Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of CcmR regulog to Thermosynechococcus elongatus BP-1

Reference regulog properties
Source regulog: CcmR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: repressor
Biological process: Carbon dioxide fixation
Effector:
Phylum: Cyanobacteria
Propagated regulon:
Target genome Thermosynechococcus elongatus BP-1
Orthologous TF(s) tlr2037
Regulated genes 4
Built upon 72 sites [see more]
Predicted regulatory interactions in Thermosynechococcus elongatus BP-1
Locus tag Position Score Sequence
Position: 30
Score: 3.7
Sequence: ATGGGTTTTGGTCTTT
Locus tag: tsl1814 (deprecated)
tsl1814 (deprecated) 30 3.7 ATGGGTTTTGGTCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mnhG
Ortholog function: Na/H antiporter, subunit G
Cyanothece sp. ATCC 51142 cce_1682 -232 4.5 ATAGTAATTAGCCTAT
-200 5 ATAGAATCTAGTCTAT
Cyanothece sp. PCC 7425 Cyan7425_3546 -121 4.7 ATTTATAAATATCTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A2378 -123 5.2 ATAGATATTAAACTAT
Synechocystis sp. PCC 6803 ssr3410 -125 3.8 ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803 ssr3410 -107 4.3 ATTGTGATTGGTCTAT
Thermosynechococcus elongatus BP-1 tsl1814 -219 5 ATTGATAAAAATCTAT
-193 4.4 ATTGACATTGATCTAA
Position: -219
Score: 5
Sequence: ATTGATAAAAATCTAT
Position: -193
Score: 4.4
Sequence: ATTGACATTGATCTAA
Locus tag: tll1818 (deprecated)
tll1818 (deprecated) -219 5 ATTGATAAAAATCTAT
-193 4.4 ATTGACATTGATCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mnhC
Ortholog function: Na/H antiporter, subunit C
Cyanothece sp. ATCC 51142 cce_1686 -232 4.5 ATAGTAATTAGCCTAT
-200 5 ATAGAATCTAGTCTAT
Cyanothece sp. PCC 7425 Cyan7425_3542 -121 4.7 ATTTATAAATATCTAT
Cyanothece sp. PCC 8801 PCC8801_2762 -56 4.8 ATAGGCTTTAAGCTAT
-24 4.7 ATAGTTTTTTGTATAT
Synechococcus sp. PCC 7002 SYNPCC7002_A2373 -123 5.2 ATAGATATTAAACTAT
Synechocystis sp. PCC 6803 slr2006 -125 3.8 ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803 slr2008 -125 3.8 ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803 slr2008 -107 4.3 ATTGTGATTGGTCTAT
Thermosynechococcus elongatus BP-1 tll1818 -219 5 ATTGATAAAAATCTAT
-193 4.4 ATTGACATTGATCTAA
Position: -124
Score: 4.1
Sequence: ATAGATTGTTTGCAAT
Locus tag: tlr2000 (deprecated)
tlr2000 (deprecated) -124 4.1 ATAGATTGTTTGCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cmpA
Ortholog function: Bicarbontate ABC transporter, substrate-binding protein
Cyanothece sp. ATCC 51142 cce_0305 -299 4.9 ATAGATAAATACCTAT
Cyanothece sp. PCC 7425 Cyan7425_4925 -286 5.2 ATAGACTTAGGGCTAT
Cyanothece sp. PCC 8801 PCC8801_3521 -268 4.5 ATACATATTAAGCTAT
Microcystis aeruginosa NIES-843 MAE_19990 -104 4.6 ATAGCTAAATTTCTAT
Synechococcus elongatus PCC 7942 Synpcc7942_1488 -186 4.9 ATTGACTTAGCTCTAT
Synechococcus sp. JA-3-3Ab CYA_0894 -185 4.2 ATAAACGGAAGTCTAT
-153 4.4 ATTGTATTGTTTCTAT
Synechocystis sp. PCC 6803 slr0040 -208 4.5 TTGGATATTTATCTAT
Thermosynechococcus elongatus BP-1 null -124 4.1 ATAGATTGTTTGCAAT
Position: -42
Score: 5.1
Sequence: ATAGAATTTCGTCTAT
Locus tag: tlr2037
tlr2037 -42 5.1 ATAGAATTTCGTCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmR
Ortholog function: Carbon assimilation transcriptional regulator, LysR family
Cyanothece sp. PCC 7425 Cyan7425_3855 -93 5.9 ATAGATTTTTGTCTAT
Gloeobacter violaceus PCC 7421 gll1001 -34 5.2 ATAGAACTATGTCTAT
Nostoc sp. PCC 7120 all0862 -285 5.8 ATAGATTTTTATCTAT
-146 5.8 ATAGATTTTTATCTAT
-72 4.9 CTAGTCTTATATCTAT
Synechococcus elongatus PCC 7942 Synpcc7942_1310 -34 5.7 ATAGACTTAAATCTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A0171 -63 5 ATTGACTCTAGTCTAT
Thermosynechococcus elongatus BP-1 tlr2037 -42 5.1 ATAGAATTTCGTCTAT
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