Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing ndhD3 gene

Properties
Regulog: CcmR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: repressor
Biological process: Carbon dioxide fixation
Effector:
Phylum: Cyanobacteria
Built upon 72 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Cyanothece sp. ATCC 51142
Position: -74
Score: 5.52754
Sequence: ATAGACTTAATTCTAT
Locus tag: cce_0603
Name: ndhF3
Funciton: NADH dehydrogenase subunit F
Locus tag: cce_0604
Name: ndhD3
Funciton: NADH dehydrogenase subunit D
Locus tag: cce_0605
Name: cupA
Funciton: CO2 uptake protein
ndhF3-ndhD3-cupA -74 5.5 ATAGACTTAATTCTAT cce_0603
Cyanothece sp. PCC 8801
Position: -71
Score: 5.5986
Sequence: ATAGACTAAAGTCTAT
Position: -8
Score: 5.03594
Sequence: ATTGTTATATGTCTAT
Locus tag: PCC8801_4247
Name: ndhF3
Funciton: NADH dehydrogenase subunit F
Locus tag: PCC8801_4248
Name: ecaB2
Funciton: Periplasmic carbonic anhydrase
Locus tag: PCC8801_4249
Name: ndhD3
Funciton: NADH dehydrogenase subunit D
Locus tag: PCC8801_4250
Name: cupA
Funciton: CO2 uptake protein
ndhF3-ecaB2-ndhD3-cupA -71 5.6 ATAGACTAAAGTCTAT PCC8801_4247
-8 5 ATTGTTATATGTCTAT
Gloeobacter violaceus PCC 7421
Position: -139
Score: 4.95938
Sequence: ATCTACTTTTATCTAT
Locus tag: gvip132
Name: ndhF3
Funciton: NADH dehydrogenase subunit F
Locus tag: gvip133
Name: ndhD3
Funciton: NADH dehydrogenase subunit D
Locus tag: gvip134
Name: cupA
Funciton: CO2 uptake protein
Locus tag: glr1006
Name: cupS
Funciton: CO2 uptake transporter, small subunit
ndhF3-ndhD3-cupA-cupS -139 5 ATCTACTTTTATCTAT gvip132
Microcystis aeruginosa NIES-843
Position: -71
Score: 4.89685
Sequence: ATTGACTAGAATCTAT
Locus tag: MAE_15110
Name: ccmR
Funciton: Carbon assimilation transcriptional regulator, LysR family
Locus tag: MAE_15120
Name: ndhF3
Funciton: NADH dehydrogenase subunit F
Locus tag: MAE_15130
Name: ecaB2
Funciton: Periplasmic carbonic anhydrase
Locus tag: MAE_15140
Name: ndhD3
Funciton: NADH dehydrogenase subunit D
ccmR-ndhF3-ecaB2-ndhD3 -71 4.9 ATTGACTAGAATCTAT MAE_15110
Nostoc sp. PCC 7120
Position: -245
Score: 5.85786
Sequence: ATAGATTTTTGTCTAT
Locus tag: alr4156
Name: ndhF3
Funciton: NADH dehydrogenase subunit F
Locus tag: alr4157
Name: ndhD3
Funciton: NADH dehydrogenase subunit D
ndhF3-ndhD3 -245 5.9 ATAGATTTTTGTCTAT alr4156
Synechococcus sp. JA-3-3Ab
Position: -107
Score: 5.03875
Sequence: CTTGATTTTTGTCTAT
Locus tag: CYA_0640
Name: ndhF3
Funciton: NADH dehydrogenase subunit F
Locus tag: CYA_0639
Name: ndhD3
Funciton: NADH dehydrogenase subunit D
Locus tag: CYA_0638
Name: cupA
Funciton: CO2 uptake protein
Locus tag: CYA_0636
Name: cupS
Funciton: CO2 uptake transporter, small subunit
ndhF3-ndhD3-cupA-cupS -107 5 CTTGATTTTTGTCTAT CYA_0640
Synechococcus sp. PCC 7002
Position: -63
Score: 5.03591
Sequence: ATTGACTCTAGTCTAT
Locus tag: SYNPCC7002_A0171
Name: ccmR
Funciton: Carbon assimilation transcriptional regulator, LysR family
Locus tag: SYNPCC7002_A0172
Name: ndhF3
Funciton: NADH dehydrogenase subunit F
Locus tag: SYNPCC7002_A0173
Name: ndhD3
Funciton: NADH dehydrogenase subunit D
Locus tag: SYNPCC7002_A0174
Name: cupA
Funciton: CO2 uptake protein
Locus tag: SYNPCC7002_A0175
Name: cupS
Funciton: CO2 uptake transporter, small subunit
ccmR-ndhF3-ndhD3-cupA-cupS -63 5 ATTGACTCTAGTCTAT SYNPCC7002_A0171
Synechocystis sp. PCC 6803
Position: -204
Score: 3.87446
Sequence: ATTGTCGCTTGACTAT
Locus tag: sll1732
Name: ndhF3
Funciton: NADH dehydrogenase subunit F
Locus tag: sll1733
Name: ndhD3
Funciton: NADH dehydrogenase subunit D
Locus tag: sll1734
Name: cupA
Funciton: CO2 uptake protein
Locus tag: sll1735
Name: cupS
Funciton: CO2 uptake transporter, small subunit
ndhF3-ndhD3-cupA-cupS -204 3.9 ATTGTCGCTTGACTAT sll1732