Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of CcmR regulog to Arthrospira maxima CS-328

Reference regulog properties
Source regulog: CcmR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: repressor
Biological process: Carbon dioxide fixation
Effector:
Phylum: Cyanobacteria
Propagated regulon:
Target genome Arthrospira maxima CS-328
Orthologous TF(s) AmaxDRAFT_1223
Regulated genes 3
Built upon 72 sites [see more]
Predicted regulatory interactions in Arthrospira maxima CS-328
Locus tag Position Score Sequence
Position: -92
Score: 5.5
Sequence: ATAGATTATAATCTAT
Locus tag: AmaxDRAFT_0745
AmaxDRAFT_0745 -92 5.5 ATAGATTATAATCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndhF3
Ortholog function: NADH dehydrogenase subunit F
Cyanothece sp. ATCC 51142 cce_0603 -74 5.5 ATAGACTTAATTCTAT
Cyanothece sp. PCC 8801 PCC8801_4247 -71 5.6 ATAGACTAAAGTCTAT
-8 5 ATTGTTATATGTCTAT
Gloeobacter violaceus PCC 7421 gvip132 -139 5 ATCTACTTTTATCTAT
Microcystis aeruginosa NIES-843 MAE_15120 -71 4.9 ATTGACTAGAATCTAT
Nostoc sp. PCC 7120 alr4156 -245 5.9 ATAGATTTTTGTCTAT
Synechococcus sp. JA-3-3Ab CYA_0640 -107 5 CTTGATTTTTGTCTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A0172 -63 5 ATTGACTCTAGTCTAT
Synechocystis sp. PCC 6803 sll1732 -204 3.9 ATTGTCGCTTGACTAT
Position: -53
Score: 5.2
Sequence: ATAGACTTAAATCAAT
Locus tag: AmaxDRAFT_1223
AmaxDRAFT_1223 -53 5.2 ATAGACTTAAATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmR
Ortholog function: Carbon assimilation transcriptional regulator, LysR family
Cyanothece sp. ATCC 51142 cce_3731 -133 4.3 ATAGATTTATTTCAAC
-101 4.8 ATGGAAATAAGTCTAT
Cyanothece sp. PCC 8801 PCC8801_3406 -144 4.4 ATAGAATTTAATCAAA
-112 4.8 ATTGTATTTAATCTAT
Microcystis aeruginosa NIES-843 MAE_62070 -238 4.3 ATAGACAAAACTTTAT
-207 4.9 ATTGTTATAAATCTAT
-122 4.9 ATTGATTTAAACCTAT
Microcystis aeruginosa NIES-843 MAE_15110 -71 4.9 ATTGACTAGAATCTAT
Synechocystis sp. PCC 6803 sll1594 -240 4.7 ATTGGCTTTATTCTAT
-179 4.8 ATAGCCATAGGTCTAT
Position: -89
Score: 4.2
Sequence: ATATTTTGGTGTCTAT
Locus tag: AmaxDRAFT_2362
AmaxDRAFT_2362 -89 4.2 ATATTTTGGTGTCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mnhD
Ortholog function: Na/H antiporter, subunit D
Cyanothece sp. ATCC 51142 cce_1685 -232 4.5 ATAGTAATTAGCCTAT
-200 5 ATAGAATCTAGTCTAT
Cyanothece sp. ATCC 51142 cce_2494 -180 5.1 ATTGATTTTAGGCTAT
Cyanothece sp. PCC 7425 Cyan7425_3543 -121 4.7 ATTTATAAATATCTAT
Cyanothece sp. PCC 8801 PCC8801_2761 -56 4.8 ATAGGCTTTAAGCTAT
-24 4.7 ATAGTTTTTTGTATAT
Synechococcus sp. PCC 7002 SYNPCC7002_A2374 -123 5.2 ATAGATATTAAACTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A2375 -123 5.2 ATAGATATTAAACTAT
Synechocystis sp. PCC 6803 slr2007 -125 3.8 ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803 slr2009 -125 3.8 ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803 slr2007 -107 4.3 ATTGTGATTGGTCTAT
Synechocystis sp. PCC 6803 slr2009 -107 4.3 ATTGTGATTGGTCTAT
Thermosynechococcus elongatus BP-1 tll1817 -219 5 ATTGATAAAAATCTAT
-193 4.4 ATTGACATTGATCTAA
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