Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of CcmR regulog to Cyanothece sp. PCC 7425

Reference regulog properties
Source regulog: CcmR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: repressor
Biological process: Carbon dioxide fixation
Effector:
Phylum: Cyanobacteria
Propagated regulon:
Target genome Cyanothece sp. PCC 7425
Orthologous TF(s) Cyan7425_3855
Regulated genes 5
Built upon 72 sites [see more]
Predicted regulatory interactions in Cyanothece sp. PCC 7425
Locus tag Position Score Sequence
Position: -153
Score: 3.8
Sequence: ATAGTTAATTTGTTAT
Position: -121
Score: 4.7
Sequence: ATTTATAAATATCTAT
Locus tag: Cyan7425_3542
Cyan7425_3542 -153 3.8 ATAGTTAATTTGTTAT
-121 4.7 ATTTATAAATATCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mnhC
Ortholog function: Na/H antiporter, subunit C
Cyanothece sp. ATCC 51142 cce_1686 -232 4.5 ATAGTAATTAGCCTAT
-200 5 ATAGAATCTAGTCTAT
Cyanothece sp. PCC 7425 Cyan7425_3542 -121 4.7 ATTTATAAATATCTAT
Cyanothece sp. PCC 8801 PCC8801_2762 -56 4.8 ATAGGCTTTAAGCTAT
-24 4.7 ATAGTTTTTTGTATAT
Synechococcus sp. PCC 7002 SYNPCC7002_A2373 -123 5.2 ATAGATATTAAACTAT
Synechocystis sp. PCC 6803 slr2006 -125 3.8 ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803 slr2008 -125 3.8 ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803 slr2008 -107 4.3 ATTGTGATTGGTCTAT
Thermosynechococcus elongatus BP-1 tll1818 -219 5 ATTGATAAAAATCTAT
-193 4.4 ATTGACATTGATCTAA
Position: -93
Score: 5.9
Sequence: ATAGATTTTTGTCTAT
Locus tag: Cyan7425_3855
Cyan7425_3855 -93 5.9 ATAGATTTTTGTCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmR
Ortholog function: Carbon assimilation transcriptional regulator, LysR family
Cyanothece sp. PCC 7425 Cyan7425_3855 -93 5.9 ATAGATTTTTGTCTAT
Gloeobacter violaceus PCC 7421 gll1001 -34 5.2 ATAGAACTATGTCTAT
Nostoc sp. PCC 7120 all0862 -285 5.8 ATAGATTTTTATCTAT
-146 5.8 ATAGATTTTTATCTAT
-72 4.9 CTAGTCTTATATCTAT
Synechococcus elongatus PCC 7942 Synpcc7942_1310 -34 5.7 ATAGACTTAAATCTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A0171 -63 5 ATTGACTCTAGTCTAT
Thermosynechococcus elongatus BP-1 tlr2037 -42 5.1 ATAGAATTTCGTCTAT
Position: -343
Score: 4.2
Sequence: ATAAGTTTTTATTTAT
Position: -286
Score: 5.2
Sequence: ATAGACTTAGGGCTAT
Locus tag: Cyan7425_4925
Cyan7425_4925 -343 4.2 ATAAGTTTTTATTTAT
-286 5.2 ATAGACTTAGGGCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cmpA
Ortholog function: Bicarbontate ABC transporter, substrate-binding protein
Cyanothece sp. ATCC 51142 cce_0305 -299 4.9 ATAGATAAATACCTAT
Cyanothece sp. PCC 7425 Cyan7425_4925 -286 5.2 ATAGACTTAGGGCTAT
Cyanothece sp. PCC 8801 PCC8801_3521 -268 4.5 ATACATATTAAGCTAT
Microcystis aeruginosa NIES-843 MAE_19990 -104 4.6 ATAGCTAAATTTCTAT
Synechococcus elongatus PCC 7942 Synpcc7942_1488 -186 4.9 ATTGACTTAGCTCTAT
Synechococcus sp. JA-3-3Ab CYA_0894 -185 4.2 ATAAACGGAAGTCTAT
-153 4.4 ATTGTATTGTTTCTAT
Synechocystis sp. PCC 6803 slr0040 -208 4.5 TTGGATATTTATCTAT
Thermosynechococcus elongatus BP-1 null -124 4.1 ATAGATTGTTTGCAAT
Position: -94
Score: 4.2
Sequence: TTTTACCTATGTCTAT
Locus tag: Cyan7425_5063
Cyan7425_5063 -94 4.2 TTTTACCTATGTCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sbtA
Ortholog function: High-affinity, low-flux sodium dependent bicarbonate transporter
Cyanothece sp. ATCC 51142 cce_2939 -181 4 ATAGATCGATATATAT
Cyanothece sp. PCC 7425 Cyan7425_5063 -94 4.2 TTTTACCTATGTCTAT
Cyanothece sp. PCC 8801 PCC8801_1249 -174 5.4 ATAGATAAATGTCTAT
Microcystis aeruginosa NIES-843 MAE_62090 -196 4.7 ATAGGTTTAAATCAAT
-111 4.9 ATAGATTTATAACAAT
-80 5 ATAAAGTTTTGTCTAT
Nostoc sp. PCC 7120 all2134 -191 4.6 ATAGAATTTTGGCTCT
-173 4.8 ATAAATATTGATCTAT
Synechococcus elongatus PCC 7942 Synpcc7942_1475 -207 4.6 ATAGACAGGAATCTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A0470 -134 4.9 ATAGAGCTAAATCTAT
Synechocystis sp. PCC 6803 slr1512 -182 4.7 ATAGACTTTAGCTTAT
-136 5 ATAGACAAGAGTCTAT
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