Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NtcA regulog to Crocosphaera watsonii WH 8501

Reference regulog properties
Source regulog: NtcA - Cyanobacteria
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Phylum: Cyanobacteria
Propagated regulon:
Target genome Crocosphaera watsonii WH 8501
Orthologous TF(s) CwatDRAFT_0834
Regulated genes 27
Built upon 228 sites [see more]
Predicted regulatory interactions in Crocosphaera watsonii WH 8501
Locus tag Position Score Sequence
Position: -333
Score: 3.4
Sequence: TCTTGAATGAGCTACA
Position: 2
Score: 3.6
Sequence: GGTATCAACAAGAACA
Locus tag: CwatDRAFT_6547
CwatDRAFT_6547 -333 3.4 TCTTGAATGAGCTACA
2 3.6 GGTATCAACAAGAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: ammonium transporter
Synechococcus sp. PCC 7002 SYNPCC7002_A2208 -52 3.7 GGTTACTTCTGCTACC
Synechocystis sp. PCC 6803 sll0108 -189 4 AGTAGTAAATCATACA
-18 4.4 TGTAGATTAAAGTACA
Cyanothece sp. ATCC 51142 cce_3261 -152 3.5 TGTtAaggtTGTaACA
Cyanothece sp. PCC 8801 PCC8801_1229 -264 5 TGTATTTTTTGATACA
-229 4.1 AGTAATAAAAAAAACA
Microcystis aeruginosa NIES-843 MAE_40010 -213 4.6 TGTATCAACGAATACA
Trichodesmium erythraeum IMS101 Tery_4477 -83 4.9 AGTAGCATTTGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_0442 -151 4.1 TGTTACATCGATTACA
Prochlorococcus marinus str. MIT 9313 PMT1853 -160 3.8 TGTAACAAAATGAACT
Synechococcus sp. WH 8102 SYNW0253 -100 4.2 TGTATCAATTAACACA
Thermosynechococcus elongatus BP-1 amt1 -190 4.4 TGTATAACGTGATACA
Position: -90
Score: 4.7
Sequence: AGTAGCAAATTATACA
Locus tag: CwatDRAFT_5271
CwatDRAFT_5271 -90 4.7 AGTAGCAAATTATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: glutamine synthetase, type I
Synechococcus sp. PCC 7002 SYNPCC7002_A1630 -125 3.5 TGTgACccAgacTACA
Synechocystis sp. PCC 6803 slr1756 -98 4.3 GGTAGCGAAAAATACA
Cyanothece sp. ATCC 51142 cce_4432 -89 4.5 AGTATCCAATTATACA
-30 4 TGTATATATTGAAACC
Cyanothece sp. PCC 8801 PCC8801_0808 -92 4 CGTATCATGGTATACA
Cyanothece sp. PCC 7425 Cyan7425_1839 -221 4.9 TGTAACTCATGATACA
Microcystis aeruginosa NIES-843 MAE_19270 -92 4.7 TGTATCgaAaaATACA
Nostoc sp. PCC 7120 alr2328 -142 4.8 TGTAACAAAGACTACA
Trichodesmium erythraeum IMS101 Tery_3834 -250 4 CGTAACACCCGATACA
Synechococcus elongatus PCC 7942 Synpcc7942_2156 -194 4.8 TGTATCAgcTGTTACA
Prochlorococcus marinus str. MIT 9313 PMT0601 -79 4.2 GGTACCTGTTGCTACA
Synechococcus sp. JA-3-3Ab CYA_1363 -138 4.3 CGTATCAGAAACTACA
Gloeobacter violaceus PCC 7421 gvip146 -116 4 CGTATCTCAGACTACA
Position: -231
Score: 4.1
Sequence: AGTAATCGAGGCTACA
Locus tag: CwatDRAFT_5683
CwatDRAFT_5683 -231 4.1 AGTAATCGAGGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpoD
Ortholog function: RNA polymerase sigma 70 factor
Synechocystis sp. PCC 6803 slr0653 -246 3.9 TGTTATCGAGGCTACA
Cyanothece sp. ATCC 51142 cce_0875 -232 4.3 AGTAATCAAGGCTACA
Cyanothece sp. PCC 8801 PCC8801_0154 -257 4.4 TGTAATCGAGGCTACA
Microcystis aeruginosa NIES-843 MAE_54470 -126 4.9 TGTAATTAAAGCTACA
Trichodesmium erythraeum IMS101 Tery_5068 -199 4 TGTAAAATTTTGTACC
-46 3.7 TGTAAAATAATTTATT
Position: -87
Score: 4.6
Sequence: TGTAATATTGATTACA
Locus tag: CwatDRAFT_4764
CwatDRAFT_4764 -87 4.6 TGTAATATTGATTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A2395
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A2395 -200 4.5 TGTTACTTAAATTACA
-92 4.5 TGTAGTAGACGTTACA
Cyanothece sp. ATCC 51142 cce_2729 -148 4 TGTAACATATGATAAC
-87 4.6 TGTAATATTGATTACA
Cyanothece sp. PCC 8801 PCC8801_2066 -53 4.8 TGTAATATTAATTACA
Cyanothece sp. PCC 7425 Cyan7425_0833 -38 3.7 AGTAGTTTAATAAACT
Microcystis aeruginosa NIES-843 MAE_38700 -87 4.2 TGTAATCATCTTTACA
Nostoc sp. PCC 7120 alr4308 -64 3.9 GGTAGTCGGAGTTACA
Trichodesmium erythraeum IMS101 Tery_0672 -94 4.3 AGTATTCAAAATTACA
Synechococcus sp. JA-3-3Ab CYA_0570 -139 3.9 GGTAAGATAAAATACA
-81 4.2 CGTATCAAAGGCTACT
Thermosynechococcus elongatus BP-1 tlr1468 -85 4.3 TGTAGTTGAGTTTACA
Position: -97
Score: 4.4
Sequence: TGTAACCCTAGTTACT
Locus tag: CwatDRAFT_4581
CwatDRAFT_4581 -97 4.4 TGTAACCCTAGTTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase, type II
Synechocystis sp. PCC 6803 slr0851 -72 4.1 TGTAACAACCATTACC
Cyanothece sp. ATCC 51142 cce_0624 -47 4.7 TGTAACTGTAGTTACT
Cyanothece sp. PCC 8801 PCC8801_3485 -117 4.6 TGTAACCATAGCTACT
-92 3.8 CGTAATTGGTTTTACA
Position: -77
Score: 4.7
Sequence: TGTTACATTAGCTACA
Locus tag: CwatDRAFT_3683
CwatDRAFT_3683 -77 4.7 TGTTACATTAGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirA
Ortholog function: Nitrite reductase, ferredoxin dependent
Synechococcus sp. PCC 7002 SYNPCC7002_A1827 -111 4 CGTAGTTAACACTACA
Synechocystis sp. PCC 6803 slr0898 -74 4.7 TGTAATTTACGTTACA
Cyanothece sp. ATCC 51142 cce_1223 -76 4.7 TGTTACATTAGCTACA
Cyanothece sp. PCC 8801 PCC8801_2468 -75 4.6 TGTTACAATTAATACA
Cyanothece sp. PCC 7425 Cyan7425_4573 -123 4.5 TGTAACTTAATATACC
Microcystis aeruginosa NIES-843 MAE_18410 -190 4.1 TGTTACAGACAATACA
Trichodesmium erythraeum IMS101 Tery_1068 -276 3.8 TGTATTTTTATATAGT
-199 4.1 TGTTATATAAGCTACG
Synechococcus elongatus PCC 7942 Synpcc7942_1240 -220 4.9 TGTAGCAATTGCTACT
-149 4.3 AGTATCAATGATTACT
-80 4.4 TGTAGTTTCTGTTACC
Synechococcus sp. JA-3-3Ab CYA_0612 -72 3.9 TGTAACTGCCAATACC
Gloeobacter violaceus PCC 7421 gvip212 -146 4 TGTATCTGGGGTTACG
Thermosynechococcus elongatus BP-1 tlr1349 -82 4.6 AGTAGCAAAATTTACA
Position: -139
Score: 3.8
Sequence: TGTATATGGTTTTACC
Position: -117
Score: 4.4
Sequence: TGTAACATTTATTATA
Locus tag: CwatDRAFT_3583
CwatDRAFT_3583 -139 3.8 TGTATATGGTTTTACC
-117 4.4 TGTAACATTTATTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: icd
Ortholog function: Isocitrate dehydrogenase (NADP+)
