ATTGATAAAAATCTAT
-193 4.4 ATTGACATTGATCTAA
Position: -163
Score: 4.7
Sequence: ATTTACAAATATCTAT
Position: -103
Score: 4.7
Sequence: ATAGATTAATAACAAT
Locus tag: PCC7424_2572
PCC7424_2572 -163 4.7 ATTTACAAATATCTAT
-103 4.7 ATAGATTAATAACAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mnhC
Ortholog function: Na/H antiporter, subunit C
Cyanothece sp. ATCC 51142 cce_1686 -232 4.5 ATAGTAATTAGCCTAT
-200 5 ATAGAATCTAGTCTAT
Cyanothece sp. PCC 7425 Cyan7425_3542 -121 4.7 ATTTATAAATATCTAT
Cyanothece sp. PCC 8801 PCC8801_2762 -56 4.8 ATAGGCTTTAAGCTAT
-24 4.7 ATAGTTTTTTGTATAT
Synechococcus sp. PCC 7002 SYNPCC7002_A2373 -123 5.2 ATAGATATTAAACTAT
Synechocystis sp. PCC 6803 slr2006 -125 3.8 ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803 slr2008 -125 3.8 ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803 slr2008 -107 4.3 ATTGTGATTGGTCTAT
Thermosynechococcus elongatus BP-1 tll1818 -219 5 ATTGATAAAAATCTAT
-193 4.4 ATTGACATTGATCTAA
Position: -270
Score: 4.4
Sequence: ATTAATGTTAATCTAT
Locus tag: PCC7424_4678
PCC7424_4678 -270 4.4 ATTAATGTTAATCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cmpA
Ortholog function: Bicarbontate ABC transporter, substrate-binding protein
Cyanothece sp. ATCC 51142 cce_0305 -299 4.9 ATAGATAAATACCTAT
Cyanothece sp. PCC 7425 Cyan7425_4925 -286 5.2 ATAGACTTAGGGCTAT
Cyanothece sp. PCC 8801 PCC8801_3521 -268 4.5 ATACATATTAAGCTAT
Microcystis aeruginosa NIES-843 MAE_19990 -104 4.6 ATAGCTAAATTTCTAT
Synechococcus elongatus PCC 7942 Synpcc7942_1488 -186 4.9 ATTGACTTAGCTCTAT
Synechococcus sp. JA-3-3Ab CYA_0894 -185 4.2 ATAAACGGAAGTCTAT
-153 4.4 ATTGTATTGTTTCTAT
Synechocystis sp. PCC 6803 slr0040 -208 4.5 TTGGATATTTATCTAT
Thermosynechococcus elongatus BP-1 null -124 4.1 ATAGATTGTTTGCAAT
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