Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcmR regulog to Nostoc punctiforme

Reference regulog properties
Source regulog: CcmR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: repressor
Biological process: Carbon dioxide fixation
Effector:
Phylum: Cyanobacteria
Propagated regulon:
Target genome Nostoc punctiforme
Orthologous TF(s) Npun_F4297
Regulated genes 6
Built upon 72 sites [see more]
Predicted regulatory interactions in Nostoc punctiforme
Locus tag Position Score Sequence
Position: -264
Score: 4.4
Sequence: ATAGATAAAAAACAAT
Locus tag: Npun_F3686
Npun_F3686 -264 4.4 ATAGATAAAAAACAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndhF3
Ortholog function: NADH dehydrogenase subunit F
Cyanothece sp. ATCC 51142 cce_0603 -74 5.5 ATAGACTTAATTCTAT
Cyanothece sp. PCC 8801 PCC8801_4247 -71 5.6 ATAGACTAAAGTCTAT
-8 5 ATTGTTATATGTCTAT
Gloeobacter violaceus PCC 7421 gvip132 -139 5 ATCTACTTTTATCTAT
Microcystis aeruginosa NIES-843 MAE_15120 -71 4.9 ATTGACTAGAATCTAT
Nostoc sp. PCC 7120 alr4156 -245 5.9 ATAGATTTTTGTCTAT
Synechococcus sp. JA-3-3Ab CYA_0640 -107 5 CTTGATTTTTGTCTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A0172 -63 5 ATTGACTCTAGTCTAT
Synechocystis sp. PCC 6803 sll1732 -204 3.9 ATTGTCGCTTGACTAT
Position: -118
Score: 5.4
Sequence: ATAGAGTTTTATCTAT
Locus tag: Npun_F4297
Npun_F4297 -118 5.4 ATAGAGTTTTATCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmR
Ortholog function: Carbon assimilation transcriptional regulator, LysR family
Cyanothece sp. PCC 7425 Cyan7425_3855 -93 5.9 ATAGATTTTTGTCTAT
Gloeobacter violaceus PCC 7421 gll1001 -34 5.2 ATAGAACTATGTCTAT
Nostoc sp. PCC 7120 all0862 -285 5.8 ATAGATTTTTATCTAT
-146 5.8 ATAGATTTTTATCTAT
-72 4.9 CTAGTCTTATATCTAT
Synechococcus elongatus PCC 7942 Synpcc7942_1310 -34 5.7 ATAGACTTAAATCTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A0171 -63 5 ATTGACTCTAGTCTAT
Thermosynechococcus elongatus BP-1 tlr2037 -42 5.1 ATAGAATTTCGTCTAT
© 2009-2020 RegPrecise