Propagation of NtcA regulog to Synechocystis sp. PCC 6803

Reference regulog properties
Source regulog:	NtcA - Cyanobacteria
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	activator
Biological process:	Nitrogen assimilation
Effector:	2-oxoglutarate
Phylum:	Cyanobacteria
Propagated regulon:
Target genome	Synechocystis sp. PCC 6803
Orthologous TF(s)	sll1423
Regulated genes	27

Built upon 228 sites [see more]

Predicted regulatory interactions in *Synechocystis sp. PCC 6803*
	Locus tag	Position	Score	Sequence
Position: -119 Score: 4.2 Sequence: CGTAAAAATGGATACA Locus tag: sll1515
	sll1515	-119	4.2	CGTAAAAATGGATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gifB
Ortholog function: Glutamine synthetase inactivating factor IF17
Synechocystis sp. PCC 6803	sll1515	-119	4.2	CGTAAAAATGGATACA

Position: -98 Score: 4.3 Sequence: GGTAGCGAAAAATACA Locus tag: slr1756
	slr1756	-98	4.3	GGTAGCGAAAAATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: glutamine synthetase, type I
Synechococcus sp. PCC 7002	SYNPCC7002_A1630	-125	3.5	TGTgACccAgacTACA
Synechocystis sp. PCC 6803	slr1756	-98	4.3	GGTAGCGAAAAATACA
Cyanothece sp. ATCC 51142	cce_4432	-89	4.5	AGTATCCAATTATACA
		-30	4	TGTATATATTGAAACC
Cyanothece sp. PCC 8801	PCC8801_0808	-92	4	CGTATCATGGTATACA
Cyanothece sp. PCC 7425	Cyan7425_1839	-221	4.9	TGTAACTCATGATACA
Microcystis aeruginosa NIES-843	MAE_19270	-92	4.7	TGTATCgaAaaATACA
Nostoc sp. PCC 7120	alr2328	-142	4.8	TGTAACAAAGACTACA
Trichodesmium erythraeum IMS101	Tery_3834	-250	4	CGTAACACCCGATACA
Synechococcus elongatus PCC 7942	Synpcc7942_2156	-194	4.8	TGTATCAgcTGTTACA
Prochlorococcus marinus str. MIT 9313	PMT0601	-79	4.2	GGTACCTGTTGCTACA
Synechococcus sp. JA-3-3Ab	CYA_1363	-138	4.3	CGTATCAGAAACTACA
Gloeobacter violaceus PCC 7421	gvip146	-116	4	CGTATCTCAGACTACA

Position: -89 Score: 5 Sequence: TGTATAAAATGTTACA Locus tag: ssl1911
	ssl1911	-89	5	TGTATAAAATGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gifA
Ortholog function: glutamine synthetase inactivating factor IF
Synechocystis sp. PCC 6803	ssl1911	-89	5	TGTATAAAATGTTACA
Cyanothece sp. PCC 8801	PCC8801_2371	-94	4.9	TGTATAAATTGCTACA

Position: -214 Score: 4.7 Sequence: TGTAATGATAGTTACA Locus tag: slr1147
	slr1147	-214	4.7	TGTAATGATAGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A1954
Ortholog function: putative two-component sensor histidine kinase
Synechococcus sp. PCC 7002	SYNPCC7002_A1954	-243	4.7	TGTAACAGGAGTTACA
Synechocystis sp. PCC 6803	slr1147	-214	4.7	TGTAATGATAGTTACA
Cyanothece sp. ATCC 51142	cce_3327	-210	4.7	TGTAGTCATAGTTACA
		-46	4	TTTATTTTCTGTTACA
Synechococcus sp. WH 8102	SYNW0246	-143	4.1	TGTAACTTTGGTTGCA
Thermosynechococcus elongatus BP-1	tlr0195	-111	4.2	TGTAACCTATCTTACA

