Propagation of NtcA regulog to Microcystis aeruginosa NIES-843

Reference regulog properties
Source regulog:	NtcA - Cyanobacteria
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	activator
Biological process:	Nitrogen assimilation
Effector:	2-oxoglutarate
Phylum:	Cyanobacteria
Propagated regulon:
Target genome	Microcystis aeruginosa NIES-843
Orthologous TF(s)	MAE_01830
Regulated genes	23

Built upon 228 sites [see more]

Predicted regulatory interactions in *Microcystis aeruginosa NIES-843*
	Locus tag	Position	Score	Sequence
Position: -8 Score: 3.8 Sequence: GGTTGACAATGTTACA Locus tag: MAE_06180
	MAE_06180	-8	3.8	GGTTGACAATGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: urtE
Ortholog function: Urea ABC transporter, ATP-binding protein 2
Cyanothece sp. PCC 7425	Cyan7425_2256	-148	3.7	TGTATAATAGATCACA
Microcystis aeruginosa NIES-843	MAE_06180	-8	3.8	GGTTGACAATGTTACA
Nostoc sp. PCC 7120	all1947	-116	4.3	AGTATCAAAAATAACA
Prochlorococcus marinus str. MIT 9313	PMT2225	-146	4	TGTTGCAACAGCTACC
		-95	4.7	TGTATCATTCACTACA
Synechococcus sp. JA-3-3Ab	CYA_1920	-248	3.9	AGAAACAGAAGCTACA
Synechococcus sp. WH 8102	SYNW2438	-118	4	TGTTGCAACAGCTACC
Thermosynechococcus elongatus BP-1	tlr1124	-81	4	TGTAGCCTAGCATACA

Position: -170 Score: 4.7 Sequence: AGTAGCAAAAATTACA Position: -140 Score: 4.6 Sequence: AGTAGCGAAAGTTACA Locus tag: MAE_06220
	MAE_06220	-170	4.7	AGTAGCAAAAATTACA
		-140	4.6	AGTAGCGAAAGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: urtA
Ortholog function: Urea ABC transporter, substrate-binding protein
Synechococcus sp. PCC 7002	SYNPCC7002_A0398	-127	4.1	TGTATCAAGTGTCACA
Synechocystis sp. PCC 6803	slr0447	-211	4.5	GGTATCCTATGCTACA
Cyanothece sp. PCC 7425	Cyan7425_2260	-148	3.7	TGTATAATAGATCACA
Microcystis aeruginosa NIES-843	MAE_06220	-170	4.7	AGTAGCAAAAATTACA
		-140	4.6	AGTAGCGAAAGTTACA
Nostoc sp. PCC 7120	all1951	-116	4.3	AGTATCAAAAATAACA
Trichodesmium erythraeum IMS101	Tery_0130	-390	3.8	AGTTACAAAAAAAACA
Synechococcus sp. JA-3-3Ab	CYA_1924	-272	3.7	GGTATCCCGCGATACA
Thermosynechococcus elongatus BP-1	tlr1120	-81	4	TGTAGCCTAGCATACA

Position: -75 Score: 3.7 Sequence: TGTAAACTGGGAAACA Locus tag: MAE_14410
	MAE_14410	-75	3.7	TGTAAACTGGGAAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A1954
Ortholog function: putative two-component sensor histidine kinase
Cyanothece sp. PCC 8801	PCC8801_3053	-198	4.8	TGTAATCATAGTTACA
Microcystis aeruginosa NIES-843	MAE_14410	-75	3.7	TGTAAACTGGGAAACA
Nostoc sp. PCC 7120	alr3982	-250	4.6	TGTAGTGATAGCTACA
Trichodesmium erythraeum IMS101	Tery_3912	-156	4.3	TGTAGTTATGGCTACC

Position: -38 Score: 4.9 Sequence: TGTAAATTTAGATACA Locus tag: MAE_14840
	MAE_14840	-38	4.9	TGTAAATTTAGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A2101
Ortholog function: Conserved hypothetical protein
Synechococcus sp. PCC 7002	SYNPCC7002_A2101	67	5	TGTATCATtaaATACA
Cyanothece sp. PCC 7425	Cyan7425_0732	-33	5.2	TGTATCATAAGCTACA
Cyanothece sp. PCC 7425	Cyan7425_0732	-33	5.2	TGTATCATAAGCTACA
Microcystis aeruginosa NIES-843	MAE_14840	-38	4.9	TGTAAATTTAGATACA
Microcystis aeruginosa NIES-843	MAE_14840	-38	4.9	TGTAAATTTAGATACA

