Propagation of PedR regulog to Nostoc sp. PCC 7120
| Source regulog: | PedR - Cyanobacteria |
| Regulator type: | Transcription factor |
| Regulator family: | LuxR |
| Regulation mode: | repressor (activator) |
| Biological process: | Photosynthesis; Carbon fixation |
| Effector: | Trx, thioredoxin protein |
| Phylum: | Cyanobacteria |
| Propagated regulon: | |
| Target genome | Nostoc sp. PCC 7120 |
| Orthologous TF(s) | asl2551 |
| Regulated genes | 8 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -160
Score: 4.2 Sequence: GAGTATTTATTCCT
Position: -59
Score: 4.3 Sequence: AAGTAACAATTCCT
Locus tag: alr0348
|
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| alr0348 | -160 | 4.2 | GAGTATTTATTCCT | |
| -59 | 4.3 | AAGTAACAATTCCT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ndhD | ||||
| Ortholog function: NADH dehydrogenase subunit | ||||
| Nostoc sp. PCC 7120 | alr0348 | -160 | 4.2 | GAGTATTTATTCCT |
| -119 | 4.1 | GAGTATAAATTCCT | ||
| -59 | 4.3 | AAGTAACAATTCCT | ||
|
Position: -263
Score: 4.2 Sequence: AAGCATCAATACCG
Locus tag: alr0782
|
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| alr0782 | -263 | 4.2 | AAGCATCAATACCG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rpe | ||||
| Ortholog function: Ribulose-phosphate 3-epimerase | ||||
| Cyanothece sp. PCC 7425 | Cyan7425_1996 | -14 | 3.9 | GAGGAACTTTACCT |
| Cyanothece sp. PCC 8801 | PCC8801_1619 | -275 | 3.6 | AAGCAGCTATTCTG |
| Nostoc sp. PCC 7120 | alr0782 | -263 | 4.2 | AAGCATCAATACCG |
| Synechococcus sp. JA-3-3Ab | CYA_0084 | -109 | 3.5 | AACCATATTTTCTC |
| Synechocystis sp. PCC 6803 | sll0807 | -27 | 3.5 | GAGTTGAAATACTT |
|
Position: -194
Score: 4.5 Sequence: AAGTATATTTAATT
Position: -33
Score: 4.6 Sequence: AAGTACATATACCA
Locus tag: asl2551
|
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| asl2551 | -194 | 4.5 | AAGTATATTTAATT | |
| -33 | 4.6 | AAGTACATATACCA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pedR | ||||
| Ortholog function: Thioredoxin status sensitive transcription regulator, LuxR family | ||||
| Cyanothece sp. ATCC 51142 | cce_4720 | -29 | 4.7 | AAGTAAATGTACTA |
| Cyanothece sp. PCC 7425 | Cyan7425_0293 | -28 | 4.3 | AAGTAATTGTACGG |
| Cyanothece sp. PCC 8801 | PCC8801_4139 | -28 | 4.7 | AAGTAAATGTACTA |
| Microcystis aeruginosa NIES-843 | MAE_54580 | -28 | 4.7 | AAGTAAATATACGA |
| Nostoc sp. PCC 7120 | asl2551 | -194 | 4.5 | AAGTATATTTAATT |
| -33 | 4.6 | AAGTACATATACCA | ||
| Prochlorococcus marinus str. MIT 9313 | PMT2014 | -366 | 3.7 | AAGTAAATCTGATT |
| Synechococcus elongatus PCC 7942 | Synpcc7942_2264 | -30 | 4.7 | AAGTACAAATACTT |
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0641 | -257 | 3.7 | AAGAAAGTTTATCT |
| Synechocystis sp. PCC 6803 | ssl0564 | -28 | 4.8 | GAGTAAATATACCT |
| Thermosynechococcus elongatus BP-1 | null | -22 | 4.6 | AAGTAATTATACGG |
| Trichodesmium erythraeum IMS101 | Tery_2735 | -34 | 5.2 | AAGCAAATATACTT |
|
Position: -157
Score: 4.3 Sequence: AAGCATGAATACTA
Locus tag: all2740
|
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| all2740 | -157 | 4.3 | AAGCATGAATACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: slr1957 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Cyanothece sp. ATCC 51142 | cce_2950 | -166 | 4.5 | AAGCATATCTACTT |
| Cyanothece sp. PCC 7425 | Cyan7425_3849 | -86 | 5.1 | AAGTATTTATACCT |
| Cyanothece sp. PCC 8801 | PCC8801_3714 | -148 | 4.5 | AAGCAAGATTACCT |
| Nostoc sp. PCC 7120 | all2740 | -157 | 4.3 | AAGCATGAATACTA |
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1219 | -217 | 5 | AAGTAATTATACCC |
| Synechocystis sp. PCC 6803 | slr1957 | -18 | 4.8 | AAGCATAAATACCT |
|
Position: -56
Score: 3.7 Sequence: AAGCACTTATAGTC
Locus tag: alr3441
|
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| alr3441 | -56 | 3.7 | AAGCACTTATAGTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: chlB | ||||
| Ortholog function: Light-independent protochlorophyllide reductase subunit B | ||||
| Microcystis aeruginosa NIES-843 | MAE_53860 | -319 | 4.5 | AAGCAAAATTACCG |
| Nostoc sp. PCC 7120 | alr3441 | -56 | 3.7 | AAGCACTTATAGTC |
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1652 | -14 | 4.6 | GAGTAAAAATACCT |
| Synechocystis sp. PCC 6803 | slr0772 | -182 | 3.4 | AAGCATTAAGAATT |
| Trichodesmium erythraeum IMS101 | Tery_3812 | -177 | 4.1 | AGTTAAAAATACTT |
|
Position: -23
Score: 4.5 Sequence: AAGTATTTTTGCTT
Locus tag: alr5050
|
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| alr5050 | -23 | 4.5 | AAGTATTTTTGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ndhD2 | ||||
| Ortholog function: NADH dehydrogenase subunit | ||||
| Cyanothece sp. PCC 7425 | Cyan7425_0836 | -110 | 4.2 | AAGTAGGTTTACCC |
| -8 | 4.4 | AAGTATTTATGCTC | ||
| Microcystis aeruginosa NIES-843 | MAE_42210 | -20 | 4.2 | AGGTATTTTTTCTT |
| Nostoc sp. PCC 7120 | alr5050 | -23 | 4.5 | AAGTATTTTTGCTT |
| Synechocystis sp. PCC 6803 | slr1291 | -20 | 4.3 | AGGTATTTATTCTT |
| Trichodesmium erythraeum IMS101 | Tery_3241 | -103 | 4.7 | AAGTATATATATTT |
| -20 | 4.1 | AAGTATTTGTGCTC | ||
|
Position: -7
Score: 3.7 Sequence: AAGCAAAATGACCA
Locus tag: all5076
|
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| all5076 | -7 | 3.7 | AAGCAAAATGACCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: chlN | ||||
| Ortholog function: Light-independent protochlorophyllide reductase subunit N | ||||
| Cyanothece sp. ATCC 51142 | cce_4534 | -365 | 4.9 | AAGTAAGTTTACCT |
| Cyanothece sp. PCC 8801 | PCC8801_0789 | -357 | 4.7 | AAGCAACTTTACCT |
| Nostoc sp. PCC 7120 | all5076 | -7 | 3.7 | AAGCAAAATGACCA |
| Synechocystis sp. PCC 6803 | slr0750 | -242 | 3.5 | AATTAAAATTAATC |
|
Position: -268
Score: 3.5 Sequence: TACTATTTTTACTT
Locus tag: all5078
|
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| all5078 | -268 | 3.5 | TACTATTTTTACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: chlL | ||||
| Ortholog function: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | ||||
| Cyanothece sp. ATCC 51142 | cce_4532 | -155 | 4.3 | AAGCAATTTTTCTC |
| Cyanothece sp. PCC 8801 | PCC8801_0791 | -42 | 4.2 | AGGCAAATACACTT |
| Microcystis aeruginosa NIES-843 | MAE_16230 | -223 | 3.6 | AAGTAAATGTATAA |
| Synechocystis sp. PCC 6803 | slr0749 | -196 | 4.8 | AAGTAACTATACCC |
| -178 | 4 | AAGTTATTTTATTT | ||