Microcystis aeruginosa NIES-843 MAE_62530 -30 3.7 CGTATAGATAAATACT
Nostoc sp. PCC 7120 alr1827 -6 3.4 TGAAATATGTACAACA
Position: -207
Score: 4.7
Sequence: TGTAGTCATAGTTACA
Locus tag: CwatDRAFT_3010
CwatDRAFT_3010 -207 4.7 TGTAGTCATAGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A1954
Ortholog function: putative two-component sensor histidine kinase
Synechococcus sp. PCC 7002 SYNPCC7002_A1954 -243 4.7 TGTAACAGGAGTTACA
Synechocystis sp. PCC 6803 slr1147 -214 4.7 TGTAATGATAGTTACA
Cyanothece sp. ATCC 51142 cce_3327 -210 4.7 TGTAGTCATAGTTACA
-46 4 TTTATTTTCTGTTACA
Synechococcus sp. WH 8102 SYNW0246 -143 4.1 TGTAACTTTGGTTGCA
Thermosynechococcus elongatus BP-1 tlr0195 -111 4.2 TGTAACCTATCTTACA
Position: -231
Score: 3.7
Sequence: TGTAATAAAAAATTCC
Locus tag: CwatDRAFT_2714
CwatDRAFT_2714 -231 3.7 TGTAATAAAAAATTCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbcL
Ortholog function: RuBisCO large subunit (EC 4.1.1.39)
Synechocystis sp. PCC 6803 slr0009 -228 4.3 TGTAATTTAAAAAACA
Nostoc sp. PCC 7120 alr1524 -32 3.6 AGTAAAAAGAGTGACA
Trichodesmium erythraeum IMS101 Tery_4410 -293 3.4 GATAACTATTACTACG
Position: -74
Score: 4
Sequence: AGTATAAATTTCTACG
Locus tag: CwatDRAFT_3020
CwatDRAFT_3020 -74 4 AGTATAAATTTCTACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcB
Ortholog function: Nitrogen assimilation transcriptional activator, LysR family
Synechococcus sp. PCC 7002 SYNPCC7002_A1632 -87 3.9 TGTAACATccGgaACA
Cyanothece sp. ATCC 51142 cce_0198 -73 4.2 AGTATCAATTTCTACG
Cyanothece sp. PCC 8801 PCC8801_2329 -80 4.7 TGTATCAAATTCTACT
Cyanothece sp. PCC 7425 Cyan7425_1599 -78 4.6 TGTATCACTATCTACA
Microcystis aeruginosa NIES-843 MAE_09380 -80 4.1 gGTAgCAatTtcTACc
Nostoc sp. PCC 7120 all0602 -80 4.5 TGTAACAAAATCTACC
-21 4.7 TGTAATTAAGGCTACA
Trichodesmium erythraeum IMS101 Tery_4333 -27 4 TGTATAAAATAACACA
Synechococcus elongatus PCC 7942 Synpcc7942_1242 -153 4.3 AGTAATCATTGATACT
-82 4.9 AGTAGCAATTGCTACA
Synechococcus sp. JA-3-3Ab CYA_0984 -89 4.2 TGTAACGGTGTTTACA
Gloeobacter violaceus PCC 7421 gvip213 -46 4 CGTAACCCCAGATACA
Thermosynechococcus elongatus BP-1 null -122 3.9 TGTATCAATCAACACA
Position: -321
Score: 3.6
Sequence: ATTAATAATAGTTACT
Position: -203
Score: 3.4
Sequence: TGTTGTTTGAATTATA
Locus tag: CwatDRAFT_1801
CwatDRAFT_1801 -321 3.6 ATTAATAATAGTTACT
-203 3.4 TGTTGTTTGAATTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifJ
Ortholog function: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
Synechococcus sp. PCC 7002 SYNPCC7002_A1443 -272 4.1 TTTATCATTTTCTACA
Synechocystis sp. PCC 6803 sll0741 -181 3.3 AGAATCAACAAAAACA
Cyanothece sp. ATCC 51142 cce_0953 -52 3.8 TGCAACAAAAATTACC
Cyanothece sp. PCC 8801 PCC8801_3918 -265 3.5 AGTAACCATAATTATT
Cyanothece sp. PCC 7425 Cyan7425_4369 -120 3.1 TCTAACGTATTCTCCA
Nostoc sp. PCC 7120 alr1911 -281 3.2 TGAATTTGATGTAACC
Position: -76
Score: 4.6
Sequence: GGTAACAGATGTTACA
Locus tag: CwatDRAFT_1571
CwatDRAFT_1571 -76 4.6 GGTAACAGATGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrrA
Ortholog function: Transcriptional regulator, OmpR family
Synechococcus sp. PCC 7002 SYNPCC7002_A0496 -75 4.1 CGTAACCACGGTTACA
Synechocystis sp. PCC 6803 sll1330 -75 4.6 GGTAACTGTTGTTACA
Cyanothece sp. ATCC 51142 cce_1808 -76 4.3 CGTAGCCGATGTTACA
Cyanothece sp. PCC 8801 PCC8801_3375 -76 4.5 CGTAGCAGATGTTACA
Cyanothece sp. PCC 7425 Cyan7425_0851 -82 4.1 AGTAGCTAGAGTTACG
Nostoc sp. PCC 7120 all4312 -75 4.5 AGTAACAAAGACTACA
Trichodesmium erythraeum IMS101 Tery_0675 -89 4.7 AGTAGCTTCTGTTACA
Thermosynechococcus elongatus BP-1 tlr1330 -138 4 AGTATTATTCGTTACG
Position: -93
Score: 4.6
Sequence: TGTATTCGTTGTTACA
Locus tag: CwatDRAFT_1143
CwatDRAFT_1143 -93 4.6 TGTATTCGTTGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0076
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A0076 -97 4.2 AGTATTGAAATATACA
Synechocystis sp. PCC 6803 ssr1562 -78 4.5 TGTAATCGATAATACA
Cyanothece sp. ATCC 51142 cce_0537 -137 4 TGTAAACTATGATATA
-93 4.8 TGTAGTCTTTGTTACA
Cyanothece sp. PCC 8801 PCC8801_3101 -95 4.6 TGTATTGGTTGTTACA
Microcystis aeruginosa NIES-843 MAE_39690 -99 4.3 TGTAATCGTCGATACA
Position: -17
Score: 3.7
Sequence: ATTATCGAATAATACA
Locus tag: CwatDRAFT_1237
CwatDRAFT_1237 -17 3.7 ATTATCGAATAATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndhF
Ortholog function: NAD(P)H dehydrogenase subunit (EC 1.6.99.5)
Synechocystis sp. PCC 6803 sll1732 -244 4 TGTAACAAATAACACT
Cyanothece sp. PCC 8801 PCC8801_4247 -238 3.6 CGTATTATGAGTTAGA
Nostoc sp. PCC 7120 alr4156 -260 4 TGTCTTATAAAATACA
Thermosynechococcus elongatus BP-1 null -220 3.6 GGTAACTTTTGCTATG
Position: 11
Score: 3.7
Sequence: TGTACCACAAGATAAA
Locus tag: CwatDRAFT_0834
CwatDRAFT_0834 11 3.7 TGTACCACAAGATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntcA
Ortholog function: Global nitrogen transcription regulator, Crp family
Synechococcus sp. PCC 7002 SYNPCC7002_A1675 -177 3.9 TGAAGCAAAAAGTACA
Cyanothece sp. PCC 7425 Cyan7425_0755 -173 4.8 TGTATCCGATGATACA
Nostoc sp. PCC 7120 alr4392 -151 3.7 GGTATCATTATGAACA
-111 3.7 AGTATAGGAAAGTACA
Synechococcus elongatus PCC 7942 Synpcc7942_0127 -157 4.7 AGTAGCAGTTGCTACA
Synechococcus sp. JA-3-3Ab CYA_1799 -181 4.7 TGTAGCTCCTGCTACA
Gloeobacter violaceus PCC 7421 gvip454 -77 3.9 AGTAGTCCCTAATACA
Position: -170
Score: 4.5
Sequence: TGTTACAATGGCTACA
Locus tag: CwatDRAFT_0941
CwatDRAFT_0941 -170 4.5 TGTTACAATGGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0077
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A0077 -97 4.2 AGTATTGAAATATACA
Cyanothece sp. ATCC 51142 cce_4355 -172 4.7 TGTTACAATAGCTACA
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