Position: -190 Score: 4.1 Sequence: TGTTACAGACAATACA Locus tag: MAE_18410
	MAE_18410	-190	4.1	TGTTACAGACAATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirA
Ortholog function: Nitrite reductase, ferredoxin dependent
Synechococcus sp. PCC 7002	SYNPCC7002_A1827	-111	4	CGTAGTTAACACTACA
Synechocystis sp. PCC 6803	slr0898	-74	4.7	TGTAATTTACGTTACA
Cyanothece sp. ATCC 51142	cce_1223	-76	4.7	TGTTACATTAGCTACA
Cyanothece sp. PCC 8801	PCC8801_2468	-75	4.6	TGTTACAATTAATACA
Cyanothece sp. PCC 7425	Cyan7425_4573	-123	4.5	TGTAACTTAATATACC
Microcystis aeruginosa NIES-843	MAE_18410	-190	4.1	TGTTACAGACAATACA
Trichodesmium erythraeum IMS101	Tery_1068	-276	3.8	TGTATTTTTATATAGT
		-199	4.1	TGTTATATAAGCTACG
Synechococcus elongatus PCC 7942	Synpcc7942_1240	-220	4.9	TGTAGCAATTGCTACT
		-149	4.3	AGTATCAATGATTACT
		-80	4.4	TGTAGTTTCTGTTACC
Synechococcus sp. JA-3-3Ab	CYA_0612	-72	3.9	TGTAACTGCCAATACC
Gloeobacter violaceus PCC 7421	gvip212	-146	4	TGTATCTGGGGTTACG
Thermosynechococcus elongatus BP-1	tlr1349	-82	4.6	AGTAGCAAAATTTACA

Position: -68 Score: 4.8 Sequence: TGTATCTTTAGCTACT Locus tag: MAE_18580
	MAE_18580	-68	4.8	TGTATCTTTAGCTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0264
Ortholog function: Conserved hypothetical protein
Synechococcus sp. PCC 7002	SYNPCC7002_A0264	-29	5	TGTATCAAATACTACA
Microcystis aeruginosa NIES-843	MAE_18580	-68	4.8	TGTATCTTTAGCTACT
Nostoc sp. PCC 7120	all1327	-52	4.3	CGTAGTGTATGTTACA

Position: -141 Score: 3.8 Sequence: AGTTATTTTAAATACT Locus tag: MAE_22930
	MAE_22930	-141	3.8	AGTTATTTTAAATACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: coxB
Ortholog function: Cytochrome c oxidase subunit 2 (EC 1.9.3.1)
Cyanothece sp. PCC 8801	PCC8801_0567	-148	3.8	TTTATTATTTGTTACC
Microcystis aeruginosa NIES-843	MAE_22930	-141	3.8	AGTTATTTTAAATACT

Position: -314 Score: 3.1 Sequence: AGTATCATTAATTTTT Locus tag: MAE_38140
	MAE_38140	-314	3.1	AGTATCATTAATTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifJ
Ortholog function: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
Synechococcus sp. PCC 7002	SYNPCC7002_A1443	-272	4.1	TTTATCATTTTCTACA
Synechocystis sp. PCC 6803	sll0741	-181	3.3	AGAATCAACAAAAACA
Cyanothece sp. ATCC 51142	cce_0953	-52	3.8	TGCAACAAAAATTACC
Cyanothece sp. PCC 8801	PCC8801_3918	-265	3.5	AGTAACCATAATTATT
Cyanothece sp. PCC 7425	Cyan7425_4369	-120	3.1	TCTAACGTATTCTCCA
Nostoc sp. PCC 7120	alr1911	-281	3.2	TGAATTTGATGTAACC

Position: -87 Score: 4.2 Sequence: TGTAATCATCTTTACA Locus tag: MAE_38700
	MAE_38700	-87	4.2	TGTAATCATCTTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A2395
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002	SYNPCC7002_A2395	-200	4.5	TGTTACTTAAATTACA
		-92	4.5	TGTAGTAGACGTTACA
Cyanothece sp. ATCC 51142	cce_2729	-148	4	TGTAACATATGATAAC
		-87	4.6	TGTAATATTGATTACA
Cyanothece sp. PCC 8801	PCC8801_2066	-53	4.8	TGTAATATTAATTACA
Cyanothece sp. PCC 7425	Cyan7425_0833	-38	3.7	AGTAGTTTAATAAACT
Microcystis aeruginosa NIES-843	MAE_38700	-87	4.2	TGTAATCATCTTTACA
Nostoc sp. PCC 7120	alr4308	-64	3.9	GGTAGTCGGAGTTACA
Trichodesmium erythraeum IMS101	Tery_0672	-94	4.3	AGTATTCAAAATTACA
Synechococcus sp. JA-3-3Ab	CYA_0570	-139	3.9	GGTAAGATAAAATACA
		-81	4.2	CGTATCAAAGGCTACT
Thermosynechococcus elongatus BP-1	tlr1468	-85	4.3	TGTAGTTGAGTTTACA