Position: -244 Score: 4 Sequence: TGTAACAAATAACACT Locus tag: sll1732
	sll1732	-244	4	TGTAACAAATAACACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndhF
Ortholog function: NAD(P)H dehydrogenase subunit (EC 1.6.99.5)
Synechocystis sp. PCC 6803	sll1732	-244	4	TGTAACAAATAACACT
Cyanothece sp. PCC 8801	PCC8801_4247	-238	3.6	CGTATTATGAGTTAGA
Nostoc sp. PCC 7120	alr4156	-260	4	TGTCTTATAAAATACA
Thermosynechococcus elongatus BP-1	null	-220	3.6	GGTAACTTTTGCTATG

Position: -96 Score: 3.9 Sequence: AGTTACAAACTATACA Locus tag: sll1450
	sll1450	-96	3.9	AGTTACAAACTATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrtA
Ortholog function: Nitrate/nitrite ABC transporter, substrate-binding protein
Synechocystis sp. PCC 6803	sll1450	-96	3.9	AGTTACAAACTATACA
Cyanothece sp. PCC 8801	PCC8801_4396	-184	4.6	TGTAGCAAATAATACG
		-106	3.9	AGTATTTATAGACACA
Cyanothece sp. PCC 7425	Cyan7425_4572	-123	4.5	TGTAACTTAATATACC
Microcystis aeruginosa NIES-843	MAE_14800	-177	4.2	TGTAACAATCTATACG
Synechococcus elongatus PCC 7942	Synpcc7942_1239	-220	4.9	TGTAGCAATTGCTACT
		-149	4.3	AGTATCAATGATTACT
		-80	4.4	TGTAGTTTCTGTTACC
Synechococcus sp. JA-3-3Ab	CYA_0613	-72	3.9	TGTAACTGCCAATACC
Thermosynechococcus elongatus BP-1	tlr1350	-82	4.6	AGTAGCAAAATTTACA

Position: -72 Score: 4.1 Sequence: TGTAACAACCATTACC Locus tag: slr0851
	slr0851	-72	4.1	TGTAACAACCATTACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase, type II
Synechocystis sp. PCC 6803	slr0851	-72	4.1	TGTAACAACCATTACC
Cyanothece sp. ATCC 51142	cce_0624	-47	4.7	TGTAACTGTAGTTACT
Cyanothece sp. PCC 8801	PCC8801_3485	-117	4.6	TGTAACCATAGCTACT
		-92	3.8	CGTAATTGGTTTTACA

Position: -211 Score: 4.5 Sequence: GGTATCCTATGCTACA Locus tag: slr0447
	slr0447	-211	4.5	GGTATCCTATGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: urtA
Ortholog function: Urea ABC transporter, substrate-binding protein
Synechococcus sp. PCC 7002	SYNPCC7002_A0398	-127	4.1	TGTATCAAGTGTCACA
Synechocystis sp. PCC 6803	slr0447	-211	4.5	GGTATCCTATGCTACA
Cyanothece sp. PCC 7425	Cyan7425_2260	-148	3.7	TGTATAATAGATCACA
Microcystis aeruginosa NIES-843	MAE_06220	-170	4.7	AGTAGCAAAAATTACA
		-140	4.6	AGTAGCGAAAGTTACA
Nostoc sp. PCC 7120	all1951	-116	4.3	AGTATCAAAAATAACA
Trichodesmium erythraeum IMS101	Tery_0130	-390	3.8	AGTTACAAAAAAAACA
Synechococcus sp. JA-3-3Ab	CYA_1924	-272	3.7	GGTATCCCGCGATACA
Thermosynechococcus elongatus BP-1	tlr1120	-81	4	TGTAGCCTAGCATACA

Position: -103 Score: 3.7 Sequence: GGTACTGATTTTTACA Locus tag: ssl0707
	ssl0707	-103	3.7	GGTACTGATTTTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnB
Ortholog function: nitrogen regulatory protein P-II
Synechocystis sp. PCC 6803	ssl0707	-184	3.7	GGTACTGATTTTTACA
Nostoc sp. PCC 7120	all2319	-214	3.8	AGTTACACAGACTACA
Synechococcus elongatus PCC 7942	Synpcc7942_0321	-103	4.8	TGTAGCAGTAACTACA
Synechococcus sp. JA-3-3Ab	CYA_1508	-74	4.5	TGTATCCGTTTTTACA
Thermosynechococcus elongatus BP-1	tll0591	-80	5.1	TGTAGCTATTGCTACA

Position: -228 Score: 4.3 Sequence: TGTAATTTAAAAAACA Locus tag: slr0009
	slr0009	-228	4.3	TGTAATTTAAAAAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbcL
Ortholog function: RuBisCO large subunit (EC 4.1.1.39)
Synechocystis sp. PCC 6803	slr0009	-228	4.3	TGTAATTTAAAAAACA
Nostoc sp. PCC 7120	alr1524	-32	3.6	AGTAAAAAGAGTGACA
Trichodesmium erythraeum IMS101	Tery_4410	-293	3.4	GATAACTATTACTACG

Position: -74 Score: 4.7 Sequence: TGTAATTTACGTTACA Locus tag: slr0898
	slr0898	-74	4.7	TGTAATTTACGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirA
Ortholog function: Nitrite reductase, ferredoxin dependent
Synechococcus sp. PCC 7002	SYNPCC7002_A1827	-111	4	CGTAGTTAACACTACA
Synechocystis sp. PCC 6803	slr0898	-74	4.7	TGTAATTTACGTTACA
Cyanothece sp. ATCC 51142	cce_1223	-76	4.7	TGTTACATTAGCTACA
Cyanothece sp. PCC 8801	PCC8801_2468	-75	4.6	TGTTACAATTAATACA
Cyanothece sp. PCC 7425	Cyan7425_4573	-123	4.5	TGTAACTTAATATACC
Microcystis aeruginosa NIES-843	MAE_18410	-190	4.1	TGTTACAGACAATACA
Trichodesmium erythraeum IMS101	Tery_1068	-276	3.8	TGTATTTTTATATAGT
		-199	4.1	TGTTATATAAGCTACG
Synechococcus elongatus PCC 7942	Synpcc7942_1240	-220	4.9	TGTAGCAATTGCTACT
		-149	4.3	AGTATCAATGATTACT
		-80	4.4	TGTAGTTTCTGTTACC
Synechococcus sp. JA-3-3Ab	CYA_0612	-72	3.9	TGTAACTGCCAATACC
Gloeobacter violaceus PCC 7421	gvip212	-146	4	TGTATCTGGGGTTACG
Thermosynechococcus elongatus BP-1	tlr1349	-82	4.6	AGTAGCAAAATTTACA

Position: -189 Score: 4 Sequence: AGTAGTAAATCATACA Position: -18 Score: 4.4 Sequence: TGTAGATTAAAGTACA Locus tag: sll0108
	sll0108	-189	4	AGTAGTAAATCATACA
		-18	4.4	TGTAGATTAAAGTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amt1
Ortholog function: ammonium transporter
Synechococcus sp. PCC 7002	SYNPCC7002_A2208	-52	3.7	GGTTACTTCTGCTACC
Synechocystis sp. PCC 6803	sll0108	-189	4	AGTAGTAAATCATACA
		-18	4.4	TGTAGATTAAAGTACA
Cyanothece sp. ATCC 51142	cce_3261	-152	3.5	TGTtAaggtTGTaACA
Cyanothece sp. PCC 8801	PCC8801_1229	-264	5	TGTATTTTTTGATACA
		-229	4.1	AGTAATAAAAAAAACA
Microcystis aeruginosa NIES-843	MAE_40010	-213	4.6	TGTATCAACGAATACA
Trichodesmium erythraeum IMS101	Tery_4477	-83	4.9	AGTAGCATTTGATACA
Synechococcus elongatus PCC 7942	Synpcc7942_0442	-151	4.1	TGTTACATCGATTACA
Prochlorococcus marinus str. MIT 9313	PMT1853	-160	3.8	TGTAACAAAATGAACT
Synechococcus sp. WH 8102	SYNW0253	-100	4.2	TGTATCAATTAACACA
Thermosynechococcus elongatus BP-1	amt1	-190	4.4	TGTATAACGTGATACA

Position: -181 Score: 3.3 Sequence: AGAATCAACAAAAACA Position: -134 Score: 3.2 Sequence: AGTGTTATTTTCAACA Locus tag: sll0741
	sll0741	-181	3.3	AGAATCAACAAAAACA
		-134	3.2	AGTGTTATTTTCAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifJ
Ortholog function: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
Synechococcus sp. PCC 7002	SYNPCC7002_A1443	-272	4.1	TTTATCATTTTCTACA
Synechocystis sp. PCC 6803	sll0741	-181	3.3	AGAATCAACAAAAACA
Cyanothece sp. ATCC 51142	cce_0953	-52	3.8	TGCAACAAAAATTACC
Cyanothece sp. PCC 8801	PCC8801_3918	-265	3.5	AGTAACCATAATTATT
Cyanothece sp. PCC 7425	Cyan7425_4369	-120	3.1	TCTAACGTATTCTCCA
Nostoc sp. PCC 7120	alr1911	-281	3.2	TGAATTTGATGTAACC

Position: -78 Score: 4.5 Sequence: TGTAATCGATAATACA Locus tag: ssr1562
	ssr1562	-78	4.5	TGTAATCGATAATACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0076
Ortholog function: hypothetical protein
Synechococcus sp. PCC 7002	SYNPCC7002_A0076	-97	4.2	AGTATTGAAATATACA
Synechocystis sp. PCC 6803	ssr1562	-78	4.5	TGTAATCGATAATACA
Cyanothece sp. ATCC 51142	cce_0537	-137	4	TGTAAACTATGATATA
		-93	4.8	TGTAGTCTTTGTTACA
Cyanothece sp. PCC 8801	PCC8801_3101	-95	4.6	TGTATTGGTTGTTACA
Microcystis aeruginosa NIES-843	MAE_39690	-99	4.3	TGTAATCGTCGATACA

Position: -75 Score: 4.6 Sequence: GGTAACTGTTGTTACA Locus tag: sll1330
	sll1330	-75	4.6	GGTAACTGTTGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrrA
Ortholog function: Transcriptional regulator, OmpR family
Synechococcus sp. PCC 7002	SYNPCC7002_A0496	-75	4.1	CGTAACCACGGTTACA
Synechocystis sp. PCC 6803	sll1330	-75	4.6	GGTAACTGTTGTTACA
Cyanothece sp. ATCC 51142	cce_1808	-76	4.3	CGTAGCCGATGTTACA
Cyanothece sp. PCC 8801	PCC8801_3375	-76	4.5	CGTAGCAGATGTTACA
Cyanothece sp. PCC 7425	Cyan7425_0851	-82	4.1	AGTAGCTAGAGTTACG
Nostoc sp. PCC 7120	all4312	-75	4.5	AGTAACAAAGACTACA
Trichodesmium erythraeum IMS101	Tery_0675	-89	4.7	AGTAGCTTCTGTTACA
Thermosynechococcus elongatus BP-1	tlr1330	-138	4	AGTATTATTCGTTACG

Position: -246 Score: 3.9 Sequence: TGTTATCGAGGCTACA Locus tag: slr0653
	slr0653	-246	3.9	TGTTATCGAGGCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpoD
Ortholog function: RNA polymerase sigma 70 factor
Synechocystis sp. PCC 6803	slr0653	-246	3.9	TGTTATCGAGGCTACA
Cyanothece sp. ATCC 51142	cce_0875	-232	4.3	AGTAATCAAGGCTACA
Cyanothece sp. PCC 8801	PCC8801_0154	-257	4.4	TGTAATCGAGGCTACA
Microcystis aeruginosa NIES-843	MAE_54470	-126	4.9	TGTAATTAAAGCTACA
Trichodesmium erythraeum IMS101	Tery_5068	-199	4	TGTAAAATTTTGTACC
		-46	3.7	TGTAAAATAATTTATT

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of NtcA regulog to Synechocystis sp. PCC 6803

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --