Propagation of PedR regulog to Cyanothece sp. PCC 7425
| Source regulog: | PedR - Cyanobacteria |
| Regulator type: | Transcription factor |
| Regulator family: | LuxR |
| Regulation mode: | repressor (activator) |
| Biological process: | Photosynthesis; Carbon fixation |
| Effector: | Trx, thioredoxin protein |
| Phylum: | Cyanobacteria |
| Propagated regulon: | |
| Target genome | Cyanothece sp. PCC 7425 |
| Orthologous TF(s) | Cyan7425_0293 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -28
Score: 4.3 Sequence: AAGTAATTGTACGG
Locus tag: Cyan7425_0293
|
||||
| Cyan7425_0293 | -28 | 4.3 | AAGTAATTGTACGG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pedR | ||||
| Ortholog function: Thioredoxin status sensitive transcription regulator, LuxR family | ||||
| Cyanothece sp. ATCC 51142 | cce_4720 | -29 | 4.7 | AAGTAAATGTACTA |
| Cyanothece sp. PCC 7425 | Cyan7425_0293 | -28 | 4.3 | AAGTAATTGTACGG |
| Cyanothece sp. PCC 8801 | PCC8801_4139 | -28 | 4.7 | AAGTAAATGTACTA |
| Microcystis aeruginosa NIES-843 | MAE_54580 | -28 | 4.7 | AAGTAAATATACGA |
| Nostoc sp. PCC 7120 | asl2551 | -194 | 4.5 | AAGTATATTTAATT |
| -33 | 4.6 | AAGTACATATACCA | ||
| Prochlorococcus marinus str. MIT 9313 | PMT2014 | -366 | 3.7 | AAGTAAATCTGATT |
| Synechococcus elongatus PCC 7942 | Synpcc7942_2264 | -30 | 4.7 | AAGTACAAATACTT |
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0641 | -257 | 3.7 | AAGAAAGTTTATCT |
| Synechocystis sp. PCC 6803 | ssl0564 | -28 | 4.8 | GAGTAAATATACCT |
| Thermosynechococcus elongatus BP-1 | null | -22 | 4.6 | AAGTAATTATACGG |
| Trichodesmium erythraeum IMS101 | Tery_2735 | -34 | 5.2 | AAGCAAATATACTT |
|
Position: -110
Score: 4.2 Sequence: AAGTAGGTTTACCC
Position: -8
Score: 4.4 Sequence: AAGTATTTATGCTC
Locus tag: Cyan7425_0836
|
||||
| Cyan7425_0836 | -110 | 4.2 | AAGTAGGTTTACCC | |
| -8 | 4.4 | AAGTATTTATGCTC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ndhD2 | ||||
| Ortholog function: NADH dehydrogenase subunit | ||||
| Cyanothece sp. PCC 7425 | Cyan7425_0836 | -110 | 4.2 | AAGTAGGTTTACCC |
| -8 | 4.4 | AAGTATTTATGCTC | ||
| Microcystis aeruginosa NIES-843 | MAE_42210 | -20 | 4.2 | AGGTATTTTTTCTT |
| Nostoc sp. PCC 7120 | alr5050 | -23 | 4.5 | AAGTATTTTTGCTT |
| Synechocystis sp. PCC 6803 | slr1291 | -20 | 4.3 | AGGTATTTATTCTT |
| Trichodesmium erythraeum IMS101 | Tery_3241 | -103 | 4.7 | AAGTATATATATTT |
| -20 | 4.1 | AAGTATTTGTGCTC | ||
|
Position: -14
Score: 3.9 Sequence: GAGGAACTTTACCT
Locus tag: Cyan7425_1996
|
||||
| Cyan7425_1996 | -14 | 3.9 | GAGGAACTTTACCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rpe | ||||
| Ortholog function: Ribulose-phosphate 3-epimerase | ||||
| Cyanothece sp. PCC 7425 | Cyan7425_1996 | -14 | 3.9 | GAGGAACTTTACCT |
| Cyanothece sp. PCC 8801 | PCC8801_1619 | -275 | 3.6 | AAGCAGCTATTCTG |
| Nostoc sp. PCC 7120 | alr0782 | -263 | 4.2 | AAGCATCAATACCG |
| Synechococcus sp. JA-3-3Ab | CYA_0084 | -109 | 3.5 | AACCATATTTTCTC |
| Synechocystis sp. PCC 6803 | sll0807 | -27 | 3.5 | GAGTTGAAATACTT |
|
Position: -86
Score: 5.1 Sequence: AAGTATTTATACCT
Locus tag: Cyan7425_3849
|
||||
| Cyan7425_3849 | -86 | 5.1 | AAGTATTTATACCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: slr1957 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Cyanothece sp. ATCC 51142 | cce_2950 | -166 | 4.5 | AAGCATATCTACTT |
| Cyanothece sp. PCC 7425 | Cyan7425_3849 | -86 | 5.1 | AAGTATTTATACCT |
| Cyanothece sp. PCC 8801 | PCC8801_3714 | -148 | 4.5 | AAGCAAGATTACCT |
| Nostoc sp. PCC 7120 | all2740 | -157 | 4.3 | AAGCATGAATACTA |
| Synechococcus sp. PCC 7002 | SYNPCC7002_A1219 | -217 | 5 | AAGTAATTATACCC |
| Synechocystis sp. PCC 6803 | slr1957 | -18 | 4.8 | AAGCATAAATACCT |