Propagation of PedR regulog to Synechocystis sp. PCC 6803

Reference regulog properties
Source regulog:	PedR - Cyanobacteria
Regulator type:	Transcription factor
Regulator family:	LuxR
Regulation mode:	repressor (activator)
Biological process:	Photosynthesis; Carbon fixation
Effector:	Trx, thioredoxin protein
Phylum:	Cyanobacteria
Propagated regulon:
Target genome	Synechocystis sp. PCC 6803
Orthologous TF(s)	ssl0564
Regulated genes	7

Built upon 56 sites [see more]

Predicted regulatory interactions in *Synechocystis sp. PCC 6803*
	Locus tag	Position	Score	Sequence
Position: -20 Score: 4.3 Sequence: AGGTATTTATTCTT Locus tag: slr1291
	slr1291	-20	4.3	AGGTATTTATTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndhD2
Ortholog function: NADH dehydrogenase subunit
Cyanothece sp. PCC 7425	Cyan7425_0836	-110	4.2	AAGTAGGTTTACCC
		-8	4.4	AAGTATTTATGCTC
Microcystis aeruginosa NIES-843	MAE_42210	-20	4.2	AGGTATTTTTTCTT
Nostoc sp. PCC 7120	alr5050	-23	4.5	AAGTATTTTTGCTT
Synechocystis sp. PCC 6803	slr1291	-20	4.3	AGGTATTTATTCTT
Trichodesmium erythraeum IMS101	Tery_3241	-103	4.7	AAGTATATATATTT
		-20	4.1	AAGTATTTGTGCTC

Position: -27 Score: 3.5 Sequence: GAGTTGAAATACTT Locus tag: sll0807
	sll0807	-27	3.5	GAGTTGAAATACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpe
Ortholog function: Ribulose-phosphate 3-epimerase
Cyanothece sp. PCC 7425	Cyan7425_1996	-14	3.9	GAGGAACTTTACCT
Cyanothece sp. PCC 8801	PCC8801_1619	-275	3.6	AAGCAGCTATTCTG
Nostoc sp. PCC 7120	alr0782	-263	4.2	AAGCATCAATACCG
Synechococcus sp. JA-3-3Ab	CYA_0084	-109	3.5	AACCATATTTTCTC
Synechocystis sp. PCC 6803	sll0807	-27	3.5	GAGTTGAAATACTT

Position: -18 Score: 4.8 Sequence: AAGCATAAATACCT Locus tag: slr1957
	slr1957	-18	4.8	AAGCATAAATACCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: slr1957
Ortholog function: Conserved hypothetical protein
Cyanothece sp. ATCC 51142	cce_2950	-166	4.5	AAGCATATCTACTT
Cyanothece sp. PCC 7425	Cyan7425_3849	-86	5.1	AAGTATTTATACCT
Cyanothece sp. PCC 8801	PCC8801_3714	-148	4.5	AAGCAAGATTACCT
Nostoc sp. PCC 7120	all2740	-157	4.3	AAGCATGAATACTA
Synechococcus sp. PCC 7002	SYNPCC7002_A1219	-217	5	AAGTAATTATACCC
Synechocystis sp. PCC 6803	slr1957	-18	4.8	AAGCATAAATACCT

Position: -28 Score: 4.8 Sequence: GAGTAAATATACCT Locus tag: ssl0564
	ssl0564	-28	4.8	GAGTAAATATACCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pedR
Ortholog function: Thioredoxin status sensitive transcription regulator, LuxR family
Cyanothece sp. ATCC 51142	cce_4720	-29	4.7	AAGTAAATGTACTA
Cyanothece sp. PCC 7425	Cyan7425_0293	-28	4.3	AAGTAATTGTACGG
Cyanothece sp. PCC 8801	PCC8801_4139	-28	4.7	AAGTAAATGTACTA
Microcystis aeruginosa NIES-843	MAE_54580	-28	4.7	AAGTAAATATACGA
Nostoc sp. PCC 7120	asl2551	-194	4.5	AAGTATATTTAATT
		-33	4.6	AAGTACATATACCA
Prochlorococcus marinus str. MIT 9313	PMT2014	-366	3.7	AAGTAAATCTGATT
Synechococcus elongatus PCC 7942	Synpcc7942_2264	-30	4.7	AAGTACAAATACTT
Synechococcus sp. PCC 7002	SYNPCC7002_A0641	-257	3.7	AAGAAAGTTTATCT
Synechocystis sp. PCC 6803	ssl0564	-28	4.8	GAGTAAATATACCT
Thermosynechococcus elongatus BP-1	null	-22	4.6	AAGTAATTATACGG
Trichodesmium erythraeum IMS101	Tery_2735	-34	5.2	AAGCAAATATACTT

Position: -211 Score: 3.4 Sequence: AGTGATAAATACCT Position: -182 Score: 3.4 Sequence: AAGCATTAAGAATT Position: -79 Score: 3.4 Sequence: ATGTAAAGTTACTG Locus tag: slr0772
	slr0772	-211	3.4	AGTGATAAATACCT
		-182	3.4	AAGCATTAAGAATT
		-79	3.4	ATGTAAAGTTACTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlB
Ortholog function: Light-independent protochlorophyllide reductase subunit B
Microcystis aeruginosa NIES-843	MAE_53860	-319	4.5	AAGCAAAATTACCG
Nostoc sp. PCC 7120	alr3441	-56	3.7	AAGCACTTATAGTC
Synechococcus sp. PCC 7002	SYNPCC7002_A1652	-14	4.6	GAGTAAAAATACCT
Synechocystis sp. PCC 6803	slr0772	-182	3.4	AAGCATTAAGAATT
Trichodesmium erythraeum IMS101	Tery_3812	-177	4.1	AGTTAAAAATACTT

Position: -196 Score: 4.8 Sequence: AAGTAACTATACCC Position: -178 Score: 4 Sequence: AAGTTATTTTATTT Locus tag: slr0749
	slr0749	-196	4.8	AAGTAACTATACCC
		-178	4	AAGTTATTTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlL
Ortholog function: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
Cyanothece sp. ATCC 51142	cce_4532	-155	4.3	AAGCAATTTTTCTC
Cyanothece sp. PCC 8801	PCC8801_0791	-42	4.2	AGGCAAATACACTT
Microcystis aeruginosa NIES-843	MAE_16230	-223	3.6	AAGTAAATGTATAA
Synechocystis sp. PCC 6803	slr0749	-196	4.8	AAGTAACTATACCC
		-178	4	AAGTTATTTTATTT

Position: -242 Score: 3.5 Sequence: AATTAAAATTAATC Locus tag: slr0750
	slr0750	-242	3.5	AATTAAAATTAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlN
Ortholog function: Light-independent protochlorophyllide reductase subunit N
Cyanothece sp. ATCC 51142	cce_4534	-365	4.9	AAGTAAGTTTACCT
Cyanothece sp. PCC 8801	PCC8801_0789	-357	4.7	AAGCAACTTTACCT
Nostoc sp. PCC 7120	all5076	-7	3.7	AAGCAAAATGACCA
Synechocystis sp. PCC 6803	slr0750	-242	3.5	AATTAAAATTAATC

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of PedR regulog to Synechocystis sp. PCC 6803

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --