Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of PedR regulog to Crocosphaera watsonii WH 8501

Reference regulog properties
Source regulog: PedR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: repressor (activator)
Biological process: Photosynthesis; Carbon fixation
Effector: Trx, thioredoxin protein
Phylum: Cyanobacteria
Propagated regulon:
Target genome Crocosphaera watsonii WH 8501
Orthologous TF(s) CwatDRAFT_0935
Regulated genes 7
Built upon 56 sites [see more]
Predicted regulatory interactions in Crocosphaera watsonii WH 8501
Locus tag Position Score Sequence
Position: -185
Score: 3.5
Sequence: AGGCAATTTTTACT
Locus tag: CwatDRAFT_4016
CwatDRAFT_4016 -185 3.5 AGGCAATTTTTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlL
Ortholog function: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
Cyanothece sp. ATCC 51142 cce_4532 -155 4.3 AAGCAATTTTTCTC
Cyanothece sp. PCC 8801 PCC8801_0791 -42 4.2 AGGCAAATACACTT
Microcystis aeruginosa NIES-843 MAE_16230 -223 3.6 AAGTAAATGTATAA
Synechocystis sp. PCC 6803 slr0749 -196 4.8 AAGTAACTATACCC
-178 4 AAGTTATTTTATTT
Position: -29
Score: 4.7
Sequence: AAGTAAATGTACTA
Locus tag: CwatDRAFT_0935
CwatDRAFT_0935 -29 4.7 AAGTAAATGTACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pedR
Ortholog function: Thioredoxin status sensitive transcription regulator, LuxR family
Cyanothece sp. ATCC 51142 cce_4720 -29 4.7 AAGTAAATGTACTA
Cyanothece sp. PCC 7425 Cyan7425_0293 -28 4.3 AAGTAATTGTACGG
Cyanothece sp. PCC 8801 PCC8801_4139 -28 4.7 AAGTAAATGTACTA
Microcystis aeruginosa NIES-843 MAE_54580 -28 4.7 AAGTAAATATACGA
Nostoc sp. PCC 7120 asl2551 -194 4.5 AAGTATATTTAATT
-33 4.6 AAGTACATATACCA
Prochlorococcus marinus str. MIT 9313 PMT2014 -366 3.7 AAGTAAATCTGATT
Synechococcus elongatus PCC 7942 Synpcc7942_2264 -30 4.7 AAGTACAAATACTT
Synechococcus sp. PCC 7002 SYNPCC7002_A0641 -257 3.7 AAGAAAGTTTATCT
Synechocystis sp. PCC 6803 ssl0564 -28 4.8 GAGTAAATATACCT
Thermosynechococcus elongatus BP-1 null -22 4.6 AAGTAATTATACGG
Trichodesmium erythraeum IMS101 Tery_2735 -34 5.2 AAGCAAATATACTT
Position: -19
Score: 4.3
Sequence: GAGTATTTATTCTT
Locus tag: CwatDRAFT_0934
CwatDRAFT_0934 -19 4.3 GAGTATTTATTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndhD
Ortholog function: NADH dehydrogenase subunit
Cyanothece sp. ATCC 51142 cce_3522 -19 4.2 GAGTATTTATTCCT
Synechococcus sp. PCC 7002 SYNPCC7002_A1973 -20 4.5 AAGTATTTTTTCCT
Position: -255
Score: 3.3
Sequence: AAATAAAAAGACTC
Position: -97
Score: 3.5
Sequence: AGGCAATTTTTACT
Position: -82
Score: 3.4
Sequence: ATGTAACATTATTT
Position: -33
Score: 3.4
Sequence: AATCAAGATTATTT
Position: -29
Score: 3.5
Sequence: AAGATTATTTACCA
Locus tag: CwatDRAFT_0967
CwatDRAFT_0967 -255 3.3 AAATAAAAAGACTC
-97 3.5 AGGCAATTTTTACT
-82 3.4 ATGTAACATTATTT
-33 3.4 AATCAAGATTATTT
-29 3.5 AAGATTATTTACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlB
Ortholog function: Light-independent protochlorophyllide reductase subunit B
Microcystis aeruginosa NIES-843 MAE_53860 -319 4.5 AAGCAAAATTACCG
Nostoc sp. PCC 7120 alr3441 -56 3.7 AAGCACTTATAGTC
Synechococcus sp. PCC 7002 SYNPCC7002_A1652 -14 4.6 GAGTAAAAATACCT
Synechocystis sp. PCC 6803 slr0772 -182 3.4 AAGCATTAAGAATT
Trichodesmium erythraeum IMS101 Tery_3812 -177 4.1 AGTTAAAAATACTT
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