Propagation of CcmR regulog to Synechococcus sp. PCC 7002

Reference regulog properties
Source regulog:	CcmR - Cyanobacteria
Regulator type:	Transcription factor
Regulator family:	LysR
Regulation mode:	repressor
Biological process:	Carbon dioxide fixation
Effector:
Phylum:	Cyanobacteria
Propagated regulon:
Target genome	Synechococcus sp. PCC 7002
Orthologous TF(s)	SYNPCC7002_A0171
Regulated genes	7

Built upon 72 sites [see more]

Predicted regulatory interactions in *Synechococcus sp. PCC 7002*
	Locus tag	Position	Score	Sequence
Position: -294 Score: 4.4 Sequence: ATAGTCGAAAGACTAT Locus tag: SYNPCC7002_G0011
	SYNPCC7002_G0011	-294	4.4	ATAGTCGAAAGACTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: porB
Ortholog function: Low-CO2 inducible, outer membrane bicarbonate porin
Synechococcus sp. PCC 7002	SYNPCC7002_G0011	-294	4.4	ATAGTCGAAAGACTAT
Synechocystis sp. PCC 6803	slr0042	-208	4.5	TTGGATATTTATCTAT

Position: -63 Score: 5 Sequence: ATTGACTCTAGTCTAT Locus tag: SYNPCC7002_A0171
	SYNPCC7002_A0171	-63	5	ATTGACTCTAGTCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmR
Ortholog function: Carbon assimilation transcriptional regulator, LysR family
Cyanothece sp. PCC 7425	Cyan7425_3855	-93	5.9	ATAGATTTTTGTCTAT
Gloeobacter violaceus PCC 7421	gll1001	-34	5.2	ATAGAACTATGTCTAT
Nostoc sp. PCC 7120	all0862	-285	5.8	ATAGATTTTTATCTAT
		-146	5.8	ATAGATTTTTATCTAT
		-72	4.9	CTAGTCTTATATCTAT
Synechococcus elongatus PCC 7942	Synpcc7942_1310	-34	5.7	ATAGACTTAAATCTAT
Synechococcus sp. PCC 7002	SYNPCC7002_A0171	-63	5	ATTGACTCTAGTCTAT
Thermosynechococcus elongatus BP-1	tlr2037	-42	5.1	ATAGAATTTCGTCTAT

Position: -134 Score: 4.9 Sequence: ATAGAGCTAAATCTAT Locus tag: SYNPCC7002_A0470
	SYNPCC7002_A0470	-134	4.9	ATAGAGCTAAATCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sbtA
Ortholog function: High-affinity, low-flux sodium dependent bicarbonate transporter
Cyanothece sp. ATCC 51142	cce_2939	-181	4	ATAGATCGATATATAT
Cyanothece sp. PCC 7425	Cyan7425_5063	-94	4.2	TTTTACCTATGTCTAT
Cyanothece sp. PCC 8801	PCC8801_1249	-174	5.4	ATAGATAAATGTCTAT
Microcystis aeruginosa NIES-843	MAE_62090	-196	4.7	ATAGGTTTAAATCAAT
		-111	4.9	ATAGATTTATAACAAT
		-80	5	ATAAAGTTTTGTCTAT
Nostoc sp. PCC 7120	all2134	-191	4.6	ATAGAATTTTGGCTCT
		-173	4.8	ATAAATATTGATCTAT
Synechococcus elongatus PCC 7942	Synpcc7942_1475	-207	4.6	ATAGACAGGAATCTAT
Synechococcus sp. PCC 7002	SYNPCC7002_A0470	-134	4.9	ATAGAGCTAAATCTAT
Synechocystis sp. PCC 6803	slr1512	-182	4.7	ATAGACTTTAGCTTAT
		-136	5	ATAGACAAGAGTCTAT

Position: -131 Score: 4.6 Sequence: ATAGACTTAAAGATAT Position: -99 Score: 4.2 Sequence: ATAGAGTCTTGTCTTT Locus tag: SYNPCC7002_A0472
	SYNPCC7002_A0472	-131	4.6	ATAGACTTAAAGATAT
		-99	4.2	ATAGAGTCTTGTCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sbtB
Ortholog function: Predicted membrane protein
Cyanothece sp. ATCC 51142	cce_2937	-52	4.5	ATAGATTTTTGTCTTA
Cyanothece sp. PCC 7425	Cyan7425_5062	-94	4.2	TTTTACCTATGTCTAT
Cyanothece sp. PCC 8801	PCC8801_1248	-174	5.4	ATAGATAAATGTCTAT
Microcystis aeruginosa NIES-843	MAE_62100	-196	4.7	ATAGGTTTAAATCAAT
		-111	4.9	ATAGATTTATAACAAT
		-80	5	ATAAAGTTTTGTCTAT
Nostoc sp. PCC 7120	all2133	-191	4.6	ATAGAATTTTGGCTCT
		-173	4.8	ATAAATATTGATCTAT
Synechococcus sp. PCC 7002	SYNPCC7002_A0472	-131	4.6	ATAGACTTAAAGATAT
		-99	4.2	ATAGAGTCTTGTCTTT
Synechocystis sp. PCC 6803	slr1513	-182	4.7	ATAGACTTTAGCTTAT
		-136	5	ATAGACAAGAGTCTAT

Position: -123 Score: 5.2 Sequence: ATAGATATTAAACTAT Locus tag: SYNPCC7002_A2371
	SYNPCC7002_A2371	-123	5.2	ATAGATATTAAACTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bicA
Ortholog function: Bicarbonate transporter
Synechococcus sp. PCC 7002	SYNPCC7002_A2371	-123	5.2	ATAGATATTAAACTAT
Synechocystis sp. PCC 6803	sll0834	-76	4.4	CTAGAATATTCTCTAT
		-45	5.3	ATAGACTAAAGACTAT

Position: 12 Score: 3.8 Sequence: CTCGATATTTTTCTAA Locus tag: SYNPCC7002_A2376
	SYNPCC7002_A2376	12	3.8	CTCGATATTTTTCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mnhE
Ortholog function: Predicted Na/H antiporter, subunit E
Cyanothece sp. ATCC 51142	cce_1684	-232	4.5	ATAGTAATTAGCCTAT
		-200	5	ATAGAATCTAGTCTAT
Cyanothece sp. PCC 7425	Cyan7425_3544	-121	4.7	ATTTATAAATATCTAT
Cyanothece sp. PCC 8801	PCC8801_2760	-56	4.8	ATAGGCTTTAAGCTAT
		-24	4.7	ATAGTTTTTTGTATAT
Synechococcus sp. PCC 7002	SYNPCC7002_A2376	-123	5.2	ATAGATATTAAACTAT
Synechocystis sp. PCC 6803	slr2010	-125	3.8	ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803	slr2010	-107	4.3	ATTGTGATTGGTCTAT
Thermosynechococcus elongatus BP-1	tll1816	-219	5	ATTGATAAAAATCTAT
		-193	4.4	ATTGACATTGATCTAA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of CcmR regulog to Synechococcus sp. PCC 7002

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --