Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of PedR regulog to Nostoc punctiforme

Reference regulog properties
Source regulog: PedR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: repressor (activator)
Biological process: Photosynthesis; Carbon fixation
Effector: Trx, thioredoxin protein
Phylum: Cyanobacteria
Propagated regulon:
Target genome Nostoc punctiforme
Orthologous TF(s) Npun_F4241
Regulated genes 6
Built upon 56 sites [see more]
Predicted regulatory interactions in Nostoc punctiforme
Locus tag Position Score Sequence
Position: -163
Score: 4.7
Sequence: AAGTATTTATTCTT
Position: -122
Score: 4.3
Sequence: GAGTATATATTCCT
Locus tag: Npun_R0529
Npun_R0529 -163 4.7 AAGTATTTATTCTT
-122 4.3 GAGTATATATTCCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndhD
Ortholog function: NADH dehydrogenase subunit
Nostoc sp. PCC 7120 alr0348 -160 4.2 GAGTATTTATTCCT
-119 4.1 GAGTATAAATTCCT
-59 4.3 AAGTAACAATTCCT
Position: -119
Score: 3.6
Sequence: GAGTTATTATTCTC
Locus tag: Npun_F1541
Npun_F1541 -119 3.6 GAGTTATTATTCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpe
Ortholog function: Ribulose-phosphate 3-epimerase
Cyanothece sp. PCC 7425 Cyan7425_1996 -14 3.9 GAGGAACTTTACCT
Cyanothece sp. PCC 8801 PCC8801_1619 -275 3.6 AAGCAGCTATTCTG
Nostoc sp. PCC 7120 alr0782 -263 4.2 AAGCATCAATACCG
Synechococcus sp. JA-3-3Ab CYA_0084 -109 3.5 AACCATATTTTCTC
Synechocystis sp. PCC 6803 sll0807 -27 3.5 GAGTTGAAATACTT
Position: -205
Score: 4.1
Sequence: AAATATTTATACTA
Position: -33
Score: 4.5
Sequence: AAGTAGATATACCA
Locus tag: Npun_F4241
Npun_F4241 -205 4.1 AAATATTTATACTA
-33 4.5 AAGTAGATATACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pedR
Ortholog function: Thioredoxin status sensitive transcription regulator, LuxR family
Cyanothece sp. ATCC 51142 cce_4720 -29 4.7 AAGTAAATGTACTA
Cyanothece sp. PCC 7425 Cyan7425_0293 -28 4.3 AAGTAATTGTACGG
Cyanothece sp. PCC 8801 PCC8801_4139 -28 4.7 AAGTAAATGTACTA
Microcystis aeruginosa NIES-843 MAE_54580 -28 4.7 AAGTAAATATACGA
Nostoc sp. PCC 7120 asl2551 -194 4.5 AAGTATATTTAATT
-33 4.6 AAGTACATATACCA
Prochlorococcus marinus str. MIT 9313 PMT2014 -366 3.7 AAGTAAATCTGATT
Synechococcus elongatus PCC 7942 Synpcc7942_2264 -30 4.7 AAGTACAAATACTT
Synechococcus sp. PCC 7002 SYNPCC7002_A0641 -257 3.7 AAGAAAGTTTATCT
Synechocystis sp. PCC 6803 ssl0564 -28 4.8 GAGTAAATATACCT
Thermosynechococcus elongatus BP-1 null -22 4.6 AAGTAATTATACGG
Trichodesmium erythraeum IMS101 Tery_2735 -34 5.2 AAGCAAATATACTT
Position: -259
Score: 3.4
Sequence: AAACAAATTTGCCG
Position: -222
Score: 3.4
Sequence: AAGCAACAGTAATA
Position: -64
Score: 3.7
Sequence: AAGCACTTATAGTC
Locus tag: Npun_R4932
Npun_R4932 -259 3.4 AAACAAATTTGCCG
-222 3.4 AAGCAACAGTAATA
-64 3.7 AAGCACTTATAGTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: chlB
Ortholog function: Light-independent protochlorophyllide reductase subunit B
Microcystis aeruginosa NIES-843 MAE_53860 -319 4.5 AAGCAAAATTACCG
Nostoc sp. PCC 7120 alr3441 -56 3.7 AAGCACTTATAGTC
Synechococcus sp. PCC 7002 SYNPCC7002_A1652 -14 4.6 GAGTAAAAATACCT
Synechocystis sp. PCC 6803 slr0772 -182 3.4 AAGCATTAAGAATT
Trichodesmium erythraeum IMS101 Tery_3812 -177 4.1 AGTTAAAAATACTT
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