Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of CcmR regulog to Crocosphaera watsonii WH 8501

Reference regulog properties
Source regulog: CcmR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: repressor
Biological process: Carbon dioxide fixation
Effector:
Phylum: Cyanobacteria
Propagated regulon:
Target genome Crocosphaera watsonii WH 8501
Orthologous TF(s) CwatDRAFT_5667
Regulated genes 6
Built upon 72 sites [see more]
Predicted regulatory interactions in Crocosphaera watsonii WH 8501
Locus tag Position Score Sequence
Position: -79
Score: 5.1
Sequence: ATCGAATTTAGTCTAT
Locus tag: CwatDRAFT_5667
CwatDRAFT_5667 -79 5.1 ATCGAATTTAGTCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmR
Ortholog function: Carbon assimilation transcriptional regulator, LysR family
Cyanothece sp. ATCC 51142 cce_3731 -133 4.3 ATAGATTTATTTCAAC
-101 4.8 ATGGAAATAAGTCTAT
Cyanothece sp. PCC 8801 PCC8801_3406 -144 4.4 ATAGAATTTAATCAAA
-112 4.8 ATTGTATTTAATCTAT
Microcystis aeruginosa NIES-843 MAE_62070 -238 4.3 ATAGACAAAACTTTAT
-207 4.9 ATTGTTATAAATCTAT
-122 4.9 ATTGATTTAAACCTAT
Microcystis aeruginosa NIES-843 MAE_15110 -71 4.9 ATTGACTAGAATCTAT
Synechocystis sp. PCC 6803 sll1594 -240 4.7 ATTGGCTTTATTCTAT
-179 4.8 ATAGCCATAGGTCTAT
Position: -74
Score: 5
Sequence: ATAGACTTTTGACTAA
Locus tag: CwatDRAFT_3766
CwatDRAFT_3766 -74 5 ATAGACTTTTGACTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpX
Ortholog function: Fructose-1,6-bisphosphatase II
Cyanothece sp. ATCC 51142 cce_3974 -74 5 ATAGACTTTTGACTAA
Cyanothece sp. PCC 8801 PCC8801_3646 -74 5 ATAGACTTTTGACTAA
Microcystis aeruginosa NIES-843 MAE_30020 -71 4.9 ATAGACTTTTGACTGT
Synechocystis sp. PCC 6803 slr2094 -71 5.6 ATAGACTTTTGACTAT
Position: -92
Score: 4
Sequence: ATTGTTTATTCTCAAT
Locus tag: CwatDRAFT_2080
CwatDRAFT_2080 -92 4 ATTGTTTATTCTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cupA
Ortholog function: CO2 uptake protein
Cyanothece sp. ATCC 51142 cce_0605 -74 5.5 ATAGACTTAATTCTAT
Cyanothece sp. PCC 8801 PCC8801_4250 -71 5.6 ATAGACTAAAGTCTAT
-8 5 ATTGTTATATGTCTAT
Gloeobacter violaceus PCC 7421 gvip134 -139 5 ATCTACTTTTATCTAT
Synechococcus sp. JA-3-3Ab CYA_0638 -107 5 CTTGATTTTTGTCTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A0174 -63 5 ATTGACTCTAGTCTAT
Synechocystis sp. PCC 6803 sll1734 -204 3.9 ATTGTCGCTTGACTAT
Position: -212
Score: 4
Sequence: ATAGATTATAAACTCA
Position: -74
Score: 5.5
Sequence: ATAGACTTAATTCTAT
Locus tag: CwatDRAFT_1237
CwatDRAFT_1237 -212 4 ATAGATTATAAACTCA
-74 5.5 ATAGACTTAATTCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndhF3
Ortholog function: NADH dehydrogenase subunit F
Cyanothece sp. ATCC 51142 cce_0603 -74 5.5 ATAGACTTAATTCTAT
Cyanothece sp. PCC 8801 PCC8801_4247 -71 5.6 ATAGACTAAAGTCTAT
-8 5 ATTGTTATATGTCTAT
Gloeobacter violaceus PCC 7421 gvip132 -139 5 ATCTACTTTTATCTAT
Microcystis aeruginosa NIES-843 MAE_15120 -71 4.9 ATTGACTAGAATCTAT
Nostoc sp. PCC 7120 alr4156 -245 5.9 ATAGATTTTTGTCTAT
Synechococcus sp. JA-3-3Ab CYA_0640 -107 5 CTTGATTTTTGTCTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A0172 -63 5 ATTGACTCTAGTCTAT
Synechocystis sp. PCC 6803 sll1732 -204 3.9 ATTGTCGCTTGACTAT
Position: -317
Score: 4.6
Sequence: ATAGATAAAAGTATAT
Locus tag: CwatDRAFT_0889
CwatDRAFT_0889 -317 4.6 ATAGATAAAAGTATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sbtA
Ortholog function: High-affinity, low-flux sodium dependent bicarbonate transporter
Cyanothece sp. ATCC 51142 cce_2939 -181 4 ATAGATCGATATATAT
Cyanothece sp. PCC 7425 Cyan7425_5063 -94 4.2 TTTTACCTATGTCTAT
Cyanothece sp. PCC 8801 PCC8801_1249 -174 5.4 ATAGATAAATGTCTAT
Microcystis aeruginosa NIES-843 MAE_62090 -196 4.7 ATAGGTTTAAATCAAT
-111 4.9 ATAGATTTATAACAAT
-80 5 ATAAAGTTTTGTCTAT
Nostoc sp. PCC 7120 all2134 -191 4.6 ATAGAATTTTGGCTCT
-173 4.8 ATAAATATTGATCTAT
Synechococcus elongatus PCC 7942 Synpcc7942_1475 -207 4.6 ATAGACAGGAATCTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A0470 -134 4.9 ATAGAGCTAAATCTAT
Synechocystis sp. PCC 6803 slr1512 -182 4.7 ATAGACTTTAGCTTAT
-136 5 ATAGACAAGAGTCTAT
Position: -319
Score: 4.4
Sequence: ATGTGTTTAAGTCTAT
Locus tag: CwatDRAFT_0883
CwatDRAFT_0883 -319 4.4 ATGTGTTTAAGTCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sbtB
Ortholog function: Predicted membrane protein
Cyanothece sp. ATCC 51142 cce_2937 -52 4.5 ATAGATTTTTGTCTTA
Cyanothece sp. PCC 7425 Cyan7425_5062 -94 4.2 TTTTACCTATGTCTAT
Cyanothece sp. PCC 8801 PCC8801_1248 -174 5.4 ATAGATAAATGTCTAT
Microcystis aeruginosa NIES-843 MAE_62100 -196 4.7 ATAGGTTTAAATCAAT
-111 4.9 ATAGATTTATAACAAT
-80 5 ATAAAGTTTTGTCTAT
Nostoc sp. PCC 7120 all2133 -191 4.6 ATAGAATTTTGGCTCT
-173 4.8 ATAAATATTGATCTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A0472 -131 4.6 ATAGACTTAAAGATAT
-99 4.2 ATAGAGTCTTGTCTTT
Synechocystis sp. PCC 6803 slr1513 -182 4.7 ATAGACTTTAGCTTAT
-136 5 ATAGACAAGAGTCTAT
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