Propagation of PedR regulog to Crocosphaera watsonii WH 8501
| Source regulog: | PedR - Cyanobacteria |
| Regulator type: | Transcription factor |
| Regulator family: | LuxR |
| Regulation mode: | repressor (activator) |
| Biological process: | Photosynthesis; Carbon fixation |
| Effector: | Trx, thioredoxin protein |
| Phylum: | Cyanobacteria |
| Propagated regulon: | |
| Target genome | Crocosphaera watsonii WH 8501 |
| Orthologous TF(s) | CwatDRAFT_0935 |
| Regulated genes | 7 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -185
Score: 3.5 Sequence: AGGCAATTTTTACT
Locus tag: CwatDRAFT_4016
|
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| CwatDRAFT_4016 | -185 | 3.5 | AGGCAATTTTTACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: chlL | ||||
| Ortholog function: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | ||||
| Cyanothece sp. ATCC 51142 | cce_4532 | -155 | 4.3 | AAGCAATTTTTCTC |
| Cyanothece sp. PCC 8801 | PCC8801_0791 | -42 | 4.2 | AGGCAAATACACTT |
| Microcystis aeruginosa NIES-843 | MAE_16230 | -223 | 3.6 | AAGTAAATGTATAA |
| Synechocystis sp. PCC 6803 | slr0749 | -196 | 4.8 | AAGTAACTATACCC |
| -178 | 4 | AAGTTATTTTATTT | ||
|
Position: -29
Score: 4.7 Sequence: AAGTAAATGTACTA
Locus tag: CwatDRAFT_0935
|
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| CwatDRAFT_0935 | -29 | 4.7 | AAGTAAATGTACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pedR | ||||
| Ortholog function: Thioredoxin status sensitive transcription regulator, LuxR family | ||||
| Cyanothece sp. ATCC 51142 | cce_4720 | -29 | 4.7 | AAGTAAATGTACTA |
| Cyanothece sp. PCC 7425 | Cyan7425_0293 | -28 | 4.3 | AAGTAATTGTACGG |
| Cyanothece sp. PCC 8801 | PCC8801_4139 | -28 | 4.7 | AAGTAAATGTACTA |
| Microcystis aeruginosa NIES-843 | MAE_54580 | -28 | 4.7 | AAGTAAATATACGA |
| Nostoc sp. PCC 7120 | asl2551 | -194 | 4.5 | AAGTATATTTAATT |
| -33 | 4.6 | AAGTACATATACCA | ||
| Prochlorococcus marinus str. MIT 9313 | PMT2014 | -366 | 3.7 | AAGTAAATCTGATT |
| Synechococcus elongatus PCC 7942 | Synpcc7942_2264 | -30 | 4.7 | AAGTACAAATACTT |
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0641 | -257 | 3.7 | AAGAAAGTTTATCT |
| Synechocystis sp. PCC 6803 | ssl0564 | -28 | 4.8 | GAGTAAATATACCT |
| Thermosynechococcus elongatus BP-1 | null | -22 | 4.6 | AAGTAATTATACGG |
| Trichodesmium erythraeum IMS101 | Tery_2735 | -34 | 5.2 | AAGCAAATATACTT |
|
Position: -19
Score: 4.3 Sequence: GAGTATTTATTCTT
Locus tag: CwatDRAFT_0934
|
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| CwatDRAFT_0934 | -19 | 4.3 | GAGTATTTATTCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ndhD | ||||
| Ortholog function: NADH dehydrogenase subunit | ||||
| Cyanothece sp. ATCC 51142 | cce_3522 | -19 | 4.2 | GAGTATTTATTCCT |
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1973 | -20 | 4.5 | AAGTATTTTTTCCT |
|
Position: -255
Score: 3.3 Sequence: AAATAAAAAGACTC
Position: -97
Score: 3.5 Sequence: AGGCAATTTTTACT
Position: -82
Score: 3.4 Sequence: ATGTAACATTATTT
Position: -33
Score: 3.4 Sequence: AATCAAGATTATTT
Position: -29
Score: 3.5 Sequence: AAGATTATTTACCA
Locus tag: CwatDRAFT_0967
|
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| CwatDRAFT_0967 | -255 | 3.3 | AAATAAAAAGACTC | |
| -97 | 3.5 | AGGCAATTTTTACT | ||
| -82 | 3.4 | ATGTAACATTATTT | ||
| -33 | 3.4 | AATCAAGATTATTT | ||
| -29 | 3.5 | AAGATTATTTACCA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: chlB | ||||
| Ortholog function: Light-independent protochlorophyllide reductase subunit B | ||||
| Microcystis aeruginosa NIES-843 | MAE_53860 | -319 | 4.5 | AAGCAAAATTACCG |
| Nostoc sp. PCC 7120 | alr3441 | -56 | 3.7 | AAGCACTTATAGTC |
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1652 | -14 | 4.6 | GAGTAAAAATACCT |
| Synechocystis sp. PCC 6803 | slr0772 | -182 | 3.4 | AAGCATTAAGAATT |
| Trichodesmium erythraeum IMS101 | Tery_3812 | -177 | 4.1 | AGTTAAAAATACTT |