Propagation of KdgR regulog to Edwardsiella ictaluri 93-146
| Source regulog: | KdgR - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | IclR |
| Regulation mode: | repressor (activator) |
| Biological process: | Pectin and polygalacturonate utlization |
| Effector: | 2-keto-3-deoxygluconate |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Edwardsiella ictaluri 93-146 |
| Orthologous TF(s) | NT01EI_1731 |
| Regulated genes | 7 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -46
Score: 4.8 Sequence: TACTGAAACATAGGTTCGTTT
Locus tag: NT01EI_1731
|
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| NT01EI_1731 | -46 | 4.8 | TACTGAAACATAGGTTCGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgR | ||||
| Ortholog function: 2-keto-3-deoxy-D-gluconate repressor, IclR family | ||||
| Edwardsiella tarda EIB202 | ETAE_1567 | -46 | 4.8 | TACTGAAACAGAGGTTCGTTT |
|
Position: -129
Score: 5.6 Sequence: AATCAAAACAGTATTTCATTT
Locus tag: NT01EI_1801
|
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| NT01EI_1801 | -129 | 5.6 | AATCAAAACAGTATTTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kduI | ||||
| Ortholog function: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2843 | -130 | 6.3 | AAATGAAACATTGTTTTATTT |
| -63 | 5.4 | AAACGAAACAGTGTTTCACTA | ||
| Salmonella typhimurium LT2 | STM3018 | -123 | 6.2 | AAATGAAACGTTGTTTTATTT |
| -58 | 5.3 | AATCAAAACAGTGTTTTGATT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04220 | -119 | 6.2 | AAATGAAACAACGTTTTATTT |
| -51 | 4.4 | AAACGGAACGGTGTTTCGCCT | ||
| Enterobacter sp. 638 | Ent638_3296 | -127 | 5.4 | AACTGAAACAACGTTTTAAAT |
| -60 | 5 | AATCGGAACATTGTTTCGTTA | ||
| Yersinia pestis KIM | y1887 | -201 | 6 | TAATAAAACATCATTTCATTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2400 | -209 | 6.1 | AAATAAAACATTATTTCATTT |
| Edwardsiella tarda EIB202 | ETAE_1898 | -129 | 5.6 | AATCAAAACAGCATTTCATTT |
|
Position: -70
Score: 5.3 Sequence: ATAAGAAACATCGTTTTAAAT
Locus tag: NT01EI_2808
|
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| NT01EI_2808 | -70 | 5.3 | ATAAGAAACATCGTTTTAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aslB | ||||
| Ortholog function: chondro-6-sulfatase | ||||
| Edwardsiella tarda EIB202 | ETAE_2529 | -70 | 5.3 | ATAAGAAACATCGTTTTAAAT |
|
Position: -144
Score: 5.6 Sequence: TAATAAAACATCATTTCAAAT
Locus tag: NT01EI_3414
|
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| NT01EI_3414 | -144 | 5.6 | TAATAAAACATCATTTCAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: spiX | ||||
| Ortholog function: predicted 5-keto-4-deoxyuronate isomerase | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1742 | -54 | 5.1 | AATTGAAATACAGTTTTAAAA |
|
Position: -39
Score: 5.6 Sequence: AAATAAAACACAGTTTTATAA
Locus tag: NT01EI_3463
|
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| NT01EI_3463 | -39 | 5.6 | AAATAAAACACAGTTTTATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yjgK | ||||
| Ortholog function: cytoplasmic protein involved in polygalacturonate utilization | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4252 | -35 | 6 | AAATGAAACGTTGTTTTAATT |
| Salmonella typhimurium LT2 | STM4468 | -32 | 5.7 | AAATAAAACGCTGTTTTAACT |
| Citrobacter koseri ATCC BAA-895 | CKO_03553 | -33 | 6.2 | AAATGAAACGTTGTTTTATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04658 | -33 | 5.8 | AAATGAAATGCTGTTTTATAT |
| Enterobacter sp. 638 | Ent638_0453 | -34 | 6 | AAATGAAACATTGTTTTATAT |
| Yersinia pestis KIM | y0739 | -41 | 5.9 | TAATAAAACAGCATTTCATTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0383 | -41 | 5.1 | TTGTAAAACAGGGTTTCATTT |
| Edwardsiella tarda EIB202 | ETAE_3112 | -39 | 5.6 | AAATAAAACGCAGTTTTATAA |
|
Position: -127
Score: 5.4 Sequence: AAACAGAACGTTGTTTTATTT
Locus tag: NT01EI_3748
|
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| NT01EI_3748 | -127 | 5.4 | AAACAGAACGTTGTTTTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgK | ||||
| Ortholog function: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) | ||||
| Yersinia pestis KIM | y3838 | -225 | 5.1 | ATTTAAAACACCGTTTTAATC |
| Serratia proteamaculans 568 | Spro_4750 | -105 | 6.2 | AAATAAAACGTTGTTTTATTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4360 | -125 | 5.4 | AAATAAAACATCGTTTCAAGA |
| Edwardsiella tarda EIB202 | ETAE_3377 | -91 | 5.4 | AAACAGAACGTTGTTTTATTT |