Position: -99 Score: 4.3 Sequence: TGTAATCGTCGATACA Locus tag: MAE_39690
	MAE_39690	-99	4.3	TGTAATCGTCGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0076
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002	SYNPCC7002_A0076	-97	4.2	AGTATTGAAATATACA
Synechocystis sp. PCC 6803	ssr1562	-78	4.5	TGTAATCGATAATACA
Cyanothece sp. ATCC 51142	cce_0537	-137	4	TGTAAACTATGATATA
		-93	4.8	TGTAGTCTTTGTTACA
Cyanothece sp. PCC 8801	PCC8801_3101	-95	4.6	TGTATTGGTTGTTACA
Microcystis aeruginosa NIES-843	MAE_39690	-99	4.3	TGTAATCGTCGATACA

Position: -257 Score: 3.6 Sequence: TGAATTATTGATTACT Position: -213 Score: 4.6 Sequence: TGTATCAACGAATACA Locus tag: MAE_40010
	MAE_40010	-257	3.6	TGAATTATTGATTACT
		-213	4.6	TGTATCAACGAATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: ammonium transporter
Synechococcus sp. PCC 7002	SYNPCC7002_A2208	-52	3.7	GGTTACTTCTGCTACC
Synechocystis sp. PCC 6803	sll0108	-189	4	AGTAGTAAATCATACA
		-18	4.4	TGTAGATTAAAGTACA
Cyanothece sp. ATCC 51142	cce_3261	-152	3.5	TGTtAaggtTGTaACA
Cyanothece sp. PCC 8801	PCC8801_1229	-264	5	TGTATTTTTTGATACA
		-229	4.1	AGTAATAAAAAAAACA
Microcystis aeruginosa NIES-843	MAE_40010	-213	4.6	TGTATCAACGAATACA
Trichodesmium erythraeum IMS101	Tery_4477	-83	4.9	AGTAGCATTTGATACA
Synechococcus elongatus PCC 7942	Synpcc7942_0442	-151	4.1	TGTTACATCGATTACA
Prochlorococcus marinus str. MIT 9313	PMT1853	-160	3.8	TGTAACAAAATGAACT
Synechococcus sp. WH 8102	SYNW0253	-100	4.2	TGTATCAATTAACACA
Thermosynechococcus elongatus BP-1	amt1	-190	4.4	TGTATAACGTGATACA

Position: 14 Score: 3.5 Sequence: AGTTGTTCAAGATACC Locus tag: MAE_47880
	MAE_47880	14	3.5	AGTTGTTCAAGATACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbcX
Ortholog function: Predicted RuBisCo chaperone
Nostoc sp. PCC 7120	alr1525	-32	3.6	AGTAAAAAGAGTGACA

Position: -88 Score: 4.8 Sequence: TGTATTAATAACTACA Locus tag: MAE_53960
	MAE_53960	-88	4.8	TGTATTAATAACTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narB
Ortholog function: Nitrate reductase
Synechocystis sp. PCC 6803	sll1454	-96	3.9	AGTTACAAACTATACA
Cyanothece sp. PCC 8801	PCC8801_2463	-165	4.4	TGTATtAccaaATACA
Microcystis aeruginosa NIES-843	MAE_53960	-88	4.8	TGTATTAATAACTACA
Trichodesmium erythraeum IMS101	Tery_1070	-276	3.8	TGTATTTTTATATAGT
		-199	4.1	TGTTATATAAGCTACG
Synechococcus elongatus PCC 7942	Synpcc7942_1235	-220	4.9	TGTAGCAATTGCTACT
		-149	4.3	AGTATCAATGATTACT
		-80	4.4	TGTAGTTTCTGTTACC
Thermosynechococcus elongatus BP-1	tlr1355	-82	4.6	AGTAGCAAAATTTACA

Position: -126 Score: 4.9 Sequence: TGTAATTAAAGCTACA Locus tag: MAE_54470
	MAE_54470	-126	4.9	TGTAATTAAAGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpoD
Ortholog function: RNA polymerase sigma 70 factor
Synechocystis sp. PCC 6803	slr0653	-246	3.9	TGTTATCGAGGCTACA
Cyanothece sp. ATCC 51142	cce_0875	-232	4.3	AGTAATCAAGGCTACA
Cyanothece sp. PCC 8801	PCC8801_0154	-257	4.4	TGTAATCGAGGCTACA
Microcystis aeruginosa NIES-843	MAE_54470	-126	4.9	TGTAATTAAAGCTACA
Trichodesmium erythraeum IMS101	Tery_5068	-199	4	TGTAAAATTTTGTACC
		-46	3.7	TGTAAAATAATTTATT

Position: -30 Score: 3.7 Sequence: CGTATAGATAAATACT Locus tag: MAE_62530
	MAE_62530	-30	3.7	CGTATAGATAAATACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: icd
Ortholog function: Isocitrate dehydrogenase (NADP+)
Microcystis aeruginosa NIES-843	MAE_62530	-30	3.7	CGTATAGATAAATACT
Nostoc sp. PCC 7120	alr1827	-6	3.4	TGAAATATGTACAACA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of NtcA regulog to Microcystis aeruginosa NIES-843

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --