Propagation of Crp regulog to Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601
| Source regulog: | Crp - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601 |
| Orthologous TF(s) | SSPA3110 |
| Regulated genes | 256 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -103
Score: 4.2 Sequence: GAATGTGATCAATTTAAAAATT
Locus tag: SSPA0001
|
||||
| SSPA0001 | -103 | 4.2 | GAATGTGATCAATTTAAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: thrL | ||||
| Ortholog function: Thr operon leader peptide | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0001 | -83 | 3.8 | TTTATTGACTTAGGTCACTAAA |
| Salmonella typhimurium LT2 | STM0001 | -103 | 4.2 | GAATGTGATCAATTTAAAAATT |
|
Position: -97
Score: 3.7 Sequence: AAACGAGCTATTCATCATATAT
Locus tag: SSPA0036
|
||||
| SSPA0036 | -97 | 3.7 | AAACGAGCTATTCATCATATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nhaA | ||||
| Ortholog function: Na+/H+ antiporter NhaA type | ||||
| Salmonella typhimurium LT2 | STM0039 | -97 | 3.7 | AAACGAGCTATTCATCATATAT |
| Yersinia pestis KIM | y3704 | -147 | 4.1 | AAATGTGATATGCGTTATCAAT |
| Serratia proteamaculans 568 | Spro_0694 | -120 | 4.7 | AAGTGTGATATAAATCGCTTAT |
| Proteus mirabilis HI4320 | PMI0011 | -110 | 3.9 | ATAAGCGATTGAGATCGAAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0587 | -122 | 4.4 | TATTGAGATGTAGATCATCAAT |
|
Position: -134
Score: 3.8 Sequence: AAGCACGATATTGCTCACACTA
Locus tag: SSPA0065
|
||||
| SSPA0065 | -134 | 3.8 | AAGCACGATATTGCTCACACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: caiF | ||||
| Ortholog function: transcriptional activator for carnitine metabolism | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0034 | -134 | 3.8 | AAGCAGGATTTAGCTCACACTT |
| Salmonella typhimurium LT2 | STM0068 | -134 | 3.8 | AAGCACGATATTGCTCACACTA |
| Citrobacter koseri ATCC BAA-895 | CKO_03349 | -144 | 3.8 | AAGCACGATTTCGCTCACACTA |
|
Position: -167
Score: 4.6 Sequence: AAGTGTGACACAGATAACAGAA
Locus tag: SSPA0071
|
||||
| SSPA0071 | -167 | 4.6 | AAGTGTGACACAGATAACAGAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: caiT | ||||
| Ortholog function: L-carnitine/gamma-butyrobetaine antiporter | ||||
| Salmonella typhimurium LT2 | STM0074 | -167 | 4.5 | AAGTGTGACGAAGATAACAGAA |
|
Position: -344
Score: 4.5 Sequence: TTCTGTTATCTGTGTCACACTT
Position: -196
Score: 3.7 Sequence: AATATTGAAAATTTTCATATTT
Position: -157
Score: 4 Sequence: ATTGGTGAGGTGCGTAACACTA
Locus tag: SSPA0072
|
||||
| SSPA0072 | -344 | 4.5 | TTCTGTTATCTGTGTCACACTT | |
| -196 | 3.7 | AATATTGAAAATTTTCATATTT | ||
| -157 | 4 | ATTGGTGAGGTGCGTAACACTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fixA | ||||
| Ortholog function: electron transfer flavoprotein, beta subunit | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0041 | -215 | 4.1 | ATTGGTGATCCATAAAACAATA |
| -158 | 4 | ATTGGTGAGGAACTTAACAATA | ||
| Salmonella typhimurium LT2 | STM0075 | -281 | 3.8 | ATTTTTGCTTTATTTATCAATT |
| -196 | 3.7 | AATATTGAAAATTTTCATATTT | ||
| -157 | 4 | ATTGGTGAGGTGCGTAACACTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03341 | -179 | 4 | ATTGGTGATCCATCAAACAATA |
| -122 | 4.4 | ATTAGTGAGATGCTTAACAATA | ||
| Edwardsiella tarda EIB202 | ETAE_2666 | -258 | 3.7 | ATTGGTGATCTATGTATTATTT |
| Proteus mirabilis HI4320 | PMI2653 | -216 | 4.3 | ATTGTTGATCCAGATAACAATA |
| -157 | 4.3 | ATTGGTGATGTATTTAGCAATA | ||
| -98 | 4 | ATTGGTGATCTAGATTTAATTT | ||
|
Position: -131
Score: 3.8 Sequence: ATATTTGCACAGCGTCACACTT
Locus tag: SSPA0101
|
||||
| SSPA0101 | -131 | 3.8 | ATATTTGCACAGCGTCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: araB | ||||
| Ortholog function: L-ribulokinase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0063 | -131 | 3.9 | TTATTTGCACGGCGTCACACTT |
| Salmonella typhimurium LT2 | STM0103 | -131 | 3.8 | ATATTTGCACAGCGTCACACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_03319 | -132 | 3.9 | ATATTTGCACGGCGTCACACTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00062 | -130 | 3.9 | ATATTTGCACGGCGTCACACTT |
| Enterobacter sp. 638 | Ent638_0610 | -130 | 3.8 | TTATTTGCACAGCGTCACACTT |
|
Position: -231
Score: 4.5 Sequence: AAGTGTGACGCTGTGCAAATAT
Locus tag: SSPA0102
|
||||
| SSPA0102 | -231 | 4.5 | AAGTGTGACGCTGTGCAAATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: araC | ||||
| Ortholog function: DNA-binding transcriptional dual regulator | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0064 | -229 | 4.4 | AAGTGTGACGCCGTGCAAATAA |
| Salmonella typhimurium LT2 | STM0104 | -231 | 4.5 | AAGTGTGACGCTGTGCAAATAT |
| Citrobacter koseri ATCC BAA-895 | CKO_03318 | -230 | 4.4 | AAGTGTGACGCCGTGCAAATAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00063 | -229 | 4.4 | AAGTGTGACGCCGTGCAAATAT |
| Enterobacter sp. 638 | Ent638_0611 | -228 | 4.4 | AAGTGTGACGCTGTGCAAATAA |
|
Position: -127
Score: 3.8 Sequence: GGGTGTTATCTGCCTCACAGTT
Locus tag: SSPA0149
|
||||
| SSPA0149 | -127 | 3.8 | GGGTGTTATCTGCCTCACAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: araT | ||||
| Ortholog function: putative permease of the Na+:galactoside symporter family | ||||
| Salmonella typhimurium LT2 | STM0149 | -127 | 3.8 | GGGTGTTATCTGCCTCACAGTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00115 | -171 | 4.7 | CATTGTTATCTGCTTCACACTT |
|
Position: -302
Score: 3.1 Sequence: TGATTTGTTTTTATTCATTATT
Position: -157
Score: 3.5 Sequence: AAACATGATTTCTGTAAAATTG
Position: -120
Score: 3.2 Sequence: TTTACTGATTTCAATCAAAACC
Locus tag: SSPA0151
|
||||
| SSPA0151 | -302 | 3.1 | TGATTTGTTTTTATTCATTATT | |
| -157 | 3.5 | AAACATGATTTCTGTAAAATTG | ||
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pdhR | ||||
| Ortholog function: Transcriptional repressor for pyruvate dehydrogenase complex | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0113 | -156 | 3.7 | AAACGTTATATATGTCAAGTTG |
| -131 | 3.8 | AAATGTGCACAGTTTCATGATT | ||
| Salmonella typhimurium LT2 | STM0151 | -157 | 3.5 | AAACATGATTTCTGTAAAATTG |
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| -79 | 3 | CTTATTAAGCTTTCTCACGAAA | ||
| -54 | 3.4 | TAATGGGACAGGTTCCAGATAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03260 | -180 | 3.2 | ATTTGTGCATAGTTACATCTTT |
| -157 | 3.1 | AAACGTTATTTCTGTAATCTTG | ||
| -148 | 3.3 | TTCTGTAATCTTGTTAAAATGT | ||
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00117 | -155 | 3.2 | AAATGTTATTTCTGTAAGGTTG |
| -118 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Enterobacter sp. 638 | Ent638_0659 | -120 | 3.2 | TTTACTGATTTCAATCAAAACC |
| -77 | 3.1 | TATTGTATTTTCTGGCGAAAAT | ||
| -68 | 3 | TTTAGCGATACGAATATGAAAT | ||
| Erwinia amylovora ATCC 49946 | EAM_0746 | -198 | 3.3 | TAAAGCGATCGGATTTAACAAT |
| Yersinia pestis KIM | y0766 | -151 | 4.2 | AAATGTGCTGGGTTTCATGATT |
| -139 | 3.3 | TTTCATGATTTCGGTCAAGGTC | ||
| -74 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Serratia proteamaculans 568 | Spro_4012 | -132 | 3.1 | AAATGTGCGGGTAACCTGATTT |
| -56 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3790 | -120 | 3.7 | ATTGGTGATTTAGCTCAAGGTC |
| -55 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Edwardsiella tarda EIB202 | ETAE_0658 | -143 | 3.2 | TTTCATGATTTACATCAATAGT |
| Proteus mirabilis HI4320 | PMI2047 | -218 | 3.1 | TGTTTTTAATCTTTTCTAATAA |
| -199 | 4.4 | TAATGCGATCTAGTTATCAAAT | ||
| -181 | 4.2 | AAATTTGATGAATTTATCAAAT | ||
| -158 | 3 | ATTTGTTAAAATTTGCAGGTTT | ||
| -138 | 3.9 | TTTTATGATTTCGCTCAACAAC | ||
| -95 | 3.1 | CTTTGTTACTTTATTATCCATT | ||
| -89 | 3.1 | TACTTTATTATCCATTACATTA | ||
|
Position: -54
Score: 3.4 Sequence: TAATGGGACAGGTTCCAGATAA
Locus tag: SSPA0152
|
||||
| SSPA0152 | -54 | 3.4 | TAATGGGACAGGTTCCAGATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aceE | ||||
| Ortholog function: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0114 | -156 | 3.7 | AAACGTTATATATGTCAAGTTG |
| -131 | 3.8 | AAATGTGCACAGTTTCATGATT | ||
| Salmonella typhimurium LT2 | STM0152 | -157 | 3.5 | AAACATGATTTCTGTAAAATTG |
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| -79 | 3 | CTTATTAAGCTTTCTCACGAAA | ||
| -54 | 3.4 | TAATGGGACAGGTTCCAGATAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03259 | -180 | 3.2 | ATTTGTGCATAGTTACATCTTT |
| -157 | 3.1 | AAACGTTATTTCTGTAATCTTG | ||
| -148 | 3.3 | TTCTGTAATCTTGTTAAAATGT | ||
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00118 | -155 | 3.2 | AAATGTTATTTCTGTAAGGTTG |
| -118 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Enterobacter sp. 638 | Ent638_0660 | -120 | 3.2 | TTTACTGATTTCAATCAAAACC |
| -77 | 3.1 | TATTGTATTTTCTGGCGAAAAT | ||
| -68 | 3 | TTTAGCGATACGAATATGAAAT | ||
| Erwinia amylovora ATCC 49946 | EAM_0747 | -198 | 3.3 | TAAAGCGATCGGATTTAACAAT |
| Yersinia pestis KIM | y0767 | -151 | 4.2 | AAATGTGCTGGGTTTCATGATT |
| -139 | 3.3 | TTTCATGATTTCGGTCAAGGTC | ||
| -74 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Serratia proteamaculans 568 | Spro_4011 | -132 | 3.1 | AAATGTGCGGGTAACCTGATTT |
| -56 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3789 | -120 | 3.7 | ATTGGTGATTTAGCTCAAGGTC |
| -55 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Edwardsiella tarda EIB202 | ETAE_0659 | -143 | 3.2 | TTTCATGATTTACATCAATAGT |
| Proteus mirabilis HI4320 | PMI2046 | -218 | 3.1 | TGTTTTTAATCTTTTCTAATAA |
| -199 | 4.4 | TAATGCGATCTAGTTATCAAAT | ||
| -181 | 4.2 | AAATTTGATGAATTTATCAAAT | ||
| -158 | 3 | ATTTGTTAAAATTTGCAGGTTT | ||
| -138 | 3.9 | TTTTATGATTTCGCTCAACAAC | ||
| -95 | 3.1 | CTTTGTTACTTTATTATCCATT | ||
| -89 | 3.1 | TACTTTATTATCCATTACATTA | ||
|
Position: -1
Score: 3.4 Sequence: AATGGCTATCGAAATCAAAGTA
Locus tag: SSPA0153
|
||||
| SSPA0153 | -1 | 3.4 | AATGGCTATCGAAATCAAAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aceF | ||||
| Ortholog function: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0115 | -156 | 3.7 | AAACGTTATATATGTCAAGTTG |
| -131 | 3.8 | AAATGTGCACAGTTTCATGATT | ||
| Salmonella typhimurium LT2 | STM0153 | -157 | 3.5 | AAACATGATTTCTGTAAAATTG |
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| -79 | 3 | CTTATTAAGCTTTCTCACGAAA | ||
| -54 | 3.4 | TAATGGGACAGGTTCCAGATAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03258 | -180 | 3.2 | ATTTGTGCATAGTTACATCTTT |
| -157 | 3.1 | AAACGTTATTTCTGTAATCTTG | ||
| -148 | 3.3 | TTCTGTAATCTTGTTAAAATGT | ||
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00119 | -155 | 3.2 | AAATGTTATTTCTGTAAGGTTG |
| -118 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Enterobacter sp. 638 | Ent638_0661 | -120 | 3.2 | TTTACTGATTTCAATCAAAACC |
| -77 | 3.1 | TATTGTATTTTCTGGCGAAAAT | ||
| -68 | 3 | TTTAGCGATACGAATATGAAAT | ||
| Erwinia amylovora ATCC 49946 | EAM_0748 | -198 | 3.3 | TAAAGCGATCGGATTTAACAAT |
| Yersinia pestis KIM | y0768 | -151 | 4.2 | AAATGTGCTGGGTTTCATGATT |
| -139 | 3.3 | TTTCATGATTTCGGTCAAGGTC | ||
| -74 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Serratia proteamaculans 568 | Spro_4010 | -132 | 3.1 | AAATGTGCGGGTAACCTGATTT |
| -56 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3788 | -120 | 3.7 | ATTGGTGATTTAGCTCAAGGTC |
| -55 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Edwardsiella tarda EIB202 | ETAE_0660 | -143 | 3.2 | TTTCATGATTTACATCAATAGT |
| Proteus mirabilis HI4320 | PMI2045 | -218 | 3.1 | TGTTTTTAATCTTTTCTAATAA |
| -199 | 4.4 | TAATGCGATCTAGTTATCAAAT | ||
| -181 | 4.2 | AAATTTGATGAATTTATCAAAT | ||
| -158 | 3 | ATTTGTTAAAATTTGCAGGTTT | ||
| -138 | 3.9 | TTTTATGATTTCGCTCAACAAC | ||
| -95 | 3.1 | CTTTGTTACTTTATTATCCATT | ||
| -89 | 3.1 | TACTTTATTATCCATTACATTA | ||
|
Position: -153
Score: 4.1 Sequence: TTTTGTGAGGTTATTAGCGAAA
Position: -125
Score: 3.3 Sequence: ATTCGTGATCCGTTTGTTGTTT
Locus tag: SSPA0154
|
||||
| SSPA0154 | -153 | 4.1 | TTTTGTGAGGTTATTAGCGAAA | |
| -125 | 3.3 | ATTCGTGATCCGTTTGTTGTTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lpdA | ||||
| Ortholog function: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0116 | -224 | 3.3 | AATTGTTAACAATTTTGTAAAA |
| Salmonella typhimurium LT2 | STM0154 | -153 | 3.5 | GTTTGTGAGGTTATTAGCGAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03256 | -95 | 3.3 | AATTGTTAACAATTTTGTAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00120 | -105 | 3.3 | AATTGTTAACAATTTTGTAAAA |
| Yersinia pestis KIM | y0769 | -253 | 3.3 | ATTGGTGATCTTGTTATTACTG |
| Serratia proteamaculans 568 | Spro_4009 | -246 | 3.6 | TATGGTGATGTAATGAAAAAAG |
| Proteus mirabilis HI4320 | PMI2044 | -133 | 3.4 | GGTTGTGAGATCTGTCATGTTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3621 | -131 | 3.9 | TGTTGCGAGTTCTGTCACGTTA |
|
Position: -157
Score: 3.9 Sequence: TTTTGTAAACAGATTAACACTT
Locus tag: SSPA0158
|
||||
| SSPA0158 | -157 | 3.9 | TTTTGTAAACAGATTAACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acnB | ||||
| Ortholog function: Aconitate hydratase 2 (EC 4.2.1.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0118 | -144 | 3.5 | TTTTGTAAACAGATTAACACCT |
| Salmonella typhimurium LT2 | STM0158 | -157 | 3.9 | TTTTGTAAACAGATTAACACTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00124 | -260 | 3.5 | TTTTGTAAACAGATTAACACCT |
| Yersinia pestis KIM | y0771 | -276 | 4.3 | TTATGTGAACGAATTAACACTG |
| Serratia proteamaculans 568 | Spro_4008 | -192 | 3.9 | TTATGTGAACGAATTAACAACC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3778 | -163 | 4.3 | TTATGTGAACGAATTAACAATC |
| Proteus mirabilis HI4320 | PMI2040 | -177 | 4.5 | TTATGTGAACGAATTAACATAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3619 | -261 | 3.6 | TTCTGTGAACGAATTAACATCG |
|
Position: -147
Score: 5.3 Sequence: ATGTGTGATCGTCATCACAAAA
Locus tag: SSPA0169
|
||||
| SSPA0169 | -147 | 5.3 | ATGTGTGATCGTCATCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hpt | ||||
| Ortholog function: hypoxanthine phosphoribosyltransferase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0125 | -147 | 5.3 | ATGTGTGATCGTCATCACAATT |
| Salmonella typhimurium LT2 | STM0170 | -147 | 5.3 | ATGTGTGATCGTCATCACAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03242 | -135 | 5.3 | AAGTGTGATCGTCATCACAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00133 | -134 | 5.4 | AAGTGTGATCGGAATCACAAAT |
| Enterobacter sp. 638 | Ent638_0673 | -180 | 3.6 | AATTTTGATAGCAATTAATTAT |
| -148 | 5.4 | AAGTGTGATCGGAATCACAAAT | ||
| Proteus mirabilis HI4320 | PMI0160 | -154 | 3.6 | TACTGTAATAAGTAACAAAATT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0860 | -144 | 4 | AATTCTGATATGCTTTGCAAAA |
|
Position: -128
Score: 4.2 Sequence: TTTATTGATTTAAATCAAAGAA
Locus tag: SSPA0257
|
||||
| SSPA0257 | -128 | 4.2 | TTTATTGATTTAAATCAAAGAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: grcA | ||||
| Ortholog function: Autonomous glycyl radical cofactor | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00205 | -127 | 4 | TTTGTTGATTTAAATCAAAGAA |
|
Position: -106
Score: 3.9 Sequence: TTCTGTGACGTTCCTCAGCATT
Locus tag: SSPA0295
|
||||
| SSPA0295 | -106 | 3.9 | TTCTGTGACGTTCCTCAGCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: csiE | ||||
| Ortholog function: Stationary phase inducible protein CsiE | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2535 | -104 | 3.5 | TTCTGTGACGCTTGCCAACATT |
| Salmonella typhimurium LT2 | STM2553 | -106 | 3.8 | TTCTGTGACACTCCTCAGCATT |
| Citrobacter koseri ATCC BAA-895 | CKO_00245 | -105 | 3.4 | TTCTGTGATGCTCGCCAGCATT |
| -42 | 3.6 | TTTAGCTATCCTTATCAAACAA | ||
| Erwinia amylovora ATCC 49946 | EAM_2496 | -103 | 3.4 | TTTTGTGACCTGCCTTAAAAGC |
| Yersinia pestis KIM | y1328 | -161 | 4.1 | TAATGTAACACATAGCGCATTA |
| Serratia proteamaculans 568 | Spro_3633 | -276 | 3.4 | AAAGGTGGTGTTCATATCAATA |
|
Position: -282
Score: 4 Sequence: TTATGTGACTTACTGCAATATT
Locus tag: SSPA0362
|
||||
| SSPA0362 | -282 | 4 | TTATGTGACTTACTGCAATATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yffB | ||||
| Ortholog function: FIG138056: a glutathione-dependent thiol reductase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2471 | -246 | 3.8 | GTATGTGATACACAGCAACATT |
| Salmonella typhimurium LT2 | STM2482 | -282 | 4 | TTATGTGACTTACTGCAATATT |
| Citrobacter koseri ATCC BAA-895 | CKO_00317 | -276 | 4 | TTATGTGACTTACTGCAATATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02804 | -218 | 4 | TAATGTGACGTAGAGCAACCTC |
| -179 | 4 | TAATGTTAAAGCCCTCACATCA | ||
| Enterobacter sp. 638 | Ent638_2966 | -254 | 4 | TTATGTGACCAATAGCAATATT |
| -77 | 3.6 | ATATGTTATGTTTTGCCAAATA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1292 | -138 | 3.7 | TTCTGCAACGCAGTTCACAGTA |
|
Position: -11
Score: 3.6 Sequence: TGGAGTGATTTATGTCCCGTAA
Locus tag: SSPA0369
|
||||
| SSPA0369 | -11 | 3.6 | TGGAGTGATTTATGTCCCGTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tktB | ||||
| Ortholog function: Transketolase (EC 2.2.1.1) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2465 | -83 | 4 | TTTTTTGATGCGTTTAGCGAAA |
| -53 | 3.9 | AAGTGTGAATTAACGCACTCAT | ||
| Salmonella typhimurium LT2 | STM2474 | -53 | 3.7 | AAGTGTGAATCAACACACTCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02799 | -80 | 3.7 | TTTGGTTATGTACCTCATCAAT |
| Enterobacter sp. 638 | Ent638_2960 | -152 | 3.6 | ATTTGTTATCAATTTATAACAA |
| -83 | 3.9 | TTTTGTTAAGTACGTCATGTAT | ||
|
Position: -53
Score: 3.7 Sequence: AAGTGTGAATCAACACACTCAT
Locus tag: SSPA0370
|
||||
| SSPA0370 | -53 | 3.7 | AAGTGTGAATCAACACACTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: talA | ||||
| Ortholog function: Transaldolase (EC 2.2.1.2) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2464 | -83 | 4 | TTTTTTGATGCGTTTAGCGAAA |
| -53 | 3.9 | AAGTGTGAATTAACGCACTCAT | ||
| Salmonella typhimurium LT2 | STM2473 | -53 | 3.7 | AAGTGTGAATCAACACACTCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02798 | -80 | 3.7 | TTTGGTTATGTACCTCATCAAT |
| Enterobacter sp. 638 | Ent638_2959 | -152 | 3.6 | ATTTGTTATCAATTTATAACAA |
| -83 | 3.9 | TTTTGTTAAGTACGTCATGTAT | ||
|
Position: -240
Score: 3.8 Sequence: ATGAGTGTGTTGATTCACACTT
Locus tag: SSPA0371
|
||||
| SSPA0371 | -240 | 3.8 | ATGAGTGTGTTGATTCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: maeB | ||||
| Ortholog function: malic enzyme | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2463 | -257 | 3.9 | ATGAGTGCGTTAATTCACACTT |
| Salmonella typhimurium LT2 | STM2472 | -240 | 3.8 | ATGAGTGTGTTGATTCACACTT |
| Enterobacter sp. 638 | Ent638_2958 | -231 | 4.1 | ATACATGACGTACTTAACAAAA |
| Yersinia pestis KIM | y1449 | -92 | 3.7 | GATTGTGATAAATCACTCACTA |
| Serratia proteamaculans 568 | Spro_3472 | -209 | 3.6 | CTTTGTTATCAAACTCACTATC |
| -90 | 4.1 | GTTTGTGACGTTTCTCTCACTA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2719 | -74 | 4 | TGTTATGATTTGACACACAGTA |
|
Position: -103
Score: 4.6 Sequence: CTTAGTGATCTACCTCACCTTT
Locus tag: SSPA0372
|
||||
| SSPA0372 | -103 | 4.6 | CTTAGTGATCTACCTCACCTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: b2462 | ||||
| Ortholog function: putative carboxysome structural protein, ethanol utilization | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2462 | -103 | 4.6 | CTTAGTGATCTACCTCACCTTT |
| Salmonella typhimurium LT2 | STM2470 | -168 | 3.8 | AAATGTGATGCACCACGATATT |
| -103 | 4.6 | CTTAGTGATCTACCTCACCTTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00333 | -103 | 4.6 | CTTAGTGATCTACTTCACCTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02796 | -102 | 4.3 | CTGAGTGATCCACTTCACCTTT |
|
Position: -337
Score: 4.2 Sequence: TTTTGTGGCCTGCTTCAAACTT
Position: -209
Score: 4 Sequence: TTTTATGATTTGGTTCAACTCT
Locus tag: SSPA0407
|
||||
| SSPA0407 | -337 | 4.2 | TTTTGTGGCCTGCTTCAAACTT | |
| -209 | 4 | TTTTATGATTTGGTTCAACTCT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ptsH | ||||
| Ortholog function: PTS system phosphocarrier protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2415 | -209 | 3.9 | TTTTATGATTTGGTTCAATTCT |
| Salmonella typhimurium LT2 | STM2431 | -209 | 4.4 | TTTTATGATTTGGTTCAAATCT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02762 | -206 | 4 | TTTTATGATTTGGTTCAAGTCT |
| Enterobacter sp. 638 | Ent638_2943 | -271 | 4.4 | TTTTGTGGTCCACTTCAAACTT |
| -144 | 4 | TTTTATGATTTGGTTCAAGTCT | ||
| Serratia proteamaculans 568 | Spro_3448 | -149 | 3.6 | TTTTTTGATCTGAAGTGCCAAA |
| Proteus mirabilis HI4320 | PMI1828 | -275 | 4.4 | TTTTGTGGTAGAGATCAAACTT |
| -115 | 3.6 | TAACGTAACATGGCTTATATTA | ||
|
Position: -37
Score: 3.6 Sequence: AAAATTGATTTATTGCATCTAT
Locus tag: SSPA0414
|
||||
| SSPA0414 | -37 | 3.6 | AAAATTGATTTATTGCATCTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfeR | ||||
| Ortholog function: transcriptional regulator, LysR family | ||||
| Salmonella typhimurium LT2 | STM2424 | -37 | 3.6 | AAAATTGATTTATTGCATCTAT |
| Citrobacter koseri ATCC BAA-895 | CKO_00385 | -37 | 3.6 | AAAATTGATTTATTGCATCTAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02755 | -112 | 3.6 | AAAATTGATTTATTGCATCTAT |
| Erwinia amylovora ATCC 49946 | EAM_2384 | -33 | 3.7 | TTAATTTATTGAATTCATATAT |
| Serratia proteamaculans 568 | Spro_3441 | -33 | 3.6 | TTGATTTATTTAATTCATATAT |
|
Position: -109
Score: 3.9 Sequence: AATATAGATCTTCATCACAGAA
Locus tag: SSPA0423
|
||||
| SSPA0423 | -109 | 3.9 | AATATAGATCTTCATCACAGAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfeO | ||||
| Ortholog function: Chloride channel protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2389 | -109 | 4.1 | AATATCGATCTGGGTCACACAA |
| Salmonella typhimurium LT2 | STM2404 | -109 | 3.9 | AATATAGATCTTCATCACAGAA |
| Citrobacter koseri ATCC BAA-895 | CKO_00411 | -134 | 4.4 | AATATCGATCTGCATCACATAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02739 | -192 | 4.3 | TTTAGCGACACAGGTCACATTT |
| Enterobacter sp. 638 | Ent638_2922 | -111 | 3.7 | ATAATCGATCTTCGTCACAGAA |
| Serratia proteamaculans 568 | Spro_3408 | -249 | 4.7 | ATTAGCGATCCGGATCACAAAA |
|
Position: -116
Score: 3.9 Sequence: TTCTGTGATGAAGATCTATATT
Locus tag: SSPA0424
|
||||
| SSPA0424 | -116 | 3.9 | TTCTGTGATGAAGATCTATATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glk | ||||
| Ortholog function: glucokinase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2388 | -116 | 4.1 | TTGTGTGACCCAGATCGATATT |
| Salmonella typhimurium LT2 | STM2403 | -116 | 3.9 | TTCTGTGATGAAGATCTATATT |
| Citrobacter koseri ATCC BAA-895 | CKO_00412 | -116 | 4.5 | TTATGTGATGCAGATCGATATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02738 | -117 | 4.4 | AAATGTGACCTGTGTCGCTAAA |
| Enterobacter sp. 638 | Ent638_2921 | -116 | 3.8 | TTCTGTGACGAAGATCGATTAT |
| Yersinia pestis KIM | y1505 | -113 | 4.7 | TTATGAGATGTCAGTCACAAAA |
| Serratia proteamaculans 568 | Spro_3407 | -116 | 4.8 | TTTTGTGATCCGGATCGCTAAT |
|
Position: -262
Score: 4.8 Sequence: TTAAGTGACCGAAATCACACTT
Position: -240
Score: 3.9 Sequence: TAAAATGATCTAAAACAAAAAT
Locus tag: SSPA0437
|
||||
| SSPA0437 | -262 | 4.8 | TTAAGTGACCGAAATCACACTT | |
| -240 | 3.9 | TAAAATGATCTAAAACAAAAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadL | ||||
| Ortholog function: Long-chain fatty acid transport protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2344 | -269 | 4.8 | ATAAGTGACCGAAATCACACTT |
| -247 | 3.9 | AAAAATGATCTAAAACAAAATT | ||
| Salmonella typhimurium LT2 | STM2391 | -262 | 4.8 | TTAAGTGACCGAAATCACACTT |
| -240 | 3.9 | AAAAATGATCTAAAACAAAAAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00446 | -263 | 4.8 | ATAAGTGACCGAAATCACACTT |
| -241 | 3.9 | AAAAATGATCTAAAACAAAAAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02726 | -264 | 4.7 | TTAAGTGACAGAAATCACACTT |
| -242 | 3.9 | AAAAATGATCTAAAACAAAAAT | ||
| Enterobacter sp. 638 | Ent638_2884 | -269 | 4.2 | GTAAGTGACCGATATCACACTA |
| -247 | 4 | AAAAATGATCTAGCGCAAAAAT | ||
| -214 | 3.7 | ATGAGTGCGACGGCTCGCATTT | ||
| Erwinia amylovora ATCC 49946 | EAM_2348 | -194 | 3.9 | TTTTGTTAAGCAGATCTCTTTT |
| Serratia proteamaculans 568 | Spro_3381 | -271 | 5.1 | TTAAGTGATGGAAATCACAAAT |
| -196 | 3.8 | TTTTGTTAGCCAGATCTCTCTT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3081 | -332 | 3.8 | AATTTTTATCTTCCTTATATTT |
| -262 | 4.9 | TTTAGTGATATCAGTCACATTA | ||
| Proteus mirabilis HI4320 | PMI1810 | -326 | 3.7 | AAGTGTTAATTATCTATCATAA |
| -186 | 4.2 | TAATGTTAACTAAATCCCAAAT | ||
|
Position: -143
Score: 4.6 Sequence: AATTGTGATAGCGCTATCAAAT
Locus tag: SSPA0483
|
||||
| SSPA0483 | -143 | 4.6 | AATTGTGATAGCGCTATCAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: CKO_00488 | ||||
| Ortholog function: LacI-family transcriptional regulator | ||||
| Salmonella typhimurium LT2 | STM2345 | -192 | 4 | AGCTGCGATCGTTATCACAAAG |
| -143 | 4.6 | AATTGTGATAGCGCTATCAAAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00488 | -192 | 4.6 | ATCTGTGATCATATTCACAAAG |
| -143 | 4.5 | ATATGTGATAGCGCTATCAAAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01748 | -155 | 4.2 | AACTGTGATACACCTCCCAAAG |
| -53 | 3.6 | AGTTATAATGCGATTCGCAGAT | ||
| Enterobacter sp. 638 | Ent638_2847 | -178 | 4.1 | AGCTGCGATCAAGATCACAAAG |
| -129 | 4.6 | AATTGTGATAGCGCTATCAAAT | ||
| Yersinia pestis KIM | y1619 | -208 | 5.4 | TAATGTGATCTGGATCTCAATT |
| -158 | 4.6 | ATTTGTGATAGCGCTATCATTT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3772 | -246 | 4.5 | TAATGTGATTAACATCCAAAAA |
| -196 | 4 | AACTGTGACCGGCTTAGCACAA | ||
| Edwardsiella tarda EIB202 | ETAE_3025 | -210 | 4.3 | TTTCGTGATAGCGCTATCATTT |
| Proteus mirabilis HI4320 | PMI1778 | -139 | 4.2 | AATTGTGATAGCGCTATTATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1978 | -195 | 3.8 | GCTAGTGATATTAGTCACAAAT |
| -145 | 4.7 | AATTGTGATAGCGCTATCATTT | ||
|
Position: -329
Score: 3.6 Sequence: ATTTATGATACGTGGCTAAAAA
Locus tag: SSPA0492
|
||||
| SSPA0492 | -329 | 3.6 | ATTTATGATACGTGGCTAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfbV | ||||
| Ortholog function: putative cytoplasmic protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2295 | -263 | 3.6 | ATTTATGATTAACATCATGCAC |
| -54 | 4.1 | AGTTGTGAATTTGCACAAATTT | ||
| Erwinia amylovora ATCC 49946 | EAM_2300 | -44 | 4 | TTGTGTGTTTTTTTTAAAATTT |
| Edwardsiella tarda EIB202 | ETAE_2396 | -34 | 3.6 | TTTTTTAACTCTTATCGAATAA |
| Proteus mirabilis HI4320 | PMI1770 | -290 | 3.7 | ATTAATGATACGCATCATGCTT |
| -260 | 3.6 | AAACTTGATGCTAATTATAGTT | ||
|
Position: -163
Score: 5 Sequence: TAATGTGAATTACAGCACATAT
Locus tag: SSPA0545
|
||||
| SSPA0545 | -163 | 5 | TAATGTGAATTACAGCACATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpA | ||||
| Ortholog function: sn-glycerol-3-phosphate dehydrogenase subunit A | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2241 | -165 | 4.6 | AAATGTGAATTGCCGCACACAT |
| Salmonella typhimurium LT2 | STM2284 | -163 | 5 | TAATGTGAATTACAGCACATAT |
| Citrobacter koseri ATCC BAA-895 | CKO_00536 | -163 | 4.7 | TAATGTGAATTACAGCACAGAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02647 | -165 | 4.3 | TACTGTGAAACATCGCACAATT |
| -115 | 3.8 | ATGTGAGCACGAAATCACATAA | ||
| Enterobacter sp. 638 | Ent638_2805 | -163 | 4.1 | TACTGTGAATCAACGCACAGAT |
| Yersinia pestis KIM | y0404 | -231 | 3.6 | AATTGTTACCTATTTTATGAAA |
| -155 | 4.4 | ACCTGTGATTTTGATCACAATC | ||
| Serratia proteamaculans 568 | Spro_0200 | -231 | 3.6 | CGCTGTGATGGATGGCGCAATT |
| -138 | 4.9 | AATCGTGATTATGATCACATTC | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4165 | -148 | 5.1 | TTTAGTGATGCAAATCACACTT |
| Edwardsiella tarda EIB202 | ETAE_3115 | -247 | 4 | TACTGTGAGAGATCGCTCATAT |
| -142 | 4.8 | TAGAGTGATTTTGATCACATTG | ||
| Proteus mirabilis HI4320 | PMI3592 | -262 | 3.7 | TACTGTGAAGTAATACTCAGTT |
| -170 | 5.5 | ATTTGTGATTAGTATCACATAT | ||
|
Position: -220
Score: 3.6 Sequence: ATGTTTGATTTCGCGCATAATC
Position: -180
Score: 4.2 Sequence: AAACGTGATTTCGTGCGCCTTT
Position: -131
Score: 5.2 Sequence: ATATGTGCTGTAATTCACATTA
Locus tag: SSPA0546
|
||||
| SSPA0546 | -220 | 3.6 | ATGTTTGATTTCGCGCATAATC | |
| -180 | 4.2 | AAACGTGATTTCGTGCGCCTTT | ||
| -131 | 5.2 | ATATGTGCTGTAATTCACATTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpT | ||||
| Ortholog function: glycerol-3-phosphate transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2240 | -219 | 3.7 | TTGTTTGATTTCGCGCATATTC |
| -179 | 3.6 | AAACGTGATTTCATGCGTCATT | ||
| -129 | 4.6 | ATGTGTGCGGCAATTCACATTT | ||
| Salmonella typhimurium LT2 | STM2283 | -220 | 3.6 | ATGTTTGATTTCGCGCATAATC |
| -180 | 4.2 | AAACGTGATTTCGTGCGCCTTT | ||
| -131 | 5.2 | ATATGTGCTGTAATTCACATTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00537 | -221 | 3.6 | TTGTTTGATTTCGCGCATAATC |
| -181 | 4 | AAACGTGATTTCGTGCGCTTTT | ||
| -132 | 4.8 | ATCTGTGCTGTAATTCACATTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02646 | -218 | 3.8 | TTGTTTGATTTCGAGCATATTC |
| -178 | 4.6 | TTATGTGATTTCGTGCTCACAT | ||
| -128 | 4.5 | AATTGTGCGATGTTTCACAGTA | ||
| Enterobacter sp. 638 | Ent638_2804 | -201 | 3.6 | TTGTTTGATTTCGAACATAATC |
| -161 | 3.8 | AAGCGTGATCTCATGCGCTTAT | ||
| -111 | 4 | ATCTGTGCGTTGATTCACAGTA | ||
| Erwinia amylovora ATCC 49946 | EAM_0195 | -240 | 3.7 | AAACGCGATGCGGTTAACGATG |
| -147 | 3.7 | ATTTGTGCCTCTCTTCACGGTC | ||
| Serratia proteamaculans 568 | Spro_0199 | -249 | 4.5 | GAATGTGATCATAATCACGATT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4166 | -253 | 3.7 | ATGTTTGATAAAGAGCAAAAAC |
| -193 | 4.9 | AAGTGTGATTTGCATCACTAAA | ||
| Edwardsiella tarda EIB202 | ETAE_3116 | -200 | 3.7 | ATATGAGCGATCTCTCACAGTA |
| Proteus mirabilis HI4320 | PMI3591 | -291 | 3.6 | ATGTTTGATAATGAGCAAAAAC |
| -232 | 5.4 | ATATGTGATACTAATCACAAAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4119 | -250 | 4.9 | TATTGTGACAATTGTCACAATT |
|
Position: -200
Score: 3.6 Sequence: AAGGTTGAGTTAGATCGCAGAA
Locus tag: SSPA0592
|
||||
| SSPA0592 | -200 | 3.6 | AAGGTTGAGTTAGATCGCAGAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yejG | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2181 | -158 | 3.7 | AAACGTGACCACGCCCGCAGAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02614 | -204 | 3.8 | AAAGTTGTTTTGGATCACAGAA |
| Erwinia amylovora ATCC 49946 | EAM_2233 | -177 | 3.6 | AAATGAGCATTACTTCTCAAAA |
| Yersinia pestis KIM | y2914 | -238 | 4.4 | AAATGGGATCTGAATCCCAAAT |
| Serratia proteamaculans 568 | Spro_3250 | -214 | 4.2 | AAATGCGAGCTGAGTCGCAAAA |
| -121 | 4.1 | GCTTGTGATGTTTTTTACATTT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2740 | -178 | 4 | ATTCGTGATCAGTTTGGCATTA |
| -101 | 3.8 | TGTTGTTTTTTTGTTCACGAAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2865 | -185 | 4.1 | AAATGAGAGATTGATCTCACTT |
| -183 | 3.6 | ATGAGAGATTGATCTCACTTTT | ||
| -141 | 3.8 | TAATGTAATACTATAAACACAA | ||
|
Position: -128
Score: 3.7 Sequence: ATTTGTGCGTTCCGCCACAGAT
Locus tag: SSPA0598
|
||||
| SSPA0598 | -128 | 3.7 | ATTTGTGCGTTCCGCCACAGAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: spr | ||||
| Ortholog function: predicted peptidase, outer membrane lipoprotein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2175 | -130 | 4.1 | TTTTGTGCGTTAGTCCACAGAT |
| Salmonella typhimurium LT2 | STM2214 | -128 | 3.7 | ATTTGTGCGTTCCGCCACAGAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02608 | -292 | 3.6 | TAGGGTAATCTCGTTCTCGTTT |
| -234 | 4.2 | AATTGTGCGTGACTGCACAAAT | ||
| Enterobacter sp. 638 | Ent638_2771 | -250 | 3.6 | AATCGCTTTGTCTATCACAATT |
| Yersinia pestis KIM | y2908 | -128 | 3.7 | GAATGTGCGTTCATGCACATTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2735 | -159 | 3.9 | TAATGTGCATTCTGGCACACTT |
| Edwardsiella tarda EIB202 | ETAE_2298 | -131 | 4.4 | AAGTGTGTTCTGCTGCACAATT |
| Proteus mirabilis HI4320 | PMI0831 | -129 | 4.2 | TTACGTGCTTTAGAGCACGTTT |
|
Position: -213
Score: 4.6 Sequence: TTTTTTGAGGTAAAGCACATTT
Locus tag: SSPA0605
|
||||
| SSPA0605 | -213 | 4.6 | TTTTTTGAGGTAAAGCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: setB | ||||
| Ortholog function: Sugar efflux transporter B | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2170 | -211 | 4.6 | AAGTTTGATGTGCTGCACAATT |
| Salmonella typhimurium LT2 | STM2207 | -213 | 4.6 | TTTTTTGAGGTGAAGCACATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_00612 | -212 | 3.7 | AATTTAGAGATAAAGCACACTT |
| Enterobacter sp. 638 | Ent638_2764 | -208 | 3.9 | AATTTAGAAGTGCAGCACATTT |
|
Position: -177
Score: 4.7 Sequence: AAATGTGCTTTACCTCAAAAAA
Locus tag: SSPA0606
|
||||
| SSPA0606 | -177 | 4.7 | AAATGTGCTTTACCTCAAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fruB | ||||
| Ortholog function: PTS system, fructose-specific IIA/FPr component | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2169 | -178 | 4.3 | AATTGTGCAGCACATCAAACTT |
| Salmonella typhimurium LT2 | STM2206 | -177 | 4.6 | AAATGTGCTTCACCTCAAAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_00613 | -50 | 4.1 | AAGTGTGCTTTATCTCTAAATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02600 | -177 | 3.5 | AAGTGTGCAGTACCTCTAAGTT |
| Enterobacter sp. 638 | Ent638_2763 | -178 | 4.3 | AAATGTGCTGCACTTCTAAATT |
| Erwinia amylovora ATCC 49946 | EAM_2223 | -179 | 4.4 | AAATGTGCTGGCTGTCAAAAAT |
| Yersinia pestis KIM | y2887 | -178 | 4.1 | AAATGTGCGGAATGTCAAAAAT |
| Serratia proteamaculans 568 | Spro_3230 | -177 | 4 | AAGTGTGCGTGAGGTCAAAAAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2729 | -180 | 4.1 | AAATGTGCGTGATGTCAAAATT |
| Edwardsiella tarda EIB202 | ETAE_2303 | -199 | 4.1 | AAATGTGCTGAAGGTCTAAAAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1992 | -180 | 4.7 | AAATGTGAGTAATCTCAAAAAA |
|
Position: -101
Score: 4 Sequence: TTATGTGCGCTACCTCACGCAC
Locus tag: SSPA0618
|
||||
| SSPA0618 | -101 | 4 | TTATGTGCGCTACCTCACGCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: folE | ||||
| Ortholog function: GTP cyclohydrolase I | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2153 | -101 | 3.8 | TTATGTGCGCCGCCTCACGCAC |
| Salmonella typhimurium LT2 | STM2193 | -101 | 4 | TTATGTGCGCTACCTCACGCAC |
| Citrobacter koseri ATCC BAA-895 | CKO_00638 | -98 | 3.8 | TTATGTGCGCCGCCTCACGCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02591 | -84 | 3.5 | TTCTGTGCGCCACCTCACGCAC |
| Enterobacter sp. 638 | Ent638_2753 | -84 | 3.9 | TTATGTGCGCCACCTCACGCAC |
| Serratia proteamaculans 568 | Spro_1560 | -121 | 4.3 | AATCTTGACCGGGTTCACGTTA |
| Proteus mirabilis HI4320 | PMI0639 | -86 | 4.9 | TAATGTGATTCAGCTCATCTAA |
|
Position: -103
Score: 3.7 Sequence: CCCTGTGATGTTTCTCACGTAG
Position: -38
Score: 3.3 Sequence: ATTTGTGAGCATTTTTGAACTC
Locus tag: SSPA0620
|
||||
| SSPA0620 | -103 | 3.7 | CCCTGTGATGTTTCTCACGTAG | |
| -38 | 3.3 | ATTTGTGAGCATTTTTGAACTC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: galS | ||||
| Ortholog function: Mgl repressor and galactose ultrainduction factor GalS, HTH-type transcriptional regulator | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2151 | -146 | 3.5 | GATAACGATCTGGATCACATTC |
| -95 | 3.9 | TGCTGTGACTCGATTCACGAAG | ||
| Salmonella typhimurium LT2 | STM2191 | -154 | 3.5 | GATAACGATCTGGATCACATTC |
| -103 | 3.5 | CCCTGTGATGTTTCTCACGCAG | ||
| -38 | 3.3 | ATTTGTGAGCATTTTTGAACTC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00640 | -157 | 3.5 | GATAACGATCTGGATCACATTC |
| -106 | 3.4 | CCCTGTGACCTTACTCACGTAG | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02589 | -160 | 3.3 | GATAACGATCTCGATCACAATC |
| -109 | 3.4 | CCGTGTGACCTCACTCACGCAG | ||
| -33 | 3.6 | TGACGTGCTGTAATTCTCTTAA | ||
| Enterobacter sp. 638 | Ent638_2751 | -160 | 3.4 | GATAACGATCTGGATCACAATC |
| -109 | 4.1 | CTGTGTGAGCTTCTTCACGTAG | ||
| Erwinia amylovora ATCC 49946 | EAM_2208 | -110 | 3.4 | GGCTGTGAGGTTTCTCACGTAG |
| Serratia proteamaculans 568 | Spro_1562 | -135 | 3.4 | AATTGAGATCTGGCGCAGGTAG |
| -84 | 3.5 | TCCTGTGACGGGATTCACGCAG | ||
|
Position: -121
Score: 4.9 Sequence: TTTTGTGAATTCTTTCACAGAA
Locus tag: SSPA0624
|
||||
| SSPA0624 | -121 | 4.9 | TTTTGTGAATTCTTTCACAGAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yeiT | ||||
| Ortholog function: predicted oxidoreductase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2146 | -112 | 4.8 | ATTTGTGAATCTTTTCACAGTT |
| Salmonella typhimurium LT2 | STM2186 | -201 | 3.5 | ATTTATTATCCCTTTAAAATTG |
| -168 | 4.1 | TATTATGATATAAGGAACAAAT | ||
| -121 | 4.9 | TTTTGTGAATTCTTTCACAGAA | ||
|
Position: -78
Score: 4.8 Sequence: CAATGAGATTTAGATCACATAT
Locus tag: SSPA0627
|
||||
| SSPA0627 | -78 | 4.8 | CAATGAGATTTAGATCACATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cdd | ||||
| Ortholog function: cytidine deaminase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2143 | -128 | 4.3 | ATTTGCGATGCGTCGCGCATTT |
| -78 | 5.1 | TAATGAGATTCAGATCACATAT | ||
| Salmonella typhimurium LT2 | STM2183 | -128 | 4.2 | ATTTGCGATACGTCGCGCATTT |
| -78 | 4.8 | CAATGAGATTTAGATCACATAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00646 | -128 | 4.3 | ATTTGCGATGCGTCGCGCATTT |
| -78 | 4.8 | CAATGAGATTTGGATCACATAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02584 | -78 | 4.4 | GAATGAGATATTCATCACATAT |
| Enterobacter sp. 638 | Ent638_2746 | -127 | 4.2 | ATTTGCGATGCGTCGCGCAATT |
| -77 | 4.9 | TAATGAGAACTGGATCACATAT | ||
| Erwinia amylovora ATCC 49946 | EAM_2202 | -124 | 3.9 | ACTTGCGATAAGTCTCTCATTT |
| -104 | 4.1 | TTTGGTGATGCATTTCATTTAT | ||
| -74 | 4.7 | TAGAGCGATTTAGATCACATAT | ||
| Yersinia pestis KIM | y2657 | -75 | 5 | TAATGAGATATAAATCACAATT |
| Serratia proteamaculans 568 | Spro_1568 | -127 | 4.1 | ACTTGCGATACATCTCGCAATT |
| -77 | 4.5 | TAAAGAGATTTACATCACACTT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2830 | -130 | 4.6 | AATTGAGATACATCTCGCATTT |
| -79 | 4.5 | TAAAGAGATTCCGATCACAATT | ||
| Edwardsiella tarda EIB202 | ETAE_1162 | -76 | 4.9 | AAAAGTGATTATTATCACAAAT |
| Proteus mirabilis HI4320 | PMI0643 | -132 | 4.4 | ATTTGAGATGTATCTCCCAATT |
| -82 | 5.1 | AAATATGATTTTAATCACATAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1547 | -75 | 4.7 | CTATATGATATTTATCACATTA |
|
Position: -68
Score: 4.6 Sequence: TGATGTGATCGGTAGCACGTTT
Locus tag: SSPA0629
|
||||
| SSPA0629 | -68 | 4.6 | TGATGTGATCGGTAGCACGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yohJ | ||||
| Ortholog function: LrgA family protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2141 | -68 | 4.9 | TAATGTGATCGGTAGCACGTTT |
| Salmonella typhimurium LT2 | STM2181 | -68 | 4.6 | TGATGTGATCGGTAGCACGTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_00648 | -68 | 4.6 | TGATGTGATCGGTAGCACGTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02582 | -68 | 5 | TGATGTGATCGGTAGCACATTT |
| Enterobacter sp. 638 | Ent638_2744 | -68 | 4.7 | TGATGTGATCCGTAGCACGTTT |
| Yersinia pestis KIM | y2654 | -32 | 4.7 | TAGTGTGATGGGTAGCACAGAA |
| Serratia proteamaculans 568 | Spro_1570 | -62 | 4.3 | ATTTGTGGCGGAGGTCACAGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2828 | -69 | 4.5 | ATTCGTGATCTGTGGCACGTAA |
| Edwardsiella tarda EIB202 | ETAE_1164 | -68 | 4.9 | TGATGTGATCAGTAGCACATTT |
| Proteus mirabilis HI4320 | PMI0645 | -71 | 5.2 | TATTGTGATCCATAGCACACTT |
|
Position: -42
Score: 4.5 Sequence: AATTGTGACAATTGTCATATTA
Locus tag: SSPA0704
|
||||
| SSPA0704 | -42 | 4.5 | AATTGTGACAATTGTCATATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yegH | ||||
| Ortholog function: putative membrane protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2063 | -43 | 4.6 | AATTGTGACATTTGTCATACAA |
| Salmonella typhimurium LT2 | STM2119 | -42 | 4.5 | AATTGTGACAATTGTCATATTA |
| Citrobacter koseri ATCC BAA-895 | CKO_00719 | -42 | 4.5 | AATTGTGACAACTGTCATATAA |
| Enterobacter sp. 638 | Ent638_2677 | -42 | 4.4 | AAGTGTGACAAATGTCATATAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1559 | -193 | 3.9 | ATTTGTTAATGTGATCACATGT |
|
Position: -328
Score: 3.4 Sequence: ATATGTGCTGGATGGAAAAGAT
Position: -102
Score: 3.9 Sequence: GAGTGCGAGGTTGCTCACAAAA
Locus tag: SSPA0757
|
||||
| SSPA0757 | -328 | 3.4 | ATATGTGCTGGATGGAAAAGAT | |
| -102 | 3.9 | GAGTGCGAGGTTGCTCACAAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sbmC | ||||
| Ortholog function: DNA gyrase inhibitor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2009 | -93 | 3.5 | GAGTGCGAGTCTGCTCGCATAA |
| Salmonella typhimurium LT2 | STM2061 | -102 | 4.1 | GATTGCGAGGTTGCTCACAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_00775 | -219 | 3.5 | GAGTGCGAGTCTGCTCACATAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02467 | -88 | 3.6 | CTCTGTGAATTCGCGCACATAC |
| Enterobacter sp. 638 | Ent638_2577 | -97 | 3.6 | TCGTGCGAGTCTGCTCGCATAA |
| -65 | 3.6 | ATATTTGCTGCACATAAAGAAT | ||
|
Position: -201
Score: 4 Sequence: TGTTTTTACTTCACTCACATAA
Locus tag: SSPA0827
|
||||
| SSPA0827 | -201 | 4 | TGTTTTTACTTCACTCACATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rcsA | ||||
| Ortholog function: Colanic acid capsular biosynthesis activation accesory protein RcsA, co-regulator with RcsB | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1951 | -201 | 4 | TGTTTTAAGCTCACTCACATAT |
| Salmonella typhimurium LT2 | STM1982 | -201 | 4 | TGTTTTTACTTCACTCACATAA |
| Citrobacter koseri ATCC BAA-895 | CKO_00992 | -200 | 4.1 | TGTTTTTACCTTACTCACATAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02421 | -195 | 3.7 | TGTTTTTAATTCGGTCACACTA |
| Enterobacter sp. 638 | Ent638_2542 | -206 | 4.3 | TGTTTTTATGCCCTTCACAATA |
|
Position: -285
Score: 5.9 Sequence: TTATGTGATCTACATCACATAT
Locus tag: SSPA0878
|
||||
| SSPA0878 | -285 | 5.9 | TTATGTGATCTACATCACATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: flhD | ||||
| Ortholog function: DNA-binding transcriptional dual regulator with FlhC | ||||
| Salmonella typhimurium LT2 | STM1925 | -285 | 5.8 | ATATGTGATCTGCATCACATAT |
|
Position: -276
Score: 3.7 Sequence: AATTGTTATTTAATTTAACGTT
Locus tag: SSPA0969
|
||||
| SSPA0969 | -276 | 3.7 | AATTGTTATTTAATTTAACGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: b1821 | ||||
| Ortholog function: hypothetical protein | ||||
| Salmonella typhimurium LT2 | STM1834 | -276 | 3.7 | AATTGTTATTTAATTTAACGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2389 | -267 | 3.8 | TAGTGTTGTTTGCATCATAAAT |
| Proteus mirabilis HI4320 | PMI1608 | -272 | 3.8 | AATTATTATCAATATCATCTTT |
| -237 | 3.9 | TAATATGTTGCCTTTCATAAAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2701 | -281 | 3.9 | TATTGTGCTATCTTTTAAATTG |
| -179 | 3.7 | AAACGTGGTGCGGGTAACCTTA | ||
|
Position: -131
Score: 3.7 Sequence: AATAGTGACGCGCTTCGCAACC
Locus tag: SSPA0985
|
||||
| SSPA0985 | -131 | 3.7 | AATAGTGACGCGCTTCGCAACC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadD | ||||
| Ortholog function: long-chain-fatty-acid--CoA ligase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1805 | -131 | 3.7 | AATAGTGACGCGCTTCGCAACC |
| Salmonella typhimurium LT2 | STM1818 | -131 | 3.7 | AATAGTGACGCGCTTCGCAACC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02322 | -97 | 3.7 | AATAGTGACGCGCTTCGCAACC |
| Erwinia amylovora ATCC 49946 | EAM_1956 | -130 | 3.9 | TTTAGTGATGCGCTTCGCAACC |
| Yersinia pestis KIM | y2236 | -80 | 4.1 | AATAGTGATGTATATCTCAACC |
| Serratia proteamaculans 568 | Spro_2760 | -99 | 3.9 | ATTAGTGACGTACATCGCAACC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2372 | -132 | 3.8 | ATTAGTGATCGTTCTCGCAACC |
| -75 | 3.7 | TAAAATAATGTTAATAACAATA | ||
| Proteus mirabilis HI4320 | PMI1166 | -121 | 4.4 | TTTAGTGATACACTTCGCATCT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2134 | -288 | 3.8 | AAATGCTATCTTAAGCAAAAAA |
| -137 | 4 | ATTAGTGATGTGTATCTCAACC | ||
|
Position: -21
Score: 3.8 Sequence: CTGTGTAATGGAAATCTCACTA
Locus tag: SSPA0997
|
||||
| SSPA0997 | -21 | 3.8 | CTGTGTAATGGAAATCTCACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadR | ||||
| Ortholog function: fatty acid metabolism regulator | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1187 | -21 | 3.9 | CTGTGTTATGGAAATCTCACTA |
| Salmonella typhimurium LT2 | STM1805 | -21 | 3.8 | CTGTGTAATGGAAATCTCACTA |
| Enterobacter sp. 638 | Ent638_2365 | -21 | 3.8 | CTGTGTAATGGAAATCTCACTA |
| Yersinia pestis KIM | y2177 | -113 | 3.8 | CTTTATGACTGCTTTCACCATT |
| Proteus mirabilis HI4320 | PMI1510 | -111 | 4.4 | TTTTATGATGCCATTCACTATT |
| -84 | 3.8 | ATGGTTGAGCTATATCAAAATT | ||
|
Position: -237
Score: 4.9 Sequence: TATGGTGACGTGCTTCACATAT
Locus tag: SSPA0998
|
||||
| SSPA0998 | -237 | 4.9 | TATGGTGACGTGCTTCACATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ycgB | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1188 | -235 | 4.4 | TATGGTGAGCTGGCTCACATCT |
| Salmonella typhimurium LT2 | STM1804.S | -243 | 4.9 | TATGGTGACGTGCTTCACATAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02310 | -174 | 4 | TATGGTGACTTAACTCACAGCA |
| Enterobacter sp. 638 | Ent638_2364 | -236 | 4.2 | TATGGTGACTTACCTCACACCT |
|
Position: -107
Score: 4.6 Sequence: ATATGTGAAGCACGTCACCATA
Locus tag: SSPA0999
|
||||
| SSPA0999 | -107 | 4.6 | ATATGTGAAGCACGTCACCATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dadA | ||||
| Ortholog function: D-amino acid dehydrogenase small subunit | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1189 | -116 | 4.7 | AGATGTGAGCCAGCTCACCATA |
| Salmonella typhimurium LT2 | STM1803 | -107 | 4.6 | ATATGTGAAGCACGTCACCATA |
| Citrobacter koseri ATCC BAA-895 | CKO_01193 | -107 | 4.5 | AGATGTGAGGTGCGTCACCATA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02309 | -106 | 4.1 | TGCTGTGAGTTAAGTCACCATA |
| Enterobacter sp. 638 | Ent638_2363 | -107 | 4.3 | AGGTGTGAGGTAAGTCACCATA |
| Serratia proteamaculans 568 | Spro_2746 | -113 | 4.6 | AATTGTGAATGTTGTCACGTTT |
| Proteus mirabilis HI4320 | PMI1509 | -121 | 4.7 | AAATGTGATTTGACTCTAAAAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2561 | -114 | 5.4 | AATTGTGATCTAAATCATAAAT |
|
Position: -105
Score: 4.4 Sequence: ATTTGTGATCGCACCCGCACTT
Locus tag: SSPA1018
|
||||
| SSPA1018 | -105 | 4.4 | ATTTGTGATCGCACCCGCACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ychH | ||||
| Ortholog function: membrane protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1205 | -105 | 4.5 | AATTGTGATCACGCCCGCACAT |
| Salmonella typhimurium LT2 | STM1782 | -105 | 4.4 | ATTTGTGATCGCACCCGCACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_01260 | -104 | 4.1 | AATTGTGATCGCCCACGCACTC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02241 | -100 | 4.1 | TAATGTGATCGTGGACGCACTC |
| Enterobacter sp. 638 | Ent638_2343 | -119 | 3.7 | TGTTGTGACGAGAGTCATTAAT |
| -101 | 4 | TAATGTGATCATTCACGCAACT | ||
| Erwinia amylovora ATCC 49946 | EAM_1581 | -97 | 3.9 | AAATGTGATCGCTGACTCATCA |
| Yersinia pestis KIM | y2296 | -145 | 3.9 | AGTTGTGATCGCTACCGCAACA |
| Serratia proteamaculans 568 | Spro_1985 | -117 | 4.2 | ATTTGTGATCGCCTACGCAATC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2185 | -275 | 3.6 | TAGCGTGATTATGAGAACGCTA |
| -117 | 3.8 | ATCTGTGATCCCTCCCGCAATC | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2065 | -189 | 4.1 | AGTTGTGATCGTGTCCGCAATG |
|
Position: -242
Score: 4.9 Sequence: AATCTTGATTTAGATCACACAA
Locus tag: SSPA1048
|
||||
| SSPA1048 | -242 | 4.9 | AATCTTGATTTAGATCACACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhE | ||||
| Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1241 | -241 | 5 | AAATTTGATTTGGATCACGTAA |
| Salmonella typhimurium LT2 | STM1749 | -242 | 4.9 | AATCTTGATTTAGATCACACAA |
| Citrobacter koseri ATCC BAA-895 | CKO_01318 | -242 | 4.9 | AAATTTGATCTGGATCACGCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02199 | -237 | 4.7 | ATACTTGATCTAAATCACGTAA |
| Enterobacter sp. 638 | Ent638_2304 | -253 | 4.1 | TAAATTGATTCAGATCATGTTT |
| Erwinia amylovora ATCC 49946 | EAM_1900 | -223 | 3.9 | ATTGATGATCTGCATCATCTTT |
| Yersinia pestis KIM | y2023 | -286 | 5.3 | TTTTGTGATTTAAATCACGAAA |
| Serratia proteamaculans 568 | Spro_2704 | -278 | 5.1 | TTTTATGATTTAAATCACAAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2326 | -315 | 4.5 | AAGTTCGATGTTGATCACAAAA |
| Edwardsiella tarda EIB202 | ETAE_1508 | -265 | 5 | TTTCGTGACCTTAATCACAAAA |
| Proteus mirabilis HI4320 | PMI1486 | -246 | 5.4 | TATTGTGATGTAGATCACTTTA |
| -187 | 3.7 | AAAGGAGATCTTTTTAAAATAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2496 | -237 | 3.7 | TATTTTTATTAGATTAAAAATT |
| -138 | 4.6 | TTATGTGATTAAGATCAATATA | ||
|
Position: -256
Score: 4.8 Sequence: TTGTGTGATCTAAATCAAGATT
Locus tag: SSPA1049
|
||||
| SSPA1049 | -256 | 4.8 | TTGTGTGATCTAAATCAAGATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ychE | ||||
| Ortholog function: putative channel protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1242 | -257 | 5.1 | TTACGTGATCCAAATCAAATTT |
| Salmonella typhimurium LT2 | STM1748 | -256 | 4.8 | TTGTGTGATCTAAATCAAGATT |
| Citrobacter koseri ATCC BAA-895 | CKO_01319 | -167 | 5 | TTGCGTGATCCAGATCAAATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02198 | -261 | 4.8 | TTACGTGATTTAGATCAAGTAT |
| Enterobacter sp. 638 | Ent638_2303 | -256 | 4 | AAACATGATCTGAATCAATTTA |
| Erwinia amylovora ATCC 49946 | EAM_1899 | -158 | 3.8 | AAAGATGATGCAGATCATCAAT |
| Serratia proteamaculans 568 | Spro_2703 | -268 | 5.2 | TTTTGTGATTTAAATCATAAAA |
| Proteus mirabilis HI4320 | PMI1485 | -290 | 5.3 | TAAAGTGATCTACATCACAATA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2495 | -295 | 4.9 | TATATTGATCTTAATCACATAA |
|
Position: -82
Score: 4 Sequence: AAATGTGATCTGTGTTAGATCA
Locus tag: SSPA1064
|
||||
| SSPA1064 | -82 | 4 | AAATGTGATCTGTGTTAGATCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: outer membrane protein W | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1256 | -166 | 4.9 | AAAATTGATTTAAATCACATTA |
| -82 | 3.8 | TAATGTGATCTATGTAGGATCA | ||
| Salmonella typhimurium LT2 | STM1732 | -82 | 4.2 | AAATGTGATCTGTATTAGATCA |
| Citrobacter koseri ATCC BAA-895 | CKO_01333 | -82 | 3.9 | TAATGTGATCTGTATTGGATCA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01248 | -101 | 3.9 | CATTGCGATCGGTAGCAAAAAT |
| -45 | 4 | TAGTGTGATCTAAAACAGATCA | ||
| Enterobacter sp. 638 | Ent638_2283 | -121 | 3.7 | AAAATTAATCTGGATCAACAAA |
| Yersinia pestis KIM | y2044 | -69 | 3.9 | AGATGTGATCTCGATTAGATCA |
| Serratia proteamaculans 568 | Spro_2674 | -135 | 3.8 | TTTTTTGATTCAGATCAATCCT |
| Edwardsiella tarda EIB202 | ETAE_1528 | -161 | 3.9 | CTGATTGATGTCTATCAAATTT |
| Proteus mirabilis HI4320 | PMI1350 | -168 | 4.6 | AAATTTGATGTGGATCAATTAT |
| -85 | 3.8 | AGTTGTGATCGGCATTAGATCA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2478 | -164 | 4.3 | AACTTTGATTTGGATCAAGTTA |
| -39 | 3.8 | TATTTTGATTGACTTTAAATCA | ||
|
Position: -94
Score: 4.5 Sequence: AAATGAGAAGCAGGTCACAAAA
Locus tag: SSPA1238
|
||||
| SSPA1238 | -94 | 4.5 | AAATGAGAAGCAGGTCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sotB | ||||
| Ortholog function: Probable sugar efflux transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1528 | -94 | 4.9 | AAACGCGATCCAGATCACAAAT |
| Salmonella typhimurium LT2 | STM1522 | -94 | 4.5 | AAATGAGAAGCAGGTCACAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_01548 | -94 | 4.8 | TAATGAGACATACATCACAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01628 | -94 | 4.8 | AAATGAGACGCAGATCACAAAA |
| Enterobacter sp. 638 | Ent638_2000 | -95 | 4.9 | TTTTGAGATCTGCGTCACATAA |
|
Position: -65
Score: 3.8 Sequence: AGTATTGAAGTGTTTCACCATA
Locus tag: SSPA1270
|
||||
| SSPA1270 | -65 | 3.8 | AGTATTGAAGTGTTTCACCATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mlc | ||||
| Ortholog function: ROK family transcriptional regulatory protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1594 | -108 | 4.1 | AAATGTGCTGTTAATCACATGC |
| Salmonella typhimurium LT2 | STM1488 | -65 | 3.8 | AGTATTGAAGTGTTTCACCATA |
| Citrobacter koseri ATCC BAA-895 | CKO_01593 | -107 | 3.6 | AAaTGTGcagTAaATCACAcgg |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01574 | -104 | 3.8 | AAATGTGCGGTAAATCACAAGG |
| Enterobacter sp. 638 | Ent638_1919 | -107 | 3.8 | AAATGTGCGGTAAATCACAAGG |
| Erwinia amylovora ATCC 49946 | EAM_1710 | -143 | 4.9 | TTATGTGCTGTAAATCACATTC |
| Yersinia pestis KIM | y2110 | -146 | 4.8 | TTATGTGCAGCAAATCACATAA |
| Serratia proteamaculans 568 | Spro_2283 | -111 | 4.8 | ATTTGTGCAGCAAATCACATAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2258 | -226 | 4.4 | ATATGCGCGCTAAATCACATAA |
| Edwardsiella tarda EIB202 | ETAE_1713 | -113 | 4.8 | ATTTGTGCACTTAATCACATAA |
| Proteus mirabilis HI4320 | PMI1292 | -126 | 4.7 | ATATGTGCTTTCCATCACGATT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2226 | -119 | 4.8 | TTTCGTGCTGAATATCACATAT |
|
Position: -93
Score: 4 Sequence: TTATCTGATTTTACTCCCACTT
Position: -9
Score: 3.5 Sequence: GAGTGTGATATGCATAAAACCA
Locus tag: SSPA1273
|
||||
| SSPA1273 | -93 | 4 | TTATCTGATTTTACTCCCACTT | |
| -9 | 3.5 | GAGTGTGATATGCATAAAACCA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ydgD | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1598 | -93 | 4 | TTATCTGATTTTACTCCCACTT |
| Salmonella typhimurium LT2 | STM1484 | -93 | 4 | TTATCTGATTTTACTCCCACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_01604 | -95 | 4 | TTATCTGATTTTACTCCCACTT |
| Enterobacter sp. 638 | Ent638_1914 | -53 | 4.1 | TATTTTAATAGGGTTCACTTTT |
| Yersinia pestis KIM | y2013 | -160 | 3.6 | TTTTTTTATTTATAGCACGAAC |
|
Position: -56
Score: 3.6 Sequence: TTGTGTAATACTTGTAACGCTA
Locus tag: SSPA1372
|
||||
| SSPA1372 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lpp | ||||
| Ortholog function: major outer membrane lipoprotein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1677 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Salmonella typhimurium LT2 | STM1377 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Citrobacter koseri ATCC BAA-895 | CKO_01710 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02134 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Enterobacter sp. 638 | Ent638_1767 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Erwinia amylovora ATCC 49946 | EAM_1656 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Serratia proteamaculans 568 | Spro_2186 | -55 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1866 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Edwardsiella tarda EIB202 | ETAE_1852 | -55 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Proteus mirabilis HI4320 | PMI1409 | -200 | 4.4 | TTTTGTGAAATAACACGCATTT |
|
Position: -106
Score: 4.3 Sequence: AGGTGTGACACGCCTCGCACTT
Position: -64
Score: 4 Sequence: TATCGTGATGCCCATCACTTCC
Locus tag: SSPA1388
|
||||
| SSPA1388 | -106 | 4.3 | AGGTGTGACACGCCTCGCACTT | |
| -64 | 4 | TATCGTGATGCCCATCACTTCC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aroH | ||||
| Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1704 | -106 | 4.3 | AGGTGTGACACACCTCGCACTT |
| -64 | 4 | TATCGTGATGCGCATCACTTCC | ||
| Salmonella typhimurium LT2 | STM1347 | -106 | 4.3 | AGGTGTGACACGCCTCGCACTT |
| -64 | 4 | TATCGTGATGCCCATCACTTCC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_01728 | -115 | 4.3 | AGGTGTGAAACGCCTCGCATTT |
| -64 | 4.3 | TATTGTGATGCCCATCACTTCC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02162 | -63 | 4 | TATCGTGATGCGCATCACTTCC |
| Enterobacter sp. 638 | Ent638_1743 | -126 | 3.6 | AGTTATGATCGCTTTCACTCTC |
| -62 | 3.6 | TAAGGTGATGCCCATCACTTCC | ||
| Yersinia pestis KIM | y1928 | -64 | 4.3 | TATTGTGATCGCCATCACTTCC |
| Serratia proteamaculans 568 | Spro_2172 | -135 | 3.9 | TTTTGTGCTTTTTTTAGCGATT |
| -64 | 4.3 | TATTGTGATCGCCATCACTTCC | ||
| Edwardsiella tarda EIB202 | ETAE_1792 | -63 | 4 | TATCGTGATCCCCATCACTTCC |
| Proteus mirabilis HI4320 | PMI1423 | -55 | 3.9 | TATTGTGATCTTAATCACTGGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2630 | -62 | 3.8 | TATTGTAATTTCCATTATCTAT |
|
Position: -91
Score: 3.9 Sequence: ATATAAGAGCCAGCTCACAGTT
Locus tag: SSPA1415
|
||||
| SSPA1415 | -91 | 3.9 | ATATAAGAGCCAGCTCACAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tcyP | ||||
| Ortholog function: L-cystine uptake protein TcyP | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1729 | -90 | 3.9 | ATATAAGAGCCAGCTCACAGTT |
| Salmonella typhimurium LT2 | STM1320 | -91 | 3.9 | ATATAAGAGCCAGCTCACAGTT |
| Citrobacter koseri ATCC BAA-895 | CKO_01755 | -90 | 3.7 | ATATAAGAGGTCGGTCACAGTT |
| Yersinia pestis KIM | y1878 | -166 | 3.6 | TGATTTGATTTAATACAAATCA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2410 | -176 | 3.7 | TGACGTTATCTGCTGCACCCAT |
|
Position: -250
Score: 3.9 Sequence: TTTTGTGCCTGCCATAACCTTA
Position: -203
Score: 3.9 Sequence: AAATGTGAGGGGGGTCATAACG
Locus tag: SSPA1423
|
||||
| SSPA1423 | -250 | 3.9 | TTTTGTGCCTGCCATAACCTTA | |
| -203 | 3.9 | AAATGTGAGGGGGGTCATAACG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: chbB | ||||
| Ortholog function: N,N'-diacetylchitobiose-specific PTS system , EIIB component | ||||
| Salmonella typhimurium LT2 | STM1312 | -250 | 3.9 | TTTTGTGCCTGCCATAACCTTA |
| -203 | 3.9 | AAATGTGAGGGGGGTCATAACG | ||
|
Position: -107
Score: 3.6 Sequence: TTTCTTGCTTACCGTCACATTG
Position: -55
Score: 3.6 Sequence: TATTCTGATAAAACGCAAATAC
Locus tag: SSPA1436
|
||||
| SSPA1436 | -107 | 3.6 | TTTCTTGCTTACCGTCACATTG | |
| -55 | 3.6 | TATTCTGATAAAACGCAAATAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gdhA | ||||
| Ortholog function: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1761 | -106 | 3.5 | TTTCTTGCTTACCGTCACATTC |
| Salmonella typhimurium LT2 | STM1299 | -107 | 3.6 | TTTCTTGCTTACCGTCACATTG |
| -55 | 3.6 | TATTCTGATAAAACGCAAATAC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_01789 | -107 | 3.4 | TTTCTTGCTTACCGTCACACTG |
| Enterobacter sp. 638 | Ent638_1685 | -110 | 3.3 | AATTTTCACTTGCCTCGCAAAG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0051 | -234 | 3.6 | TTTTGTTATATAACAAAAACTT |
| Proteus mirabilis HI4320 | PMI3008 | -195 | 3.4 | AATCCTGATTTTATTAGCCTTT |
| -88 | 3.5 | AAACAATATCAACCTCACATAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0122 | -92 | 3.5 | AAACACAACTTACCTCACATTT |
|
Position: -122
Score: 4.7 Sequence: TAATGTGACATCAGTCACGATT
Locus tag: SSPA1444
|
||||
| SSPA1444 | -122 | 4.7 | TAATGTGACATCAGTCACGATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: msrB | ||||
| Ortholog function: methionine sulfoxide reductase B | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1778 | -137 | 5.2 | AAATGTGATTTTCATCACGATT |
| Salmonella typhimurium LT2 | STM1291 | -107 | 4.7 | TAATGTGACATCAGTCACGATT |
| Citrobacter koseri ATCC BAA-895 | CKO_01799 | -107 | 4.9 | AAACGTGATTCCGATCACGATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01198 | -135 | 5.1 | AAACGTGATTTAAGTCACAATT |
| Enterobacter sp. 638 | Ent638_1676 | -137 | 5.2 | ATATGTGAGAAAGATCACAATT |
| Erwinia amylovora ATCC 49946 | EAM_1930 | -137 | 5.2 | AATGGTGATCTGCATCACAATT |
| Yersinia pestis KIM | y2164 | -85 | 5.1 | ATTTGCGATTTTTATCACATTT |
| Serratia proteamaculans 568 | Spro_2727 | -143 | 5.7 | ATATGTGATCGGTATCACATAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2343 | -135 | 5.6 | TTATGTGATACACATCACAATT |
| Edwardsiella tarda EIB202 | ETAE_1484 | -91 | 4.9 | GTTTGTGATGCTCATCACAAAA |
| Proteus mirabilis HI4320 | PMI1503 | -137 | 5.3 | TTATGTGAAATGTATCACATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2557 | -267 | 4.6 | ATATGCGAGTCACATCACAATA |
|
Position: -226
Score: 4.8 Sequence: AATCGTGACTGATGTCACATTA
Locus tag: SSPA1445
|
||||
| SSPA1445 | -226 | 4.8 | AATCGTGACTGATGTCACATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gapA | ||||
| Ortholog function: glyceraldehyde-3-phosphate dehydrogenase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1779 | -226 | 5.3 | AATCGTGATGAAAATCACATTT |
| Salmonella typhimurium LT2 | STM1290 | -226 | 4.8 | AATCGTGACTGATGTCACATTA |
| Citrobacter koseri ATCC BAA-895 | CKO_01800 | -226 | 5 | AATCGTGATCGGAATCACGTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01197 | -225 | 5.2 | AATTGTGACTTAAATCACGTTT |
| Enterobacter sp. 638 | Ent638_1675 | -225 | 5.7 | AATTGTGATCTTTCTCACATAT |
| Erwinia amylovora ATCC 49946 | EAM_1931 | -215 | 5.4 | AATTGTGATGCAGATCACCATT |
| Yersinia pestis KIM | y2165 | -218 | 5.1 | AAATGTGATAAAAATCGCAAAT |
| Serratia proteamaculans 568 | Spro_2728 | -227 | 5.6 | ATATGTGATACCGATCACATAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2344 | -235 | 5.8 | AATTGTGATGTGTATCACATAA |
| Edwardsiella tarda EIB202 | ETAE_1483 | -227 | 5.1 | TTTTGTGATGAGCATCACAAAC |
| Proteus mirabilis HI4320 | PMI1504 | -226 | 5.6 | AAATGTGATACATTTCACATAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2558 | -224 | 5.4 | TATTGTGATGTGACTCGCATAT |
|
Position: -73
Score: 3.6 Sequence: AAAAGTGACCTGACGCAATATT
Locus tag: SSPA1508
|
||||
| SSPA1508 | -73 | 3.6 | AAAAGTGACCTGACGCAATATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pepT | ||||
| Ortholog function: peptidase T | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1127 | -73 | 3.6 | AAAAGTGACCTGACGCAATATT |
| Salmonella typhimurium LT2 | STM1227 | -73 | 3.6 | AAAAGTGACCTGACGCAATATT |
| Citrobacter koseri ATCC BAA-895 | CKO_01926 | -73 | 3.6 | AAAAGTGACCTGACGCAATATT |
| Enterobacter sp. 638 | Ent638_1640 | -31 | 3.6 | AAAAGTGACCTGACGCAATATT |
| Yersinia pestis KIM | y1791 | -27 | 3.7 | ATATTTGATCATGATCACTTCC |
| Serratia proteamaculans 568 | Spro_2009 | -188 | 4.1 | CGTCGTGAAGAAGATCACACAT |
|
Position: -88
Score: 4.7 Sequence: ACGTGTGATGTAGATCACATCT
Locus tag: SSPA1522
|
||||
| SSPA1522 | -88 | 4.7 | ACGTGTGATGTAGATCACATCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ycfR | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1112 | -114 | 3.7 | ATTAATGATTGTTATAAAAAAT |
| -87 | 4.8 | GTATGTGATCCAGATCACATCT | ||
| Salmonella typhimurium LT2 | STM1214 | -88 | 4.7 | ACGTGTGATGTAGATCACATCT |
| Citrobacter koseri ATCC BAA-895 | CKO_01942 | -113 | 3.8 | TATAATGATCGTTATAAAAAAA |
| -86 | 4.5 | ACGTGTGACCTGGATCACATCT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01110 | -95 | 4.9 | ACGTGTGACATAGATCACATTA |
| Enterobacter sp. 638 | Ent638_1627 | -91 | 4.7 | ACGTGTGATGCAGATCACATCT |
| Serratia proteamaculans 568 | Spro_4435 | -116 | 3.7 | TTATTTGATAAAGATTATCAAA |
|
Position: -175
Score: 4.7 Sequence: AGATGTGATCTACATCACACGT
Locus tag: SSPA1523
|
||||
| SSPA1523 | -175 | 4.7 | AGATGTGATCTACATCACACGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ycfQ | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1111 | -175 | 5.3 | AGATGTGATCTGGATCACATAC |
| Salmonella typhimurium LT2 | STM1213 | -175 | 4.7 | AGATGTGATCTACATCACACGT |
| Citrobacter koseri ATCC BAA-895 | CKO_01943 | -227 | 4.4 | AGATGTGATCCAGGTCACACGT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01109 | -227 | 4.8 | TAATGTGATCTATGTCACACGT |
| Enterobacter sp. 638 | Ent638_1626 | -174 | 4.6 | AGATGTGATCTGCATCACACGT |
|
Position: -211
Score: 4.1 Sequence: AAACTTGATGCACATCAATTTT
Locus tag: SSPA1525
|
||||
| SSPA1525 | -211 | 4.1 | AAACTTGATGCACATCAATTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ndh | ||||
| Ortholog function: NADH dehydrogenase (EC 1.6.99.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1109 | -154 | 3.9 | AAACTTGATTAACATCAATTTT |
| Salmonella typhimurium LT2 | STM1211 | -154 | 4.1 | AAACTTGATGCACATCAATTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01106 | -152 | 4.1 | AAACTTGATGCACATCAATTTT |
| Enterobacter sp. 638 | Ent638_1624 | -153 | 4 | AAACTTGATTCATATCAATTTT |
| Erwinia amylovora ATCC 49946 | EAM_1473 | -55 | 3.7 | TAAGGTTATTTTATTAACCTTT |
| Yersinia pestis KIM | y1777 | -152 | 3.8 | AAAGTTGATATATATCAATTTT |
| Serratia proteamaculans 568 | Spro_1926 | -153 | 4.3 | AAGTTTGATGTACATCAATTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1815 | -153 | 4 | TAAATTGATATATATCAATTTT |
| Edwardsiella tarda EIB202 | ETAE_2070 | -166 | 4.3 | TTATTTGATTTGAATCAATTTT |
| Proteus mirabilis HI4320 | PMI0875 | -157 | 4.6 | TTTTTTGATATAAATCAACTTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2821 | -154 | 3.8 | GAATTTGATGTTGTTCAATTTT |
|
Position: -155
Score: 4.4 Sequence: AAACGTGATAGCCGTCAAACAA
Locus tag: SSPA1532
|
||||
| SSPA1532 | -155 | 4.4 | AAACGTGATAGCCGTCAAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ptsG | ||||
| Ortholog function: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1101 | -154 | 4.4 | AAACGTGATAGCCGTCAAACAA |
| Salmonella typhimurium LT2 | STM1203 | -155 | 4.4 | AAACGTGATAGCCGTCAAACAA |
| Citrobacter koseri ATCC BAA-895 | CKO_01957 | -229 | 4.4 | AAACGTGATAGCCGTCAAACAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01099 | -155 | 4.4 | AAACGTGATAGCCGTCAAACAA |
| Enterobacter sp. 638 | Ent638_1616 | -155 | 4.4 | AAACGTGATAGCCGTCAAACAA |
| Erwinia amylovora ATCC 49946 | EAM_1466 | -162 | 4.6 | AAACGTGATAGCCATCAAACAA |
| Yersinia pestis KIM | y1767 | -166 | 4.4 | AAACGTGACGGCAATCAAACAT |
| Serratia proteamaculans 568 | Spro_1914 | -164 | 4.4 | AAACGTGACTGTCATCAAACAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1805 | -162 | 4.6 | AAACGTGATAGCAATCAAACAT |
| Proteus mirabilis HI4320 | PMI2292 | -156 | 4.5 | AAACGTGACAGCTATCATATAT |
|
Position: -202
Score: 4.1 Sequence: TTTTGTTACAAGTTTAACACTT
Locus tag: SSPA1590
|
||||
| SSPA1590 | -202 | 4.1 | TTTTGTTACAAGTTTAACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: csgD | ||||
| Ortholog function: DNA-binding transcriptional activator in two-component regulatory system | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1040 | -201 | 3.9 | TTTAGTTACATGTTTAACACTT |
| -134 | 3.3 | TAGTTTTATATTTTACCCATTT | ||
| Salmonella typhimurium LT2 | STM1142 | -202 | 3.4 | TTTGGTTACAAGTTTAACACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02029 | -207 | 4.1 | TTTTGTTACAAGTTTAACACTT |
|
Position: -4
Score: 4.2 Sequence: AAATGTGTGCGCGATCTCATTA
Locus tag: SSPA1593
|
||||
| SSPA1593 | -4 | 4.2 | AAATGTGTGCGCGATCTCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ycdZ | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1036 | -52 | 4 | AAATGTGTGCTCGATCTCATTC |
| -50 | 3.7 | ATGTGTGCTCGATCTCATTCAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02033 | -40 | 3.9 | AAATGTGTGCGTGATCTCATTC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01059 | -52 | 4.1 | TACTGTGTTTTAGATCGCATTC |
| Serratia proteamaculans 568 | Spro_3290 | -125 | 4.2 | TTTTGTGACAAATTCCACATCT |
| -96 | 3.6 | TATCTTGTTTCTCATTACATAT | ||
| -73 | 4.6 | TTATGTGAAATACATCACATGA | ||
| Edwardsiella tarda EIB202 | ETAE_2360 | -124 | 4.3 | AAGTGTGATTGATGTCACTTTG |
| -72 | 3.6 | CGGTGTGATGTCCATCAATGAA | ||
| Proteus mirabilis HI4320 | PMI3124 | -240 | 3.7 | ATTAATAATATATATCAAACAA |
|
Position: -321
Score: 4.2 Sequence: ATTAGTGATAGCATTCGAATAA
Position: -287
Score: 4.7 Sequence: TTATGTGATGCATTTCATACTG
Locus tag: SSPA1600
|
||||
| SSPA1600 | -321 | 4.2 | ATTAGTGATAGCATTCGAATAA | |
| -287 | 4.7 | TTATGTGATGCATTTCATACTG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nanE | ||||
| Ortholog function: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) | ||||
| Salmonella typhimurium LT2 | STM3337 | -113 | 4.4 | TTTAGTGAAGCAGATCGCACTA |
| Citrobacter koseri ATCC BAA-895 | CKO_04626 | -116 | 4.2 | TTTAGTGAAGTAGATCGCACTC |
|
Position: -204
Score: 3.6 Sequence: AAATGTGAGAGAGTGCAACCTG
Locus tag: SSPA1604
|
||||
| SSPA1604 | -204 | 3.6 | AAATGTGAGAGAGTGCAACCTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: putP | ||||
| Ortholog function: Proline/sodium symporter PutP (TC 2.A.21.2.1) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1015 | -207 | 3.6 | AAATGTGAGAGAGTGCAACCTG |
| Salmonella typhimurium LT2 | STM1125 | -204 | 3.6 | AAATGTGAGAGAGTGCAACCTG |
| Citrobacter koseri ATCC BAA-895 | CKO_02041 | -80 | 3.6 | AAATGTGAGAGAGTGCAACCTG |
| Enterobacter sp. 638 | Ent638_1542 | -249 | 3.7 | TTTTATGCGGCACTTAACACTT |
| Serratia proteamaculans 568 | Spro_2930 | -211 | 3.9 | AAATGTGACGCAGGGTAAACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4218 | -130 | 3.7 | TTGTGCAACCTTGTTAACAAAT |
| Proteus mirabilis HI4320 | PMI1615 | -220 | 3.8 | TAGTGTGAAGTTACATACAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1958 | -243 | 4.4 | AAATGTGATTCAGTAAACGTTT |
|
Position: -174
Score: 5.2 Sequence: ATTTGTGATGTGATTAACAATA
Locus tag: SSPA1626
|
||||
| SSPA1626 | -174 | 5.2 | ATTTGTGATGTGATTAACAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hpaR | ||||
| Ortholog function: 4-hydroxyphenylacetate catabolism | ||||
| Salmonella typhimurium LT2 | STM1100 | -174 | 5.2 | ATTTGTGATGTGATTAACAATA |
|
Position: -188
Score: 4.3 Sequence: ATGTCTGACGGAGTTCACACTT
Locus tag: SSPA1653
|
||||
| SSPA1653 | -188 | 4.3 | ATGTCTGACGGAGTTCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompA | ||||
| Ortholog function: outer membrane protein A | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0957 | -188 | 4 | ATGCCTGACGGAGTTCACACTT |
| Salmonella typhimurium LT2 | STM1070 | -188 | 4.3 | ATGTCTGACGGAGTTCACACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02111 | -164 | 4 | ATGCCTGACGGAGTTCACACTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00986 | -185 | 3.9 | ATGCCTGACAGAGTTCACACTT |
| Enterobacter sp. 638 | Ent638_1469 | -189 | 4 | ATGCCTGACGGAGTTCACACTT |
| Serratia proteamaculans 568 | Spro_1754 | -195 | 3.8 | TTTTTAGAGCTTTATCACATCA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1751 | -200 | 3.9 | TCTTATGACACAAATCACATCA |
| Edwardsiella tarda EIB202 | ETAE_1267 | -196 | 3.7 | TTTGGTGAGCATAATCACATCG |
|
Position: -245
Score: 4.5 Sequence: AAGTTTGACGTTGTTCACAAAG
Locus tag: SSPA1672
|
||||
| SSPA1672 | -245 | 4.5 | AAGTTTGACGTTGTTCACAAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompF | ||||
| Ortholog function: Outer membrane protein F precursor | ||||
| Salmonella typhimurium LT2 | STM0999 | -245 | 4.5 | AAGTTTGACGTTGTTCACAAAG |
| Enterobacter sp. 638 | Ent638_1448 | -245 | 4.6 | AAATTTGAGGTGGTTCACAAAG |
|
Position: -178
Score: 4 Sequence: TTGTGTGACGAATGCCGCATTT
Locus tag: SSPA1693
|
||||
| SSPA1693 | -178 | 4 | TTGTGTGACGAATGCCGCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: serC | ||||
| Ortholog function: Phosphoserine aminotransferase (EC 2.6.1.52) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0907 | -155 | 4.8 | TTGTGTGATGCAAGCCACATTT |
| Salmonella typhimurium LT2 | STM0977 | -142 | 4.2 | TTGTGTGACGCATGCCGCATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02165 | -171 | 4.6 | TTGTGTGACGTAGCGCGCATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00935 | -145 | 3.7 | TTGTGTGACGGCGGCCGCGTTT |
| Enterobacter sp. 638 | Ent638_1427 | -119 | 4.4 | TTGTGTGACGGTGGACACATTT |
| Yersinia pestis KIM | y2784 | -39 | 3.3 | TATAACGATGGCAATCTCAGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2594 | -78 | 3.5 | AAGTATGACGGGTATAAAAATG |
| Proteus mirabilis HI4320 | PMI0711 | -119 | 3.5 | TATTTTTGTGTGCTACACATAA |
|
Position: -78
Score: 4.4 Sequence: AGATATGATCTATATCAAATTC
Locus tag: SSPA1696
|
||||
| SSPA1696 | -78 | 4.4 | AGATATGATCTATATCAAATTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: focA | ||||
| Ortholog function: formate transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0904 | -156 | 3.6 | TATTTTTATTTGGATAATCAAA |
| -78 | 3.8 | AGATATGATCTATATCAATTTC | ||
| Salmonella typhimurium LT2 | STM0974 | -78 | 4.4 | AGATATGATCTATATCAAATTC |
| Citrobacter koseri ATCC BAA-895 | CKO_02167 | -198 | 3.6 | TATTTTTATTTGGATAATCAAA |
| -120 | 4.4 | AGATATGATCTATATCAAATTC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00932 | -121 | 3.8 | AGATATGATCTATATCAATTTC |
| Enterobacter sp. 638 | Ent638_1424 | -78 | 3.8 | AGATATGATCTATATCAATTTC |
| Yersinia pestis KIM | y2789 | -84 | 4 | CAATATGATCCATATCAATTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2596 | -79 | 4.5 | CAATATGATCCACATCAAATTT |
| Proteus mirabilis HI4320 | PMI0706 | -188 | 4 | TTTTTTGATAAAATTTAAAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1614 | -88 | 4.7 | AATTATGATCTATATCAAATTC |
|
Position: -29
Score: 4.2 Sequence: AAATTTGAACTTCCTCACGGTT
Locus tag: SSPA1703
|
||||
| SSPA1703 | -29 | 4.2 | AAATTTGAACTTCCTCACGGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ycaD | ||||
| Ortholog function: Hypothetical MFS-type transporter protein ycaD | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0898 | -29 | 4.2 | AAATTTGAACTTCCTCACGGTT |
| Salmonella typhimurium LT2 | STM0968 | -29 | 4.2 | AAATTTGAACTTCCTCACGGTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02171 | -29 | 4.2 | AAATTTGAACTTCCTCACGGTT |
|
Position: -164
Score: 4 Sequence: AAATTTGAAGCAGTTAACGCTA
Position: -135
Score: 3.6 Sequence: GAATGTGACAGATGTCGCGGAT
Position: -104
Score: 3.6 Sequence: AGATGTTAGTTATCTATCAATT
Locus tag: SSPA1725
|
||||
| SSPA1725 | -164 | 4 | AAATTTGAAGCAGTTAACGCTA | |
| -135 | 3.6 | GAATGTGACAGATGTCGCGGAT | ||
| -104 | 3.6 | AGATGTTAGTTATCTATCAATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: clpS | ||||
| Ortholog function: ATP-dependent Clp protease adaptor protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0881 | -164 | 4 | AAATTTGAAGCAGTTAACGCTA |
| Salmonella typhimurium LT2 | STM0944 | -164 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -104 | 3.6 | AGATGTTAGTTATCTATCAATT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02199 | -164 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -135 | 4.2 | TAATGTGACAGATGTCGCGGAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00914 | -167 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -77 | 4.3 | ATTTGTGATGAGCATAACCTCT | ||
| Enterobacter sp. 638 | Ent638_1398 | -161 | 3.9 | ATTTTTGAAGCAGTTAACGCTA |
| -132 | 3.8 | GAATGTGACAGATATCGCGGAT | ||
| Erwinia amylovora ATCC 49946 | EAM_1320 | -161 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -132 | 4.5 | TTTTGTGATAGAGGTCGCTATT | ||
| Serratia proteamaculans 568 | Spro_1673 | -176 | 3.6 | AAGTTTGAAGCAGGTAACGCTA |
| Edwardsiella tarda EIB202 | ETAE_2208 | -164 | 3.8 | AAGTTTGAGGCAGTTAACGCAA |
| -144 | 3.6 | AATTGTGCGGCAGTGCGCTTTT | ||
| Proteus mirabilis HI4320 | PMI0689 | -268 | 3.7 | TGTCTTTATTTACTTAACATTA |
| -148 | 4.1 | AACTTTGATGTAGCTAACGCTT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1593 | -170 | 4.3 | AAGTTTGATATAGATAACGATA |
|
Position: -181
Score: 4 Sequence: TAGCGTTAACTGCTTCAAATTT
Locus tag: SSPA1726
|
||||
| SSPA1726 | -181 | 4 | TAGCGTTAACTGCTTCAAATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cspD | ||||
| Ortholog function: cold shock-like protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0880 | -180 | 4 | TAGCGTTAACTGCTTCAAATTT |
| Salmonella typhimurium LT2 | STM0943 | -181 | 4 | TAGCGTTAACTGCTTCAAATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02200 | -210 | 3.9 | ATCCGCGACATCTGTCACATTA |
| -181 | 4 | TAGCGTTAACTGCTTCAAATTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00913 | -270 | 4.2 | AGAGGTTATGCTCATCACAAAT |
| -180 | 4 | TAGCGTTAACTGCTTCAAATTT | ||
| Enterobacter sp. 638 | Ent638_1397 | -209 | 3.8 | ATCCGCGATATCTGTCACATTC |
| -180 | 3.9 | TAGCGTTAACTGCTTCAAAAAT | ||
| Serratia proteamaculans 568 | Spro_1672 | -205 | 4 | TAGCGTTACCTGCTTCAAACTT |
| -49 | 3.9 | TTCAGTTATTCATCTCACCTAA | ||
| Proteus mirabilis HI4320 | PMI0688 | -163 | 3.8 | AAGCGTTAGCTACATCAAAGTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1592 | -194 | 4.6 | TATCGTTATCTATATCAAACTT |
|
Position: -149
Score: 4 Sequence: AGATGTGTACGAAATCACGTTT
Locus tag: SSPA1785
|
||||
| SSPA1785 | -149 | 4 | AGATGTGTACGAAATCACGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybiT | ||||
| Ortholog function: ABC transporter ATP-binding protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0820 | -124 | 4.4 | AGATGTGTACGAAATCACATTT |
| Salmonella typhimurium LT2 | STM0838 | -124 | 4 | AGATGTGTACGAAATCACGTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02298 | -148 | 4.4 | AGATGTGTACGAAATCACATTT |
| Enterobacter sp. 638 | Ent638_1311 | -125 | 4.4 | AGATGTGTACGAAATCACATTT |
| Yersinia pestis KIM | y2677 | -295 | 3.9 | TATCGTTATACCCGTCATACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3010 | -41 | 4 | TAATGCGCGCCAAATCACATTC |
| Edwardsiella tarda EIB202 | ETAE_2518 | -40 | 4.8 | TAATGTGAACAAAATCACGTTA |
|
Position: -116
Score: 4.4 Sequence: AAACGTGATTTCGTACACATCT
Locus tag: SSPA1786
|
||||
| SSPA1786 | -116 | 4.4 | AAACGTGATTTCGTACACATCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybiS | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0819 | -116 | 4.7 | AAATGTGATTTCGTACACATCT |
| Salmonella typhimurium LT2 | STM0837 | -116 | 4.4 | AAACGTGATTTCGTACACATCT |
| Citrobacter koseri ATCC BAA-895 | CKO_02299 | -202 | 3.8 | ATATGTGACAAACCGCTTATTA |
| -116 | 4.7 | AAATGTGATTTCGTACACATCT | ||
| Enterobacter sp. 638 | Ent638_1310 | -119 | 4.7 | AAATGTGATTTCGTACACATCT |
|
Position: -124
Score: 4.7 Sequence: TTTTGTGATGCGGCGCATAAAT
Locus tag: SSPA1803
|
||||
| SSPA1803 | -124 | 4.7 | TTTTGTGATGCGGCGCATAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybiH | ||||
| Ortholog function: putative transcriptional regulator | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0796 | -123 | 4.5 | TTTTGTGACGCAGCGCATAAAT |
| Salmonella typhimurium LT2 | STM0819 | -124 | 4.7 | TTTTGTGATGCGGCGCATAAAT |
| Citrobacter koseri ATCC BAA-895 | CKO_02331 | -124 | 4.5 | TTTTGTGACATACCGCATAAAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00824 | -224 | 3.6 | AAATGAAACGGTATTCAAAAAA |
| -118 | 4.7 | AATTGTTAAGCCCATCACAAAT | ||
| Enterobacter sp. 638 | Ent638_1287 | -126 | 4.4 | TTTTGTGACACGGCGCATAAAA |
| Serratia proteamaculans 568 | Spro_1330 | -146 | 4.6 | TTAAGTGACGCAGAGCACAATA |
| Proteus mirabilis HI4320 | PMI0619 | -160 | 3.6 | AATTTTTAAATAAATCATGTTT |
|
Position: -98
Score: 3.8 Sequence: TAGTGTAGTCGTCGTCACAAAA
Locus tag: SSPA1808
|
||||
| SSPA1808 | -98 | 3.8 | TAGTGTAGTCGTCGTCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybhQ | ||||
| Ortholog function: putative inner membrane protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0791 | -98 | 3.9 | TAGTGTAGTCGGCGTCACAAAA |
| Salmonella typhimurium LT2 | STM0814 | -98 | 3.8 | TAGTGTAGTCGTCGTCACAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_02336 | -153 | 3.8 | TAGTGTAGTCGTCGTCACAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00819 | -97 | 3.8 | TAGTGTAGTAGACGTCACAAAA |
| Enterobacter sp. 638 | Ent638_1282 | -98 | 3.9 | AAGTGTAGTCGGCGTCACAAAA |
|
Position: -56
Score: 4 Sequence: TTTTGTGACGACGACTACACTA
Locus tag: SSPA1809
|
||||
| SSPA1809 | -56 | 4 | TTTTGTGACGACGACTACACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybhP | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0790 | -56 | 4.2 | TTTTGTGACGCCGACTACACTA |
| Salmonella typhimurium LT2 | STM0813 | -56 | 4 | TTTTGTGACGACGACTACACTA |
| Citrobacter koseri ATCC BAA-895 | CKO_02337 | -56 | 4 | TTTTGTGACGACGACTACACTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00818 | -56 | 4.2 | TTTTGTGACGTCTACTACACTA |
| Enterobacter sp. 638 | Ent638_1281 | -57 | 4.2 | TTTTGTGACGCCGACTACACTT |
|
Position: -78
Score: 3.7 Sequence: TAATTTATTACATGTCACACTT
Locus tag: SSPA1843
|
||||
| SSPA1843 | -78 | 3.7 | TAATTTATTACATGTCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: galE2 | ||||
| Ortholog function: UDP-galactose-4-epimerase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0759 | -78 | 3.8 | TAATTTATTCCATGTCACACTT |
| Salmonella typhimurium LT2 | STM0776 | -78 | 3.7 | TAATTTATTACATGTCACACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02376 | -36 | 3.7 | TAATATATTCCATGTCACACTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00773 | -78 | 3.7 | TAACTTGTGCTATGTCACACTT |
| -44 | 4.1 | ATATGCTATCTTCCTCACAAAC | ||
| Yersinia pestis KIM | y3043 | -163 | 3.7 | TTATTTGTCTATGCTCACAGAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1389 | -72 | 3.7 | ATTCTCGCTGTAGATCACCTTT |
| Edwardsiella tarda EIB202 | ETAE_2564 | -195 | 3.7 | TAGTGTAAGCGATACCACAAAC |
|
Position: -125
Score: 3.6 Sequence: GTAAGTGACTGGGGTAACAAAT
Locus tag: SSPA1862
|
||||
| SSPA1862 | -125 | 3.6 | GTAAGTGACTGGGGTAACAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybgE | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0735 | -300 | 3.6 | TAAATTGTTCTCGATCAAATTG |
| -255 | 3.6 | TAAATTGATCACCGTCGAAAAA | ||
| Salmonella typhimurium LT2 | STM0743 | -256 | 3.7 | TAAATTGATCGCTGTCGAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00739 | -252 | 3.6 | TATATTGATCACCGTCGAAAAA |
| Serratia proteamaculans 568 | Spro_1274 | -300 | 3.7 | AAGTCTAACCCACATCACGTAA |
| Edwardsiella tarda EIB202 | ETAE_2578 | -222 | 3.6 | TATTGTTATATTTGTTATCTTT |
| Proteus mirabilis HI4320 | PMI0576 | -247 | 3.8 | AAATATGCTGTTACTAACCTAA |
|
Position: -256
Score: 3.7 Sequence: TAAATTGATCGCTGTCGAAAAA
Locus tag: SSPA1865
|
||||
| SSPA1865 | -256 | 3.7 | TAAATTGATCGCTGTCGAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cydA | ||||
| Ortholog function: cytochrome d terminal oxidase, polypeptide subunit I | ||||
| Salmonella typhimurium LT2 | STM0740 | -256 | 3.7 | TAAATTGATCGCTGTCGAAAAA |
|
Position: -315
Score: 4.2 Sequence: TATCGTGACCTGTGTCACTGTT
Locus tag: SSPA1873
|
||||
| SSPA1873 | -315 | 4.2 | TATCGTGACCTGTGTCACTGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdhC | ||||
| Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit | ||||
| Enterobacter sp. 638 | Ent638_1222 | -295 | 4.2 | TATCGTGACTGTGATCACTGTT |
| Erwinia amylovora ATCC 49946 | EAM_1168 | -249 | 4.4 | AAGTGTGATTTTTGTCACTGTT |
| -190 | 3.6 | TAATGAGATTGTGATCCACTTA | ||
| Yersinia pestis KIM | y3071 | -254 | 4.5 | AATCGTGATCCTAATCACTGTT |
| Serratia proteamaculans 568 | Spro_1263 | -253 | 4.3 | ATCCGTGATCTAAATCACTGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1357 | -265 | 4.7 | ATTCGTGATCTAAATCACTGTT |
| Edwardsiella tarda EIB202 | ETAE_2588 | -261 | 3.7 | ATGCGTGACCGTTGTCACTGTT |
| Proteus mirabilis HI4320 | PMI0565 | -264 | 4.3 | AAAAGTGATCCCTCTCACTGTT |
|
Position: -177
Score: 4.8 Sequence: TTTAGTGATTATAATCACAAAA
Locus tag: SSPA1917
|
||||
| SSPA1917 | -177 | 4.8 | TTTAGTGATTATAATCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nagE | ||||
| Ortholog function: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0679 | -176 | 4.4 | TTTGGTGACAAAACTCACAAAA |
| -142 | 4.2 | ATTTGCGATACGAATTAAATTT | ||
| Salmonella typhimurium LT2 | STM0685 | -177 | 4.8 | TTTAGTGATTATAATCACAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_02485 | -181 | 4.9 | TTTGGTGATTCAAATCACAAAA |
| -147 | 3.6 | ATTTGCGATACGAATTAATTTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00700 | -153 | 4.7 | TTTGGTGATAATTATCACAAAA |
| -119 | 3.6 | ATTTGCGATACGAATTAATTTT | ||
| Erwinia amylovora ATCC 49946 | EAM_1148 | -161 | 4.8 | TAAGGTGACTTTAATCACATAT |
| Serratia proteamaculans 568 | Spro_1228 | -162 | 5.1 | TTTGGTGATGTAAATCACAAAA |
| -44 | 3.9 | AAATATGATAAAGCTCATTAAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1318 | -200 | 3.7 | AAATTTGAACCCGTTTACTATT |
| -132 | 3.9 | TATCGCTACAGTGATCACAATT | ||
|
Position: -171
Score: 4.7 Sequence: TTTTGTGATTATAATCACTAAA
Locus tag: SSPA1918
|
||||
| SSPA1918 | -171 | 4.7 | TTTTGTGATTATAATCACTAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nagB | ||||
| Ortholog function: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0678 | -212 | 4.3 | AAATTTAATTCGTATCGCAAAT |
| -178 | 4.6 | TTTTGTGAGTTTTGTCACCAAA | ||
| Salmonella typhimurium LT2 | STM0684 | -205 | 3.7 | AAAATTAATTCGCCTCGCAAAT |
| -171 | 4.7 | TTTTGTGATTATAATCACTAAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02486 | -218 | 3.8 | AAAATTAATTCGTATCGCAAAT |
| -184 | 5.2 | TTTTGTGATTTGAATCACCAAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00699 | -217 | 3.8 | AAAATTAATTCGTATCGCAAAT |
| -183 | 5 | TTTTGTGATAATTATCACCAAA | ||
| Enterobacter sp. 638 | Ent638_1193 | -218 | 3.8 | AAAATTAATTCGTATCGCAAAT |
| -184 | 4.6 | TTTTGTGAGTTTTGTCACCAAA | ||
| Erwinia amylovora ATCC 49946 | EAM_1147 | -195 | 4.9 | ATATGTGATTAAAGTCACCTTA |
| Yersinia pestis KIM | y1202 | -214 | 5.1 | TTTTGTGATAAATATCACCAAA |
| Serratia proteamaculans 568 | Spro_1227 | -194 | 5.3 | TTTTGTGATTTACATCACCAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1326 | -180 | 5 | TTATGTGATAAAAATCACCAAA |
| Edwardsiella tarda EIB202 | ETAE_2617 | -190 | 5 | ATTTGTGATAACTATCACCAAT |
| Proteus mirabilis HI4320 | PMI0454 | -217 | 4.9 | ATTTGTGATTAAAGTCACCTAT |
|
Position: -87
Score: 4 Sequence: AAATGTTAACAAACACACATAA
Locus tag: SSPA1928
|
||||
| SSPA1928 | -87 | 4 | AAATGTTAACAAACACACATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnH2 | ||||
| Ortholog function: glutamate and aspartate transporter subunit | ||||
| Salmonella typhimurium LT2 | STM0665 | -87 | 4 | AAATGTTAACAAACACACATAA |
|
Position: -92
Score: 4.2 Sequence: AAGTGTGATTTTCGTCCCCATA
Locus tag: SSPA1950
|
||||
| SSPA1950 | -92 | 4.2 | AAGTGTGATTTTCGTCCCCATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybeD | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0631 | -94 | 3.6 | AAGTGTAATTTCCGTCCCCATA |
| Salmonella typhimurium LT2 | STM0636 | -93 | 4.2 | AAGTGTGATTTTCGTCCCCATA |
| -35 | 3.9 | AGTTGTTATTTTTTTTACGTAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02527 | -91 | 4.4 | AAGTGTGATTTCCATCCCCATA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00663 | -97 | 4.4 | AAGTGTGATTTCCATCCCCATA |
| Enterobacter sp. 638 | Ent638_1166 | -90 | 4.4 | AAGTGTGATTTCCATCCCCATA |
| Yersinia pestis KIM | y1174 | -146 | 4.2 | TATTGTGATTAATCTTATATTG |
|
Position: -114
Score: 4.3 Sequence: TAACGCGATATTTATCACTTTT
Locus tag: SSPA1957
|
||||
| SSPA1957 | -114 | 4.3 | TAACGCGATATTTATCACTTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cspE | ||||
| Ortholog function: cold shock protein E | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0623 | -114 | 4 | TAACGCGACTTTTATCACTTTT |
| Salmonella typhimurium LT2 | STM0629 | -114 | 4.3 | TAACGCGATATTTATCACTTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02534 | -21 | 4.3 | TAACGCGATATTTATCACTTTT |
| Enterobacter sp. 638 | Ent638_1159 | -114 | 3.8 | TAACGCGACTTTTGTCACTTTT |
| Erwinia amylovora ATCC 49946 | EAM_1116 | -113 | 3.6 | AAAAACGATATTTATCACTTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1294 | -113 | 3.9 | TTTAGCGACTTTTATCACTTTT |
|
Position: -141
Score: 3.8 Sequence: GAATGTGAACTAAATCACTTCA
Locus tag: SSPA1969
|
||||
| SSPA1969 | -141 | 3.8 | GAATGTGAACTAAATCACTTCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rnk | ||||
| Ortholog function: Regulator of nucleoside diphosphate kinase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0610 | -140 | 3.8 | GAATGTGACGCAAATCACTTCA |
| Salmonella typhimurium LT2 | STM0616 | -141 | 3.8 | GAATGTGAACTAAATCACTTCA |
| Citrobacter koseri ATCC BAA-895 | CKO_02549 | -141 | 3.9 | GAATGTGAGCTAAATCACTTCA |
| Enterobacter sp. 638 | Ent638_1148 | -187 | 4.1 | AAATCTGAGAACGATCACGTTT |
| -140 | 3.8 | GAATGTGACATTCATCACTTCA | ||
| Serratia proteamaculans 568 | Spro_4382 | -170 | 3.7 | CTTCGTGATCGGGATCTCTTTC |
| -67 | 3.8 | TTTTGTGCTGTTTTTCCGAATT | ||
| Edwardsiella tarda EIB202 | ETAE_0492 | -145 | 4.4 | ATTTGTGAGCCAGCTCTCTTTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4046 | -127 | 3.7 | GTTCGTGATCATGATCTCTTTA |
|
Position: -99
Score: 3.8 Sequence: AATTGAGACTTCCTTCAAACAC
Locus tag: SSPA2072
|
||||
| SSPA2072 | -99 | 3.8 | AATTGAGACTTCCTTCAAACAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fsr | ||||
| Ortholog function: fosmidomycin resistance protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0479 | -65 | 3.7 | TAGTCTGGTAATAATCACAAAT |
| Salmonella typhimurium LT2 | STM0493 | -100 | 3.8 | AATTGAGACTTCCTTCAAACAC |
| Citrobacter koseri ATCC BAA-895 | CKO_02670 | -102 | 3.8 | AATTGAGACTTCCTTCAAACAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00460 | -197 | 3.8 | AATTGCGACTTCCTTCAAACCT |
| Enterobacter sp. 638 | Ent638_0958 | -92 | 4 | AATTGCGACTTTCCTCAAATCT |
| Serratia proteamaculans 568 | Spro_1146 | -100 | 4.7 | TTTTGCGATGTGCGTCAAATTA |
|
Position: -97
Score: 4.4 Sequence: AGCAGTGATATAGATCACATAC
Locus tag: SSPA2093
|
||||
| SSPA2093 | -97 | 4.4 | AGCAGTGATATAGATCACATAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: maa | ||||
| Ortholog function: maltose O-acetyltransferase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0459 | -97 | 4.8 | CTATGTGATCTTTATCACACAG |
| Salmonella typhimurium LT2 | STM0472 | -97 | 4.7 | AACAGTGATATAGATCACATAG |
| Citrobacter koseri ATCC BAA-895 | CKO_02692 | -101 | 4.6 | TCTCGTGATTTAGATCACATCA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00440 | -100 | 4.7 | CTTTGTGATAGACATCACATCA |
| Enterobacter sp. 638 | Ent638_0939 | -98 | 4.3 | TGCTGTGACTCTGATCACATCA |
|
Position: -100
Score: 3.9 Sequence: ATGAGTGACATGTGCCACACTT
Locus tag: SSPA2099
|
||||
| SSPA2099 | -100 | 3.9 | ATGAGTGACATGTGCCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybaY | ||||
| Ortholog function: Glycoprotein-polysaccharide metabolism | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0453 | -101 | 4.3 | ATGCGTGATGTGTGCCACACTT |
| Salmonella typhimurium LT2 | STM0465 | -100 | 3.9 | ATGAGTGACATGTGCCACACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02705 | -102 | 4 | ATAAGTGAGATATGCCACACTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00416 | -99 | 3.8 | ATCTGAGATCTGTGCCACACTT |
| Enterobacter sp. 638 | Ent638_0921 | -96 | 4.3 | ATAAGTGATATGTGCCACACTT |
|
Position: -136
Score: 3.5 Sequence: AAGTGTGGCACATGTCACTCAT
Locus tag: SSPA2100
|
||||
| SSPA2100 | -136 | 3.5 | AAGTGTGGCACATGTCACTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tesB | ||||
| Ortholog function: Acyl-CoA thioesterase II (EC 3.1.2.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0452 | -138 | 3.9 | AAGTGTGGCACACATCACGCAT |
| Citrobacter koseri ATCC BAA-895 | CKO_02706 | -135 | 3.9 | AAGTGTGGCATATCTCACTTAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00415 | -139 | 3.8 | AAGTGTGGCACAGATCTCAGAT |
| Enterobacter sp. 638 | Ent638_0920 | -131 | 4 | AAGTGTGGCACATATCACTTAT |
| Yersinia pestis KIM | y1043 | -153 | 3.6 | TAGCGTGCTAATTATAGCATAA |
| Serratia proteamaculans 568 | Spro_1111 | -54 | 3.6 | TGCCGTGATATTCCGCACACTG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1162 | -154 | 3.7 | TAGTATGATTCAATAAACACAA |
|
Position: -129
Score: 4 Sequence: ATATGTGAAACAAGACATATTT
Locus tag: SSPA2152
|
||||
| SSPA2152 | -129 | 4 | ATATGTGAAACAAGACATATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tsx | ||||
| Ortholog function: Nucleoside-specific channel-forming protein Tsx precursor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0411 | -250 | 3.7 | TTTTGTTACTCTGCTTACATCA |
| -129 | 3.9 | AACTGTGAAACGAAACATATTT | ||
| Salmonella typhimurium LT2 | STM0413 | -129 | 4 | ATATGTGAAACAAGACATATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02750 | -131 | 3.7 | ATCTGTGAAACAAGACATATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00363 | -131 | 3.8 | TTATGTGAAACAACACGTATTT |
| Enterobacter sp. 638 | Ent638_0879 | -124 | 4.1 | ATATGTGAAACAACACATATTT |
| Erwinia amylovora ATCC 49946 | EAM_2589 | -218 | 5.3 | ATTTGTGATAAAAATCACACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3796 | -172 | 5.5 | TTATGTGATTAAAATCACATAA |
| Edwardsiella tarda EIB202 | ETAE_2935 | -245 | 4.6 | TAATTTGATGAGAATCTCAATT |
|
Position: -139
Score: 5.4 Sequence: TAATGTGACATGTTTCACAAAA
Locus tag: SSPA2184
|
||||
| SSPA2184 | -139 | 5.4 | TAATGTGACATGTTTCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: idnD | ||||
| Ortholog function: L-idonate 5-dehydrogenase | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02795 | -140 | 5.4 | TAATGTGACATGTTTCACAAAT |
|
Position: -82
Score: 5.6 Sequence: TAATGTGATTTACATCACACAT
Locus tag: SSPA2350
|
||||
| SSPA2350 | -82 | 5.6 | TAATGTGATTTACATCACACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: raiA | ||||
| Ortholog function: stationary phase translation inhibitor and ribosome stability factor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2597 | -81 | 4.8 | TTATGAGATTTTCATCACACAT |
| Citrobacter koseri ATCC BAA-895 | CKO_03918 | -40 | 5.2 | TAATGTGATTTAAATCACGCTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02919 | -88 | 5.6 | AAATGTGATTTATATCACACAT |
| Enterobacter sp. 638 | Ent638_3076 | -81 | 5.4 | ATGTGTGATTTAGATCACACAT |
| Erwinia amylovora ATCC 49946 | EAM_2617 | -83 | 5.2 | AAATGTGATTTCAATCACGATT |
| Serratia proteamaculans 568 | Spro_0882 | -83 | 4.8 | ATACGTGATTTTCATCACGCAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3349 | -86 | 4 | AAAAGCGATCAATCTCACGCTT |
| Edwardsiella tarda EIB202 | ETAE_2834 | -82 | 3.8 | ATCCGTGATTTTCCTCTCACAC |
| Proteus mirabilis HI4320 | PMI0391 | -82 | 4.6 | AAAAGTGATCTTGATCATGTTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1266 | -87 | 5.1 | AATAGTGATTTAGATCACCTTT |
|
Position: -71
Score: 3.9 Sequence: TTTTGTGGTATGGTTTAAACAT
Locus tag: SSPA2354
|
||||
| SSPA2354 | -71 | 3.9 | TTTTGTGGTATGGTTTAAACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aroF | ||||
| Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase | ||||
| Salmonella typhimurium LT2 | STM2670 | -71 | 3.9 | TTTTGTGGTATGGTTTAAACAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02923 | -159 | 3.8 | TATTGTTATACGCATCGCGCCA |
| Edwardsiella tarda EIB202 | ETAE_2837 | -117 | 3.8 | ATGTACGATATTGTTTACATAT |
| Proteus mirabilis HI4320 | PMI0387 | -214 | 4.5 | TTATTTTATCTTAGTCACATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1262 | -262 | 3.6 | TGTTTTGATATTGATTTTATTT |
|
Position: -182
Score: 4.3 Sequence: AAGTGTTATTATGATCGCAAAA
Locus tag: SSPA2503
|
||||
| SSPA2503 | -182 | 4.3 | AAGTGTTATTATGATCGCAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mltB | ||||
| Ortholog function: membrane-bound lytic murein transglycosylase B | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2701 | -184 | 4.6 | AAGTGTTATTTTGATCGCAAAA |
| Salmonella typhimurium LT2 | STM2831 | -182 | 4.4 | AAGTGTTATTGTGATCGCAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_04055 | -184 | 4.5 | AAGTGTTATTTTGATCTCAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03036 | -296 | 4.3 | AAGTGTTAAATGGATCGCAAAA |
| Serratia proteamaculans 568 | Spro_3399 | -136 | 4.1 | TTCTGTGCTGCCCGTCACGTTT |
|
Position: -93
Score: 4.3 Sequence: TTTTGCGATCATAATAACACTT
Locus tag: SSPA2504
|
||||
| SSPA2504 | -93 | 4.3 | TTTTGCGATCATAATAACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: srlA | ||||
| Ortholog function: PTS system, glucitol/sorbitol-specific IIC component (EC 2.7.1.69) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2702 | -93 | 4.4 | TTTTGCGATCAAAATAACACTT |
| Salmonella typhimurium LT2 | STM2832 | -93 | 4.3 | TTTTGCGATCACAATAACACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_04056 | -93 | 4.3 | TTTTGAGATCAAAATAACACTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03037 | -92 | 4.6 | TTTTGCGATCCATTTAACACTT |
| Serratia proteamaculans 568 | Spro_3569 | -110 | 4.9 | AATTGTGATCTATTTAAAACAA |
|
Position: -90
Score: 4 Sequence: TTTTGTGAAACAACTCACCGCA
Locus tag: SSPA2587
|
||||
| SSPA2587 | -90 | 4 | TTTTGTGAAACAACTCACCGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ygbJ | ||||
| Ortholog function: D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2736 | -90 | 4.9 | TTATGTGAATCAGATCACCATA |
| Salmonella typhimurium LT2 | STM2918 | -90 | 4 | TTTTGTGAAACAACTCACCGCA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01605 | -91 | 5 | ATTCGTGATAACTCTCACATAT |
| Erwinia amylovora ATCC 49946 | EAM_1106 | -90 | 4.4 | TGATGTGAAGTTTATCACTAAT |
| Serratia proteamaculans 568 | Spro_1492 | -92 | 4.1 | AATTGTGACAACGATCGCTGAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4327 | -92 | 4.5 | TTATGTGATAAAAATCACCACA |
| Edwardsiella tarda EIB202 | ETAE_1922 | -93 | 3.9 | ATTTGTGAGGATAAACACGGTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2507 | -147 | 3.8 | ATAAATAATATAAATCAAATAA |
| -90 | 3.7 | GAATGTGATAACCATCGTGTAT | ||
|
Position: -128
Score: 4 Sequence: TGCGGTGAGTTGTTTCACAAAA
Locus tag: SSPA2588
|
||||
| SSPA2588 | -128 | 4 | TGCGGTGAGTTGTTTCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ygbI | ||||
| Ortholog function: Hypothetical transcriptional regulator ygbI | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2735 | -166 | 3.7 | TTGTTTGATATTGTGAATATAA |
| -127 | 5.2 | TATGGTGATCTGATTCACATAA | ||
| Salmonella typhimurium LT2 | STM2919 | -128 | 4 | TGCGGTGAGTTGTTTCACAAAA |
| -87 | 3.6 | TTTTGTGAAGGCAATCCTCATA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01606 | -271 | 3.6 | TAATGTGATTTAATGATAGAAT |
| -230 | 4.7 | ATATGTGAGAGTTATCACGAAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_pKPN4p07051 | -233 | 3.6 | TAATGTGATTTAATGATAGAAT |
| -192 | 4.7 | TTATGTGAGAGTTATCACGAAT | ||
| Erwinia amylovora ATCC 49946 | EAM_1104 | -238 | 4.5 | ATTAGTGATAAACTTCACATCA |
| Serratia proteamaculans 568 | Spro_1493 | -211 | 3.9 | ATCAGCGATCGTTGTCACAATT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4325 | -267 | 4.8 | TGTGGTGATTTTTATCACATAA |
| Edwardsiella tarda EIB202 | ETAE_1921 | -132 | 3.9 | AACCGTGTTTATCCTCACAAAT |
|
Position: -176
Score: 4.2 Sequence: ATTTGAGATCGGGATCACTGAT
Locus tag: SSPA2639
|
||||
| SSPA2639 | -176 | 4.2 | ATTTGAGATCGGGATCACTGAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdaC | ||||
| Ortholog function: Serine transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2796 | -179 | 4.2 | ATTTGAGATCAAGATCACTGAT |
| Salmonella typhimurium LT2 | STM2970 | -176 | 4.2 | ATTTGAGATCGGGATCACTGAT |
| Citrobacter koseri ATCC BAA-895 | CKO_04152 | -176 | 4.1 | ATTTGGGATCGCGATCACTGAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03139 | -158 | 4.2 | ATTTGAGATCGCGATCACTGAT |
| Enterobacter sp. 638 | Ent638_3249 | -176 | 4.1 | ATTTGGGATCAGGATCACTGAT |
| Erwinia amylovora ATCC 49946 | EAM_1294 | -300 | 3.6 | ATTTGTTAAAAATCGCAAAAAA |
| -180 | 3.9 | AAATGTGATTCCGATCACCGGC | ||
| Yersinia pestis KIM | y2862 | -286 | 4.3 | AATTGAGATCACGATCACGGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3158 | -195 | 3.7 | TTCTGTGATCGCCTCAATATTA |
| Proteus mirabilis HI4320 | PMI0672 | -283 | 4.3 | ATTTGAGATGGTGATCACGGTA |
|
Position: -157
Score: 4.8 Sequence: TTAATTGATGTGTATCACAAAA
Locus tag: SSPA2644
|
||||
| SSPA2644 | -157 | 4.8 | TTAATTGATGTGTATCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fucA | ||||
| Ortholog function: L-fuculose phosphate aldolase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2800 | -144 | 4.1 | TTAGTTGAACCAGGTCACAAAA |
| -54 | 4 | TAGTGTGAAAGGAACAACATTA | ||
| Salmonella typhimurium LT2 | STM2974 | -157 | 4.8 | TTAATTGATGTGAATCACAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_04159 | -144 | 4.7 | TTAATTGATGCGTATCACAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03151 | -155 | 4.4 | ATAATTGACGCGGCTCACAAAA |
| Edwardsiella tarda EIB202 | ETAE_0293 | -175 | 4.2 | AGTCTTGATGACGGTCACAAAA |
|
Position: -207
Score: 4.7 Sequence: TAAAGTGATGATAATCACAGAA
Position: -167
Score: 4.9 Sequence: AAATGTGACCGCCATCATATTA
Locus tag: SSPA2645
|
||||
| SSPA2645 | -207 | 4.7 | TAAAGTGATGATAATCACAGAA | |
| -167 | 4.9 | AAATGTGACCGCCATCATATTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fucP | ||||
| Ortholog function: L-fucose permease | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2801 | -207 | 4.9 | TAAAGTGATGGTAGTCACATAA |
| -167 | 4.5 | AAGTGTGACCGCCGTCATATTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04160 | -219 | 5 | TAAAGTGATGATAATCACATAA |
| -179 | 4.8 | AAATGTGACCACCATCATATTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03152 | -260 | 4.7 | TAAAGTGACAATAATCACATAA |
| -220 | 4.6 | AAGTGTGACCATCATCATATTA | ||
|
Position: -85
Score: 4.7 Sequence: TAATGAGATCGCGATCGCATTT
Locus tag: SSPA2658
|
||||
| SSPA2658 | -85 | 4.7 | TAATGAGATCGCGATCGCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mltA | ||||
| Ortholog function: membrane-bound lytic murein transglycosylase A | ||||
| Salmonella typhimurium LT2 | STM2988 | -104 | 3.7 | ATTTTTAAACGAATTTACATAA |
| -85 | 4.7 | TAATGAGATCGCGATCGCATTT | ||
|
Position: -271
Score: 4 Sequence: TTTTATGATCTCATTAGCATAG
Position: -131
Score: 4.9 Sequence: AAGTGTAATATCCATCACATAT
Locus tag: SSPA2686
|
||||
| SSPA2686 | -271 | 4 | TTTTATGATCTCATTAGCATAG | |
| -131 | 4.9 | AAGTGTAATATCCATCACATAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: araE | ||||
| Ortholog function: sugar transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2841 | -131 | 4.4 | AATTGGAATATCCATCACATAA |
| Salmonella typhimurium LT2 | STM3016 | -271 | 4 | TTTTATGATCTCATTAGCATAG |
| -131 | 4.9 | AAGTGTAATATCCATCACATAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03264 | -191 | 4.4 | AAGTTTAATGTCCATCACAAAA |
| Enterobacter sp. 638 | Ent638_3294 | -209 | 3.7 | CGAGATGACATCGATCACATTT |
| -130 | 4.1 | AATTGGAATATCCATCACAGAA | ||
|
Position: -92
Score: 4.5 Sequence: CTTTGTGATAAAACTCACTTTT
Locus tag: SSPA2689
|
||||
| SSPA2689 | -92 | 4.5 | CTTTGTGATAAAACTCACTTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yqeF | ||||
| Ortholog function: Acetyl-CoA acetyltransferase (EC 2.3.1.9) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2844 | -91 | 4.6 | CTTTGTGATAAAAATCACTTTT |
| Salmonella typhimurium LT2 | STM3019 | -92 | 4.5 | CTTTGTGATAAAACTCACTTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_04222 | -92 | 4.6 | CTTTGTGATAAAACTCACCATT |
|
Position: -218
Score: 4.5 Sequence: TTTGGTGACATGTATCACGTTT
Locus tag: SSPA2732
|
||||
| SSPA2732 | -218 | 4.5 | TTTGGTGACATGTATCACGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: serA | ||||
| Ortholog function: D-3-phosphoglycerate dehydrogenase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2913 | -210 | 4.1 | TTTGGTGACATGTGTCACGCTT |
| Salmonella typhimurium LT2 | STM3062 | -217 | 4.5 | TTTGGTGACATGTATCACGTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03348 | -214 | 4.6 | TTTGGTGACTTCTGTCACATTT |
| Enterobacter sp. 638 | Ent638_3332 | -215 | 4.1 | TTCGGTGACTTGTATCACGTTT |
| Yersinia pestis KIM | y3301 | -126 | 4.8 | TTTGGTGATATATATCACATTC |
| Serratia proteamaculans 568 | Spro_3923 | -215 | 4.4 | TTTGGTGACATATGTCACATTG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3905 | -214 | 3.9 | TTTGGTACTTAATATCACATTT |
| Proteus mirabilis HI4320 | PMI2031 | -210 | 4 | TTCAGTGATATATATCACACGA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3605 | -207 | 4.4 | TTTAGTGATATATTTCATATCT |
| -178 | 4.2 | TTATTTGATCTAAATCCTAATT | ||
| -105 | 4.4 | TTATGTGATGGGAATAGCAATC | ||
|
Position: -213
Score: 5 Sequence: AAATGTGATGCAGGTCAGATAA
Locus tag: SSPA2740
|
||||
| SSPA2740 | -213 | 5 | AAATGTGATGCAGGTCAGATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: epd | ||||
| Ortholog function: D-erythrose 4-phosphate dehydrogenase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2927 | -213 | 4.7 | AAGTGTGATGTGAGTCAGATAA |
| Salmonella typhimurium LT2 | STM3070 | -213 | 5 | AAATGTGATGCAGGTCAGATAA |
| Citrobacter koseri ATCC BAA-895 | CKO_04297 | -213 | 4.8 | AAGTGTGATGCAGGTCAGATAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03356 | -213 | 4.8 | AAATGTGATGTGAGTCATATAG |
| Enterobacter sp. 638 | Ent638_3340 | -215 | 4.5 | AAATGTGACGCAAGTCATATAG |
| Erwinia amylovora ATCC 49946 | EAM_2813 | -208 | 4.1 | TTTTGTGACGCAGATCGAAAGT |
| Yersinia pestis KIM | y3309 | -216 | 3.7 | AATTGTGCCCTTTTTCAGGGAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3913 | -194 | 4.1 | TTTTATGACGCAGGTCACTCTT |
| Edwardsiella tarda EIB202 | ETAE_2958 | -233 | 4.9 | AATTGTGATGCAATGCACGTTT |
| Proteus mirabilis HI4320 | PMI0241 | -253 | 4.4 | AAATGTTAACAAGAGCACATTT |
|
Position: -84
Score: 4.6 Sequence: CATTGTGATTAGCCTCACATCT
Locus tag: SSPA2753
|
||||
| SSPA2753 | -84 | 4.6 | CATTGTGATTAGCCTCACATCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: galP | ||||
| Ortholog function: sugar transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2943 | -156 | 3.6 | TATGATGATATAACTCAATTAT |
| -82 | 4.9 | TGATGTGATTTGCTTCACATCT | ||
| Salmonella typhimurium LT2 | STM3091 | -83 | 4.6 | CATTGTGATTAGCCTCACATCT |
| Citrobacter koseri ATCC BAA-895 | CKO_04318 | -83 | 5.3 | TAACGTGATTCGAATCACATAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03376 | -84 | 3.8 | AGCCGTGATTATAGTCACGTTT |
| Enterobacter sp. 638 | Ent638_3347 | -171 | 3.9 | TATTGGGATGCACATCAACTCT |
| -102 | 3.7 | TAGTGTAACCGATTACACCAAT | ||
| -84 | 5.3 | CAATGTGATTTATCTCACATAT | ||
| Erwinia amylovora ATCC 49946 | EAM_2827 | -152 | 4.1 | TCATGTGATCTGTCGCACAGTC |
| Serratia proteamaculans 568 | Spro_1160 | -276 | 4.5 | TGGTGTGATATCGGTTACATTT |
| -100 | 3.6 | TTGTGTAATCGTTTCCACTAAT | ||
| -82 | 4.6 | TAATGTGATCGCACTCACTTAC | ||
| Edwardsiella tarda EIB202 | ETAE_2966 | -275 | 3.7 | CAAAGTGAAAACGATTACATTT |
| -61 | 4.5 | TTATGTGATCATGCGCACTTTA | ||
|
Position: -125
Score: 4.3 Sequence: TTTTGTTATCCATCTCTAAAAA
Locus tag: SSPA2768
|
||||
| SSPA2768 | -125 | 4.3 | TTTTGTTATCCATCTCTAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ansB | ||||
| Ortholog function: periplasmic L-asparaginase II | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2957 | -125 | 4 | TTTTGTTACCTGCCTCTAACTT |
| Salmonella typhimurium LT2 | STM3106 | -125 | 4.3 | TTTTGTTATCCATCTCTAAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_04332 | -125 | 3.6 | TTTTGATATCCATCTCTAAAAA |
| Proteus mirabilis HI4320 | PMI0708 | -81 | 3.6 | ATTCGTTCTATTTATCACGGAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1616 | -76 | 3.8 | AAGTCTGGTATGTATCACAGAT |
|
Position: -166
Score: 4 Sequence: AAGTGTTAACTCCGTCACCATT
Locus tag: SSPA2775
|
||||
| SSPA2775 | -166 | 4 | AAGTGTTAACTCCGTCACCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nupG | ||||
| Ortholog function: Nucleoside permease NupG | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2964 | -166 | 5.2 | AAATGTTATCCACATCACAATT |
| -116 | 3.8 | TTATTTGCCACAGGTAACAAAA | ||
| Salmonella typhimurium LT2 | STM3113 | -166 | 3.9 | AAGTGTTAACTCCGTCACCCTT |
| -116 | 3.6 | ATATTTGTCACAGGTAACAAAA | ||
| -50 | 3.6 | AAATGTGCCTTTTAAAACATTC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04339 | -166 | 3.9 | AAGTGTTAACTCCATCACTCTT |
| -116 | 3.6 | ATATTTGTCACAGGTAACAAAA | ||
| -50 | 3.6 | AAATGTGCCTTTTAAAACATTC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03396 | -49 | 4.2 | TAATGTTATTTTAAAAACATAA |
| Enterobacter sp. 638 | Ent638_3369 | -163 | 4.5 | AAACGTTATTTGCATCACAATC |
| -114 | 3.7 | TTTTTTGCGGGAGGTAACAAAA | ||
|
Position: -205
Score: 4.3 Sequence: AAAATTGACGCAGATCAAATAA
Position: -155
Score: 4.5 Sequence: ATTTGTGATTTGGTTATCCAAT
Locus tag: SSPA2801
|
||||
| SSPA2801 | -205 | 4.3 | AAAATTGACGCAGATCAAATAA | |
| -155 | 4.5 | ATTTGTGATTTGGTTATCCAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uxuA | ||||
| Ortholog function: Mannonate dehydratase (EC 4.2.1.8) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4322 | -271 | 3.8 | TGTTGCGATGAATGTCACATCC |
| -186 | 4.5 | TCTTGTGATGTGGTTAACCAAT | ||
| Salmonella typhimurium LT2 | STM3135 | -205 | 4.3 | AAAATTGACACAGATCAAATAA |
| -155 | 4.6 | ATTTGTGATTTGGTTAGCCAAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00609 | -115 | 3.9 | GATTGTGAGCTGGATCAATCAA |
| Enterobacter sp. 638 | Ent638_2767 | -116 | 3.9 | TTCTGTGAGTTGGATCAATCAA |
| Serratia proteamaculans 568 | Spro_3238 | -167 | 3.9 | AACCGTGAAGTGGATCAACCAA |
| -48 | 4.1 | AATCTTGATCACCACCACAATA | ||
| Edwardsiella tarda EIB202 | ETAE_2289 | -188 | 4.2 | AATCGTGAGGCGGATCAACCAA |
|
Position: -228
Score: 3.3 Sequence: TCGCGTGATAATTTTCATGCTT
Position: -184
Score: 4.2 Sequence: TCATGTGACCCATATCTCCTTA
Position: -123
Score: 4.2 Sequence: TATTGTGATTTTGCGCATTAAA
Locus tag: SSPA2861
|
||||
| SSPA2861 | -228 | 3.3 | TCGCGTGATAATTTTCATGCTT | |
| -184 | 4.2 | TCATGTGACCCATATCTCCTTA | ||
| -123 | 4.2 | TATTGTGATTTTGCGCATTAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glgS | ||||
| Ortholog function: glycogen synthesis protein GlgS | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3049 | -225 | 3.4 | AATAGTTTCCTTGCTTACATTT |
| -203 | 3.4 | ATCTGTGTTAATAATAACACAG | ||
| -124 | 3.8 | AAGTGTGATCGGGGACAATATA | ||
| Salmonella typhimurium LT2 | STM3197 | -222 | 3.3 | TCGCGTGATAATTTTCATGCTT |
| -178 | 4.2 | TCATGTGACCCATATCTCCTTA | ||
| -117 | 4.2 | TATTGTGATTTTGCGCATTAAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04437 | -118 | 3.4 | AAGTGTGATGTCAGGCAACTGA |
|
Position: -105
Score: 4 Sequence: AATTGCGATCCAGAGCAATTTT
Locus tag: SSPA2881
|
||||
| SSPA2881 | -105 | 4 | AATTGCGATCCAGAGCAATTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aer | ||||
| Ortholog function: aerotaxis sensor receptor, senses cellular redox state or proton motive force | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3072 | -104 | 5 | AATTGCGATCTAAATCAAATTA |
| Salmonella typhimurium LT2 | STM3217 | -220 | 3.6 | AAAGGTGAGCCAGGGCAGATTT |
| -105 | 4 | AATTGCGATCCAGAGCAATTTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04485 | -290 | 3.9 | ATTGGTGATGTTTTGCGCAATG |
| -105 | 5 | AATTGCGATCTAAATCAAATTT | ||
| Enterobacter sp. 638 | Ent638_3527 | -106 | 4.5 | AATTGCGATCTGGATCAATTTT |
|
Position: -113
Score: 4.3 Sequence: TTTTTTGAATCCCATCACAATC
Locus tag: SSPA2883
|
||||
| SSPA2883 | -113 | 4.3 | TTTTTTGAATCCCATCACAATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadH | ||||
| Ortholog function: 2,4-dienoyl-CoA reductase [NADPH] (2,4-dienoyl coenzyme A reductase) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3081 | -112 | 3.9 | CTTTTTGAATCCCATCACAAAC |
| Salmonella typhimurium LT2 | STM3219 | -113 | 4.3 | TTTTTTGAATCCCATCACAATC |
| Citrobacter koseri ATCC BAA-895 | CKO_04487 | -113 | 4.3 | TTTTTTGAATCCCATCACAATC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03510 | -111 | 3.9 | TTCTTTGAATCCCATCACAATC |
| Enterobacter sp. 638 | Ent638_3539 | -111 | 3.9 | ATCTTTGAATCCCATCACATTC |
| Erwinia amylovora ATCC 49946 | EAM_0507 | -169 | 3.8 | AACCGTGACTGAGATCGCTAAA |
| Yersinia pestis KIM | y3589 | -131 | 4 | ATTCATGACGGCTATCACAATC |
| Serratia proteamaculans 568 | Spro_4309 | -126 | 4.2 | ATTCATGACATCTATCACATTC |
| Proteus mirabilis HI4320 | PMI3702 | -213 | 3.8 | TATTATTATATGATTAAAAAAT |
| -103 | 3.8 | TTCCATGATTAAGATCACAACT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3990 | -161 | 4.3 | TTTCATGACCTTCATCACATTC |
|
Position: -229
Score: 4.5 Sequence: TGTTGTGATACGCGTCAAATAG
Locus tag: SSPA2900a
|
||||
| SSPA2900a | -229 | 4.5 | TGTTGTGATACGCGTCAAATAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhaO | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3110 | -228 | 4.6 | TTTTGTGATCTGCCGCAAATAG |
| Salmonella typhimurium LT2 | STM3239 | -230 | 4.5 | TGTTGTGATACGCGTCAAATAG |
| Citrobacter koseri ATCC BAA-895 | CKO_04511 | -180 | 4.7 | TGTTGTGATCTGCTTCAAGAAT |
|
Position: -188
Score: 3.9 Sequence: TTTTTTGATTGAAATCAGGCTA
Position: -83
Score: 5.1 Sequence: ATTTGTGAGTGGTCTCACATAA
Locus tag: SSPA2908
|
||||
| SSPA2908 | -188 | 3.9 | TTTTTTGATTGAAATCAGGCTA | |
| -83 | 5.1 | ATTTGTGAGTGGTCTCACATAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tdcA | ||||
| Ortholog function: Threonine catabolic operon transcriptional activator TdcA | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3118 | -225 | 4 | TGATGTTATCGCCATAAAATAT |
| -82 | 4.7 | ATTTGTGAGTGGTCGCACATAT | ||
| Salmonella typhimurium LT2 | STM3245 | -188 | 3.9 | TTTTTTGATTGAAATCAGGCTA |
| -83 | 4.7 | ATTTGTGAGTGGTCGCACATAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04518 | -225 | 4.3 | ATATGTTATCGCCATAAAATAT |
| -187 | 3.9 | TTTTTTGACAAAAATCATGATA | ||
| -82 | 4.6 | ATTTGTGAGTAGTCGCACATAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02296 | -82 | 4.6 | CTTTGTGAGAGCTCTCACATAA |
| -54 | 3.7 | AATTGCGATTTGTTACACTTTC | ||
| Enterobacter sp. 638 | Ent638_3565 | -82 | 3.9 | ATTTGTGAGTAACAGCACATCC |
|
Position: -99
Score: 4.4 Sequence: TACTTTGAGCCGGTTCACACTT
Locus tag: SSPA2938
|
||||
| SSPA2938 | -99 | 4.4 | TACTTTGAGCCGGTTCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: deaD | ||||
| Ortholog function: ATP-independent RNA helicase | ||||
| Salmonella typhimurium LT2 | STM3280.S | -154 | 3.9 | CTTTTTGATTGCCATCACCTTC |
| -99 | 4.4 | TACTTTGAGCCGGTTCACACTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04559 | -103 | 3.9 | CTTTTTGATTGCCATCACCTTC |
| -48 | 4.4 | TACTTTGAGCCGGTTCACACTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03570 | -154 | 3.8 | TTTTTTGCTTGCCATCACCTTC |
| -99 | 4.4 | TACTTTGAGCCGGTTCACACAT | ||
| Enterobacter sp. 638 | Ent638_3599 | -154 | 4.1 | TCTTATGATTGCCATCACCTTA |
| -99 | 4.4 | TACTTTGAGCCGGTTCACACTT | ||
| Erwinia amylovora ATCC 49946 | EAM_3065 | -99 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Yersinia pestis KIM | y0696 | -96 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Serratia proteamaculans 568 | Spro_0495 | -96 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0718 | -96 | 4.4 | CAATTTGAGCCGGTTCACACTT |
| Edwardsiella tarda EIB202 | ETAE_0411 | -96 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Proteus mirabilis HI4320 | PMI3424 | -80 | 5 | TAATTTGAGCCAGTTCACATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4523 | -95 | 5 | TAATTTGAGCCAGTTCACATTT |
|
Position: -91
Score: 3.9 Sequence: ATTTGTTACATGAATCATTTAA
Position: -69
Score: 3.6 Sequence: ATGTGTGAAGCGTAGCATTTTA
Locus tag: SSPA2982
|
||||
| SSPA2982 | -91 | 3.9 | ATTTGTTACATGAATCATTTAA | |
| -69 | 3.6 | ATGTGTGAAGCGTAGCATTTTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: elbB | ||||
| Ortholog function: sigma cross-reacting protein 27A (SCRP-27A) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3209 | -91 | 3.7 | ATTTGTTACATGAATCAGTTAA |
| -69 | 4 | ATGTGTGATGCGTACCATTTTT | ||
| Salmonella typhimurium LT2 | STM3327 | -91 | 3.9 | ATTTGTTACATGAATCATTTAA |
| -69 | 3.6 | ATGTGTGAAGCGTAGCATTTTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04612 | -92 | 3.7 | TTTTGTTACATGAATCAGTTAA |
| -70 | 3.6 | ATGTGTGAAGCGCAGCATTTTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03618 | -93 | 3.6 | ATTTGTTACATGAATCAGTAAA |
| -71 | 3.8 | ATATGTGAAGCATAGCGAGTTA | ||
| Serratia proteamaculans 568 | Spro_4341 | -72 | 3.7 | ATGTGTGATGTAGATTAGTGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0316 | -72 | 3.7 | ATGTGTGATGTAGATTAGTGTT |
| Proteus mirabilis HI4320 | PMI3679 | -174 | 4.1 | TTTTTTGATTATCATTACATAG |
|
Position: -288
Score: 3.7 Sequence: ATCTGTGCTACAGCACACTTTT
Locus tag: SSPA2985
|
||||
| SSPA2985 | -288 | 3.7 | ATCTGTGCTACAGCACACTTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltB | ||||
| Ortholog function: glutamate synthase, large subunit | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3212 | -199 | 4.2 | AATTTTGCGCTAAAGCACATTT |
| Salmonella typhimurium LT2 | STM3330 | -288 | 3.7 | ATCTGTGCTACAGCACACTTTT |
| Enterobacter sp. 638 | Ent638_3656 | -298 | 3.9 | GATAGTGAGTCAGATCACACTC |
| Edwardsiella tarda EIB202 | ETAE_0527 | -278 | 4.9 | AACTGTGATGCAGCCCACATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4009 | -241 | 4 | ATATTTGACCTGATTTATATTT |
|
Position: -113
Score: 4.4 Sequence: TTTAGTGAAGCAGATCGCACTA
Locus tag: SSPA2994
|
||||
| SSPA2994 | -113 | 4.4 | TTTAGTGAAGCAGATCGCACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nanA | ||||
| Ortholog function: N-acetylneuraminate lyase (EC 4.1.3.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3225 | -115 | 4.6 | TTTAGTGAAGCAGATCGCATTA |
| Salmonella typhimurium LT2 | STM3339 | -113 | 4.4 | TTTAGTGAAGCAGATCGCACTA |
| Citrobacter koseri ATCC BAA-895 | CKO_04629 | -116 | 4.2 | TTTAGTGAAGTAGATCGCACTC |
| Enterobacter sp. 638 | Ent638_3661 | -112 | 4.6 | TTTAGTGAAGCAGATCGCATTA |
| Edwardsiella tarda EIB202 | ETAE_1381 | -141 | 4.5 | TTTAGTGAACTAGATCGCACAA |
|
Position: -60
Score: 5 Sequence: TTTTGTGATGAGGGTCACGAAA
Locus tag: SSPA3014
|
||||
| SSPA3014 | -60 | 5 | TTTTGTGATGAGGGTCACGAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhcN | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3238 | -60 | 5.1 | TTTTGTGATATGGGTCACGAAA |
| Salmonella typhimurium LT2 | STM3361 | -60 | 5 | TTTTGTGATGAGGGTCACGAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_04644 | -60 | 5 | TTTTGTGATGAGGGTCACGAAA |
| Enterobacter sp. 638 | Ent638_3673 | -58 | 5 | TTTTGTGATGAGGGTCACGAAA |
|
Position: -166
Score: 5.4 Sequence: AAAAGTGATTTAGATCACATAA
Locus tag: SSPA3019
|
||||
| SSPA3019 | -166 | 5.4 | AAAAGTGATTTAGATCACATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhcR | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3242 | -167 | 5.4 | AAAAGTGATTTAGATCACATAA |
| Salmonella typhimurium LT2 | STM3366 | -166 | 5.4 | AAAAGTGATTTAGATCACATAA |
| Citrobacter koseri ATCC BAA-895 | CKO_04650 | -168 | 5.4 | AAAAGTGATTTAGATCACATAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03651 | -116 | 5.2 | AAAAGTGATTTAGATCACACAT |
| -63 | 3.7 | TATTGTTAGCTACATAATAAAC | ||
| Enterobacter sp. 638 | Ent638_3679 | -165 | 5.4 | AAAAGTGATTTAGATCACATAT |
| Yersinia pestis KIM | y0179 | -269 | 5.2 | AAAAGTGATTTAGATCACACAT |
| Serratia proteamaculans 568 | Spro_4392 | -293 | 5.1 | AAAAGTGATTTAGATCACAGAT |
| -89 | 3.8 | ATTTGTGGTGCGTGTCAGCTAA | ||
|
Position: -37
Score: 5.3 Sequence: TTATGTGATCTAAATCACTTTT
Locus tag: SSPA3020
|
||||
| SSPA3020 | -37 | 5.3 | TTATGTGATCTAAATCACTTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aaeR | ||||
| Ortholog function: LysR-family transcriptional regulator | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3243 | -37 | 5.3 | TTATGTGATCTAAATCACTTTT |
| Salmonella typhimurium LT2 | STM3367 | -37 | 5.3 | TTATGTGATCTAAATCACTTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_04651 | -37 | 5.3 | ATATGTGATCTAAATCACTTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03652 | -55 | 5.1 | ATGTGTGATCTAAATCACTTTT |
| Enterobacter sp. 638 | Ent638_3680 | -37 | 5.3 | ATATGTGATCTAAATCACTTTT |
| Erwinia amylovora ATCC 49946 | EAM_3128 | -37 | 5.3 | AAATGTGATCTAAATCACTTTT |
| Yersinia pestis KIM | y0180 | -55 | 5.1 | ATGTGTGATCTAAATCACTTTT |
| Serratia proteamaculans 568 | Spro_4393 | -37 | 4.9 | ATCTGTGATCTAAATCACTTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0276 | -37 | 5.1 | TAGTGTGATCTAAATCACTTTT |
| Edwardsiella tarda EIB202 | ETAE_3129 | -131 | 4.5 | ATCTGTGACGCAAATCACTTTT |
|
Position: -222
Score: 4.3 Sequence: TTGTGTGAAGTGATTCACATCC
Locus tag: SSPA3045
|
||||
| SSPA3045 | -222 | 4.3 | TTGTGTGAAGTGATTCACATCC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yrdA | ||||
| Ortholog function: carbonic anhydrase, family 3 | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3279 | -220 | 3.8 | TCCTGTGAAGTGTTTCACGTTG |
| Salmonella typhimurium LT2 | STM3399 | -222 | 4.3 | TTGTGTGAAGTGATTCACATCC |
| Citrobacter koseri ATCC BAA-895 | CKO_04691 | -221 | 3.9 | TCTTGTGAAGCGTTTCACTTTG |
| -81 | 3.8 | ATTTTTGATACCTGAAACACTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03680 | -221 | 4.6 | TTGTGTGAAGTGATTCACATCT |
| Enterobacter sp. 638 | Ent638_3711 | -222 | 4.6 | TTGTGTGAAGTGATTCACATCT |
| -47 | 3.6 | TAATGCGATCAAAGTCTTCTAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3993 | -105 | 3.6 | TTACTCGATCCGTGTCACTTTT |
| Edwardsiella tarda EIB202 | ETAE_3192 | -235 | 4.1 | TCCTGTGATGTTGTTCACATGT |
|
Position: -188
Score: 3.9 Sequence: TAATGTGATGTCCTCTGCATAC
Locus tag: SSPA3109
|
||||
| SSPA3109 | -188 | 3.9 | TAATGTGATGTCCTCTGCATAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhfA | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3356 | -187 | 4.2 | TAATGTGACGTCCTTTGCATAC |
| Salmonella typhimurium LT2 | STM3465 | -188 | 3.9 | TAATGTGATGTCCTCTGCATAC |
| Citrobacter koseri ATCC BAA-895 | CKO_04775 | -187 | 3.3 | GAATGTGATGTCCTCTGCATAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03742 | -188 | 3.5 | TAATGTGAACTCCTCTGCATAC |
| Serratia proteamaculans 568 | Spro_4579 | -280 | 3.3 | GGTTTTGAGGCGTGTCATAAAT |
|
Position: -159
Score: 3.1 Sequence: TACATTGACGTACTGCATGTAT
Locus tag: SSPA3110
|
||||
| SSPA3110 | -159 | 3.1 | TACATTGACGTACTGCATGTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: crp | ||||
| Ortholog function: cyclic AMP receptor protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3357 | -154 | 3.3 | TACATTGATGTACTGCATGTAT |
| -136 | 3.3 | GTATGCAAAGGACGTCACATTA | ||
| Salmonella typhimurium LT2 | STM3466 | -159 | 3.1 | TACATTGACGTACTGCATGTAT |
| Citrobacter koseri ATCC BAA-895 | CKO_04777 | -160 | 3.1 | TACATTGACGTACTGCATGTAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03743 | -158 | 3.3 | TACATTGATGTACTGCATGTAT |
| Enterobacter sp. 638 | Ent638_3784 | -128 | 2.9 | AAACATTACAGGCTGCAAACAT |
| Yersinia pestis KIM | y3956 | -309 | 3 | AATTTAGACTACCCTTTCATTT |
| Serratia proteamaculans 568 | Spro_4580 | -121 | 3.5 | ATTTATGACACGCCTCAAAACC |
| Proteus mirabilis HI4320 | PMI2820 | -135 | 3.3 | TATTATAATCTATTCCTTATTA |
|
Position: -214
Score: 4.4 Sequence: TTTTGTGATGTATTTAAATAAT
Position: -161
Score: 5.1 Sequence: TAATGTGATGTTTGTCACATCA
Locus tag: SSPA3116
|
||||
| SSPA3116 | -214 | 4.4 | TTTTGTGATGTATTTAAATAAT | |
| -161 | 5.1 | TAATGTGATGTTTGTCACATCA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ppiA | ||||
| Ortholog function: Peptidyl-prolyl cis-trans isomerase ppiA precursor (EC 5.2.1.8) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3363 | -204 | 4.2 | TTTTGTGATCTGTTTAAATGTT |
| -151 | 4.2 | AGAGGTGATTTTGATCACGGAA | ||
| Salmonella typhimurium LT2 | STM3472 | -214 | 4.3 | TTTTGTGATGCATTTAAATAAT |
| -161 | 5.1 | TAATGTGATGTTTGTCACATCA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04785 | -215 | 3.7 | TTTAGTGATGTATTTAAATGTT |
| -162 | 5.2 | TAACGTGACATTGATCACATTA | ||
|
Position: -137
Score: 5 Sequence: TGATGTGACAAACATCACATTA
Locus tag: SSPA3117
|
||||
| SSPA3117 | -137 | 5 | TGATGTGACAAACATCACATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhfC | ||||
| Ortholog function: Predicted purine nucleoside transporter, MFS superfamily | ||||
| Salmonella typhimurium LT2 | STM3473 | -137 | 5 | TGATGTGACAAACATCACATTA |
| -84 | 3.8 | ATTATTTAAATGCATCACAAAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03750 | -140 | 5.3 | AAGCGTGATGCAGATCACATTA |
| -109 | 3.7 | AAAGATAACCCATTTCACAATA | ||
| Enterobacter sp. 638 | Ent638_3791 | -206 | 4.8 | AAAAGTGACTTAGATCACATTG |
| Serratia proteamaculans 568 | Spro_2681 | -82 | 4.3 | AATTGTGAACCCGATCACTTCA |
|
Position: -76
Score: 3.4 Sequence: GAATTTGATTTACATCAATAAG
Locus tag: SSPA3118
|
||||
| SSPA3118 | -76 | 3.4 | GAATTTGATTTACATCAATAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nirB | ||||
| Ortholog function: nitrite reductase (NAD(P)H) subunit | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3365 | -124 | 3.2 | AAAATTTATACAAATCAGCAAT |
| -76 | 3.4 | GAATTTGATTTACATCAATAAG | ||
| Salmonella typhimurium LT2 | STM3474 | -76 | 3.4 | GAATTTGATTTACATCAATAAG |
| Citrobacter koseri ATCC BAA-895 | CKO_04789 | -76 | 3.4 | GAATTTGATTTACATCAATAAG |
| Enterobacter sp. 638 | Ent638_3793 | -76 | 3.3 | GTATTTGATTTGCATCAATAAG |
| Yersinia pestis KIM | y3945 | -75 | 3.7 | CAAATTGATTTACATCAAGAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4079 | -186 | 4.2 | AAGCGTGCTATAGATCTCACTT |
| Proteus mirabilis HI4320 | PMI1479 | -129 | 3.5 | TTTTGTGCACTTTATTAACAAT |
|
Position: -165
Score: 3.4 Sequence: TTTTGTATTTTTTTTCATTTTA
Position: -150
Score: 4.1 Sequence: CATTTTAATTGTTATCACAAAA
Position: -144
Score: 3.6 Sequence: AATTGTTATCACAAAATCATTT
Locus tag: SSPA3120
|
||||
| SSPA3120 | -165 | 3.4 | TTTTGTATTTTTTTTCATTTTA | |
| -150 | 4.1 | CATTTTAATTGTTATCACAAAA | ||
| -144 | 3.6 | AATTGTTATCACAAAATCATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nirC | ||||
| Ortholog function: nitrite transporter NirC | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3367 | -124 | 3.2 | AAAATTTATACAAATCAGCAAT |
| -76 | 3.4 | GAATTTGATTTACATCAATAAG | ||
| Enterobacter sp. 638 | Ent638_3795 | -76 | 3.3 | GTATTTGATTTGCATCAATAAG |
|
Position: -21
Score: 3.5 Sequence: AACCGTGCGGTATGTCGCACAA
Locus tag: SSPA3134
|
||||
| SSPA3134 | -21 | 3.5 | AACCGTGCGGTATGTCGCACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nudE | ||||
| Ortholog function: ADP compounds hydrolase NudE (EC 3.6.1.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3397 | -53 | 3.7 | AAGCGTGTCCGATATCGCACAA |
| Citrobacter koseri ATCC BAA-895 | CKO_04820 | -54 | 4.1 | AACCGTGCTGTATATCGCACAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03768 | -54 | 4 | AAGCGTGTTGCGTATCGCACAA |
| Enterobacter sp. 638 | Ent638_3810 | -55 | 3.6 | AACCGTGCGTCATATCGCACAA |
| Yersinia pestis KIM | y3923 | -247 | 4.5 | CAATGTGATCAAGTTCTAATAT |
| Serratia proteamaculans 568 | Spro_4612 | -135 | 4.4 | CAATGTGATCAAGATCGGATTT |
| Edwardsiella tarda EIB202 | ETAE_3268 | -116 | 3.6 | AAATATGAGCATCTGCGCACAA |
|
Position: -238
Score: 3.6 Sequence: TTATGTAACGTAATAAAAATTA
Locus tag: SSPA3135
|
||||
| SSPA3135 | -238 | 3.6 | TTATGTAACGTAATAAAAATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: igaA | ||||
| Ortholog function: IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3398 | -288 | 3.6 | TTGTGCGATATCGGACACGCTT |
| -123 | 3.8 | TACTGTGATGTGCTTAATGATG | ||
| Salmonella typhimurium LT2 | STM3495 | -238 | 3.6 | TTATGTAACGTAATAAAAATTA |
| Citrobacter koseri ATCC BAA-895 | CKO_04821 | -290 | 3.9 | TTGTGCGATATACAGCACGGTT |
| -238 | 3.7 | TTATGTAACGTAGTAAAAATTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03769 | -282 | 3.8 | TTGTGCGATACGCAACACGCTT |
| Enterobacter sp. 638 | Ent638_3811 | -287 | 3.7 | TTGTGCGATATGACGCACGGTT |
| Yersinia pestis KIM | y3922 | -186 | 3.7 | TATTGTGACTGCGTTAGCTTTG |
|
Position: -241
Score: 4 Sequence: GAATGCGATTACAGTCACATTA
Position: -107
Score: 3.9 Sequence: AATCGTGATTTTGTCCAGATAC
Locus tag: SSPA3140
|
||||
| SSPA3140 | -241 | 4 | GAATGCGATTACAGTCACATTA | |
| -107 | 3.9 | AATCGTGATTTTGTCCAGATAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pck | ||||
| Ortholog function: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3403 | -240 | 4.2 | GAATGCGATTCCACTCACAATA |
| -137 | 4 | TTTCGTGACAGGAATCACGGAG | ||
| Salmonella typhimurium LT2 | STM3500 | -241 | 4 | GAATGCGATTACAGTCACATTA |
| -107 | 3.9 | AATCGTGATTTTGTCCAGATAC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04825 | -107 | 3.9 | AATCGTGATTTTGTCCAGATAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03773 | -242 | 3.7 | GAAAGCGATTACATTCACATTT |
| -138 | 3.7 | CTTCGTGACAGGAGTCACCGTT | ||
| Enterobacter sp. 638 | Ent638_3816 | -241 | 4.1 | GTATGCGATTACATTCACATTA |
| Yersinia pestis KIM | y3918 | -130 | 4.2 | ATTCGTGTTCCATCTCTCATAA |
| -80 | 3.8 | ATATTTGATAGCTATCGCTGTT | ||
| Serratia proteamaculans 568 | Spro_4617 | -80 | 4.1 | ATATTTGATACCTATCGCGGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4106 | -81 | 4 | TTTTATGATTGCTATCGCGGTT |
| Edwardsiella tarda EIB202 | ETAE_3277 | -82 | 3.9 | TTTTTTGATGACTATCTCGGTT |
| Proteus mirabilis HI4320 | PMI3015 | -131 | 4 | ATTTGTGCATTAGTTCTCGTTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0100 | -86 | 3.8 | TTTTTTGATAACTATCGCTGTT |
|
Position: -284
Score: 4.1 Sequence: TAACATGACCTGTGTCTCATAA
Locus tag: SSPA3152
|
||||
| SSPA3152 | -284 | 4.1 | TAACATGACCTGTGTCTCATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gntT | ||||
| Ortholog function: gluconate transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3415 | -236 | 4.3 | TAATATGACCAACCTCTCATAA |
| Salmonella typhimurium LT2 | STM3512 | -236 | 4.1 | TAACATGACCTGTGTCTCATAA |
| -178 | 3.8 | ATATGTTACCCGTATCATTCTT | ||
| -37 | 3.2 | TGACGTTACCCATAACAAAGTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04836 | -236 | 4.2 | TAACATGACCTGCCTCTCATAA |
| -178 | 3.8 | ATATGTTACCCGTATCATTCAT | ||
|
Position: -143
Score: 4.3 Sequence: AATTGTGACAGAGTGCAAATTC
Locus tag: SSPA3155
|
||||
| SSPA3155 | -143 | 4.3 | AATTGTGACAGAGTGCAAATTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malT | ||||
| Ortholog function: transcriptional regulator MalT | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3418 | -142 | 4.3 | AATTGTGACACAGTGCAAATTC |
| Salmonella typhimurium LT2 | STM3515 | -143 | 4.3 | AATTGTGACAGAGTGCAAATTC |
| Citrobacter koseri ATCC BAA-895 | CKO_04840 | -142 | 4.3 | AATTGTGACAGAGTGCAAATTC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03788 | -142 | 4.4 | ATTTGTGACATAGAGCAAATTC |
| Enterobacter sp. 638 | Ent638_3831 | -142 | 4.6 | AATTGTGACAGAGTGCAAATTA |
| Yersinia pestis KIM | y3900 | -202 | 4.6 | AATTGTGATCCGTAGCAACTTA |
| Serratia proteamaculans 568 | Spro_4637 | -203 | 4 | AAGTGTGATCAATAGCAATATA |
| Edwardsiella tarda EIB202 | ETAE_3303 | -212 | 3.8 | AAATGTGATCAGCCGCAATTTC |
|
Position: -104
Score: 4.7 Sequence: TAGAGTGATATGTATAACATTA
Locus tag: SSPA3158
|
||||
| SSPA3158 | -104 | 4.7 | TAGAGTGATATGTATAACATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpE | ||||
| Ortholog function: thiosulfate sulfurtransferase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3425 | -95 | 4.7 | TAGAGTGATATGTATAACATTA |
| Salmonella typhimurium LT2 | STM3525 | -104 | 4.7 | TAGAGTGATATGTATAACATTA |
| Citrobacter koseri ATCC BAA-895 | CKO_04844 | -108 | 4.6 | TAGAGTGATACATATAACATTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03791 | -107 | 4.3 | TGAAGTGATGGGTGTAACATAT |
| Enterobacter sp. 638 | Ent638_3834 | -257 | 3.8 | ATGTTCGATATCGCTCATAATA |
| -196 | 4.6 | TTGAGTGATAGAGATAACATAA | ||
| Erwinia amylovora ATCC 49946 | EAM_3264 | -134 | 3.9 | ATGCGTGATGCCGATAACGTCT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0197 | -102 | 3.6 | TAACGTATTACTGATAACAAAT |
|
Position: -116
Score: 4.4 Sequence: TAATGTTATACATATCACTCTA
Locus tag: SSPA3159
|
||||
| SSPA3159 | -116 | 4.4 | TAATGTTATACATATCACTCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpD | ||||
| Ortholog function: glycerol-3-phosphate dehydrogenase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3426 | -116 | 4.4 | TAATGTTATACATATCACTCTA |
| Salmonella typhimurium LT2 | STM3526 | -116 | 4.4 | TAATGTTATACATATCACTCTA |
| Citrobacter koseri ATCC BAA-895 | CKO_04845 | -116 | 4.5 | TAATGTTATATGTATCACTCTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03792 | -119 | 3.7 | ATATGTTACACCCATCACTTCA |
| -58 | 3.7 | TATAGTGAGCGATATCGAGCAT | ||
| Enterobacter sp. 638 | Ent638_3835 | -116 | 4.4 | TTATGTTATCTCTATCACTCAA |
| -55 | 4 | TATTATGAGCGATATCGAACAT | ||
| Erwinia amylovora ATCC 49946 | EAM_3265 | -124 | 4 | AGACGTTATCGGCATCACGCAT |
| Yersinia pestis KIM | y3891 | -129 | 4.4 | AAATGTTACCTCCATCACGCAT |
| Serratia proteamaculans 568 | Spro_4642 | -129 | 3.6 | AACTGTTACCTCTATCACGCCT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4141 | -144 | 4.3 | TAATGTGACAACTATCATCATA |
| -124 | 4.4 | TATTGTTAGCTTCATCACGCAT | ||
| Edwardsiella tarda EIB202 | ETAE_3312 | -124 | 4.3 | TTGTGTTATCCGCATCGCGTAA |
| Proteus mirabilis HI4320 | PMI2930 | -129 | 4.4 | AATTGTTATTTATATCACGCAG |
|
Position: -132
Score: 4.4 Sequence: AACTTTGAAGTAGCTCACACTT
Locus tag: SSPA3168
|
||||
| SSPA3168 | -132 | 4.4 | AACTTTGAAGTAGCTCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gntK | ||||
| Ortholog function: gluconate kinase 1 | ||||
| Salmonella typhimurium LT2 | STM3542 | -132 | 4.4 | AACTTTGAAGTAGCTCACACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_04991 | -121 | 3.8 | TTATGTGAACGGAATCCCCATC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03896 | -62 | 4 | ATATGCAAACAACATCACAATT |
| Yersinia pestis KIM | y3829 | -211 | 3.9 | AGATGTGAGCCATATAACCTCT |
| Serratia proteamaculans 568 | Spro_0141 | -271 | 3.8 | TTGTTTGCTGTTTCTCACAGTC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0303 | -223 | 3.7 | AAATGTGCGCATTGTCATGTTT |
|
Position: -184
Score: 3.5 Sequence: AGACGTGCAGTAGCTCCCACTT
Locus tag: SSPA3182
|
||||
| SSPA3182 | -184 | 3.5 | AGACGTGCAGTAGCTCCCACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ugpB | ||||
| Ortholog function: Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3453 | -182 | 3.6 | ATCCGTGCCCCATCTCCCATTT |
| Salmonella typhimurium LT2 | STM3557 | -184 | 3.5 | ATCCGTGCCGTAGCTCCCACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_04874 | -185 | 3.3 | TATTTTTCTGTCATTCGCGCAT |
| -162 | 3.2 | TCATGTTACCTCGCGAGCATAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03813 | -88 | 3.4 | TATTTTTCTGTAATTCGAACAT |
| Enterobacter sp. 638 | Ent638_3856 | -162 | 3.5 | AGTTATTATTCCCGCCACATTA |
| -58 | 3.2 | TCATGTTACCTCGCGAGCATAA | ||
| Erwinia amylovora ATCC 49946 | EAM_3285 | -171 | 3.9 | GTGTGTGATGCCGTTAACACAG |
| Yersinia pestis KIM | y0434 | -72 | 3.5 | AAAACTGATTTATTTCGCTCAT |
| -41 | 4.1 | TTTTTTGATGTGAGCCACACAG | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2429 | -145 | 3.5 | TATCGCGATACAGTTCATCACT |
| Edwardsiella tarda EIB202 | ETAE_3321 | -63 | 3.4 | CAATATGTTGTTTATCACTCAA |
|
Position: -154
Score: 4.2 Sequence: TTATGTGAAGCATTTCATAGAC
Locus tag: SSPA3236
|
||||
| SSPA3236 | -154 | 4.2 | TTATGTGAAGCATTTCATAGAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhjE | ||||
| Ortholog function: Inner membrane metabolite transport protein YhjE | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3523 | -155 | 4.5 | TTATGTGAAGCATTTCATAGAA |
| Salmonella typhimurium LT2 | STM3609 | -154 | 4.2 | TTATGTGAAGCATTTCATAGAC |
| Citrobacter koseri ATCC BAA-895 | CKO_04963 | -155 | 4 | TTGTGTGAAGCATTTCATAGAC |
| -94 | 3.7 | TTATTTGAGCGAAATCCCGCTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03874 | -154 | 4.3 | TTGTGTGAAGCATTTCATAGAA |
| Enterobacter sp. 638 | Ent638_3920 | -155 | 4.2 | AACTGTGAAGCATTTCATAGAA |
| Erwinia amylovora ATCC 49946 | EAM_3376 | -134 | 3.6 | AAATATGCCGTATTGAACATTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0769 | -222 | 4.7 | AATTGTGTGCGATCTCACATAT |
|
Position: -145
Score: 4.1 Sequence: TTGTGCGAGCCAGCTCAAACTT
Locus tag: SSPA3240
|
||||
| SSPA3240 | -145 | 4.1 | TTGTGCGAGCCAGCTCAAACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dctA | ||||
| Ortholog function: C4-dicarboxylate transport protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3528 | -143 | 4.1 | TTGTGCGAGCCAGCTCAAACTT |
| Salmonella typhimurium LT2 | STM3614 | -145 | 4.1 | TTGTGCGAGCCAGCTCAAACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_04970 | -145 | 4 | TTGTGCGAGCCAGCTCAAAGTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03878 | -143 | 3.9 | TTGTGCGAGTCAGCTCAAAGAT |
| Erwinia amylovora ATCC 49946 | EAM_3380 | -134 | 4.4 | TGAAGTGATTCAGCTCATAAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4362 | -157 | 3.8 | TGACGTGATTCAGCTCTTGTTT |
| Edwardsiella tarda EIB202 | ETAE_3379 | -155 | 3.6 | TTATGCGTTTCAGCTCATAGAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3205 | -176 | 4.9 | TTATGTGATCTATATCTTAAAA |
|
Position: -306
Score: 3.7 Sequence: TTTCCTGATTTATTGCTCAATT
Position: -251
Score: 4.4 Sequence: AAATGTGCGCTGGCTCTCAAAA
Position: -249
Score: 3.7 Sequence: ATGTGCGCTGGCTCTCAAAAAA
Position: -124
Score: 4.5 Sequence: TGCTGTGATGAATTTCGCATAA
Position: 0
Score: 4 Sequence: ATGTTTGATAAACGTCACCGTA
Locus tag: SSPA3280
|
||||
| SSPA3280 | -306 | 3.7 | TTTCCTGATTTATTGCTCAATT | |
| -251 | 4.4 | AAATGTGCGCTGGCTCTCAAAA | ||
| -249 | 3.7 | ATGTGCGCTGGCTCTCAAAAAA | ||
| -124 | 4.5 | TGCTGTGATGAATTTCGCATAA | ||
| 0 | 4 | ATGTTTGATAAACGTCACCGTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: xylR | ||||
| Ortholog function: Xylose activator XylR (AraC family) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3569 | -253 | 4.2 | AAGTGTGCGCTCGCTCGCAAAA |
| -163 | 3.7 | AAGTAAGATCTCGGTCATAAAT | ||
| Salmonella typhimurium LT2 | STM3662 | -251 | 4.8 | AAATGTGCTCTGGCTCTCAAAA |
| -124 | 4.5 | TGCTGTGATGAATTTCGCATAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_05026 | -254 | 4.1 | AAGTGTGCGCCGCCTCGCAAAA |
| -162 | 3.8 | AAGTACGATCTCGGTCATAATT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03933 | -234 | 3.8 | AAATACGATCGCCGTCATAATT |
| Enterobacter sp. 638 | Ent638_0152 | -264 | 3.9 | AAACGTGCGCTGGCTCCCAAAA |
| Yersinia pestis KIM | y4053 | -264 | 4.8 | AATTGTGGTGTAGATCTCATAA |
| -160 | 4.2 | AAACATGATCGTTATCATAAAA | ||
| Serratia proteamaculans 568 | Spro_0102 | -259 | 4.4 | AAATGTGCGACAGATCTCATAA |
| -166 | 3.7 | AAGCATGACCGCCATCATAAAA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0101 | -272 | 4.5 | AAATATGACCCGCATCAAAAAA |
| Proteus mirabilis HI4320 | PMI1276 | -93 | 4.9 | TTGTGTGATAGTAATCACATAG |
|
Position: -148
Score: 3.8 Sequence: AAATGCGGCGTTTATCGCAAAT
Locus tag: SSPA3282
|
||||
| SSPA3282 | -148 | 3.8 | AAATGCGGCGTTTATCGCAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malS | ||||
| Ortholog function: periplasmic alpha-amylase precursor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3571 | -269 | 4.2 | ATTTGAGAGTTGAATCTCAAAT |
| -152 | 4.1 | AAATGTGGGGGTTATCGCAAAA | ||
| -118 | 3.6 | TTGCGCGAGATCGCTCACCCTT | ||
| Salmonella typhimurium LT2 | STM3664 | -148 | 4.5 | AAATGTGGTGCTTATCGCAAAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03935 | -146 | 3.7 | AAATGCTAGCTTCGTCTCATTT |
| Enterobacter sp. 638 | Ent638_0150 | -264 | 4.2 | AATTGAGAGCGGAATCTCAAAT |
| -147 | 4.1 | AATTGTGTGCGATATCGCAGAT | ||
| -117 | 3.8 | AATTTTGCGCGAGATCACTCAT | ||
| Serratia proteamaculans 568 | Spro_0054 | -163 | 4 | CATTGTAATATAGATTAAAAAA |
|
Position: -64
Score: 4.4 Sequence: TATCGTGAACTGCAACACACTT
Locus tag: SSPA3285
|
||||
| SSPA3285 | -64 | 4.4 | TATCGTGAACTGCAACACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yiaJ | ||||
| Ortholog function: Hypothetical transcriptional regulator yiaJ, IclR family | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3574 | -47 | 3.7 | GATCGTGAACTACGGCACACTT |
| Salmonella typhimurium LT2 | STM3667 | -64 | 4.4 | TATCGTGAACTGCAACACACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_05032 | -63 | 3.8 | GATCGTGAACTGAAACACACTT |
|
Position: -187
Score: 4.5 Sequence: AAGTGTGTTGCAGTTCACGATA
Locus tag: SSPA3286
|
||||
| SSPA3286 | -187 | 4.5 | AAGTGTGTTGCAGTTCACGATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yiaK | ||||
| Ortholog function: 3-dehydro-L-gulonate 2-dehydrogenase (EC 1.1.1.130) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3575 | -175 | 4.1 | AAGTGTGCCGTAGTTCACGATC |
| Salmonella typhimurium LT2 | STM3668 | -187 | 4.5 | AAGTGTGTTGCAGTTCACGATA |
| Citrobacter koseri ATCC BAA-895 | CKO_05033 | -177 | 4.1 | AAGTGTGTTTCAGTTCACGATC |
| Serratia proteamaculans 568 | Spro_3933 | -182 | 4.8 | AAACGTGTTGTCGATCACAAAT |
|
Position: -324
Score: 4.7 Sequence: TCTTGTGAAGAGGATCACAAAA
Position: -280
Score: 5.3 Sequence: AAATGTGAAATATCTCACATAA
Position: -207
Score: 4.8 Sequence: CTTTGTGATCAATATCACATCA
Position: -163
Score: 5.4 Sequence: TTATGTGACGCAAATCACATAA
Locus tag: SSPA3302
|
||||
| SSPA3302 | -324 | 4.7 | TCTTGTGAAGAGGATCACAAAA | |
| -280 | 5.3 | AAATGTGAAATATCTCACATAA | ||
| -207 | 4.8 | CTTTGTGATCAATATCACATCA | ||
| -163 | 5.4 | TTATGTGACGCAAATCACATAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtlA | ||||
| Ortholog function: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3599 | -206 | 4.5 | TTTTGTGATGAACGTCACGTCA |
| -162 | 5.4 | TTATGTGATTGATATCACACAA | ||
| -113 | 3.3 | TTCAGTGCCAGATTTCGCAGTA | ||
| Salmonella typhimurium LT2 | STM3685 | -207 | 4.8 | CTTTGTGATCAATATCACATCA |
| -163 | 5.4 | TTATGTGACGCAAATCACATAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_05054 | -203 | 5.2 | TTTTGTGATCAATATCACATCA |
| -159 | 5 | TCATGTGATCCAAATCACACAA | ||
| -110 | 3.4 | TTCAGTGCCAGATTTCGCACTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03942 | -208 | 4.9 | TTTTGTGATCATCATCACTAAA |
| -164 | 5.2 | TCATGTGATCCAAATCACATAA | ||
| -115 | 3.4 | TTCAGTGCCAGATTTCGCACTA | ||
| Enterobacter sp. 638 | Ent638_0136 | -224 | 3.4 | TATTTTTTTCATACTCTCATTT |
| -205 | 4.8 | TTTTGTGATGGCGATCACCTCA | ||
| -161 | 5.1 | TTGCGTGATGCAGATCACACAA | ||
| Erwinia amylovora ATCC 49946 | EAM_3416 | -229 | 3.3 | CATTGCGAATATCTTTACACTT |
| -210 | 3.9 | CTTCGTGACTCATGTCACTAAA | ||
| -166 | 4.8 | TTAAGTGACCCGCATCACACTT | ||
| -95 | 3.2 | CGTTTTGATCGTGATCCCTCAA | ||
| -34 | 3.5 | ACATGAGATTTGCATCATTAAT | ||
| Yersinia pestis KIM | y4087 | -223 | 4.6 | AGATGTGATCTTAATCAACAAA |
| -179 | 4.5 | TTGTGTGACTTTCGTCACGAAA | ||
| Serratia proteamaculans 568 | Spro_0072 | -195 | 5.2 | AAATGTGATGTATATCACTATA |
| -151 | 4.5 | GTTGGTGATCTGCATCACAAAA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0087 | -230 | 5.1 | TTTTGTGAAGTAAATCACCTAT |
| -186 | 4.5 | TTGTGTGATTTTTGTCACGTTG | ||
|
Position: -147
Score: 3.8 Sequence: TTTATTGATATTTATAATAAAT
Position: -58
Score: 4.9 Sequence: AATCGTGATACAGCGCACAAAT
Locus tag: SSPA3353
|
||||
| SSPA3353 | -147 | 3.8 | TTTATTGATATTTATAATAAAT | |
| -58 | 4.9 | AATCGTGATACAGCGCACAAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yicG | ||||
| Ortholog function: Putative inner membrane protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3646 | -58 | 4.4 | AATCGTGACAATGCGCACAAAT |
| Salmonella typhimurium LT2 | STM3738 | -210 | 3.7 | TTAAATTATCTAAGTCAAAATA |
| -147 | 3.8 | TTTATTGATATTTATAATAAAT | ||
| -58 | 4.9 | AATCGTGATACAGCGCACAAAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_05103 | -58 | 4.7 | AATCGTGATATTACGCACAAAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03994 | -55 | 4.9 | AATCGTGATCCTGCGCACAAAT |
| Enterobacter sp. 638 | Ent638_0094 | -55 | 3.9 | AATCGTGATATGTTCTGCAAAA |
| Edwardsiella tarda EIB202 | ETAE_0032 | -180 | 3.8 | AAAACTAATCTATATCAAATAT |
|
Position: -124
Score: 4.5 Sequence: CTATGTGATTTTCATCTAATAT
Position: -94
Score: 4.2 Sequence: TTTTGCGATATGGTTCATTTTA
Locus tag: SSPA3409
|
||||
| SSPA3409 | -124 | 4.5 | CTATGTGATTTTCATCTAATAT | |
| -94 | 4.2 | TTTTGCGATATGGTTCATTTTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dsdC | ||||
| Ortholog function: DNA-binding transcriptional dual regulator | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2364 | -115 | 3.9 | TGGAGTGATTTACATCTAAAAA |
| -85 | 4.6 | AATTGAGATATGGTTCACTTTA | ||
| Salmonella typhimurium LT2 | STM3800 | -142 | 3.8 | TGATGTAAATTGAATCAACTAT |
| -124 | 4.5 | CTATGTGATTTCCATCTAATAT | ||
| -94 | 4.2 | TTTTGCGATATGGTTCATTTTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00019 | -32 | 3.9 | AAGGGTGATTTGCATCCAATAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04079 | -125 | 3.9 | AAAGGTGATTTAGCTCTAAAAG |
| -95 | 4.2 | AAATATGCTATGGGTCAAATTA | ||
| Serratia proteamaculans 568 | Spro_2451 | -76 | 3.6 | TTTAGCGACATGGGTCAACTTT |
| Proteus mirabilis HI4320 | PMI0184 | -199 | 3.6 | TATTGTTAAACATATTGAATAT |
| -117 | 4.4 | ATAGGTGATCAGATGCACAAAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1968 | -124 | 4.4 | TTCAGTGATACCGATCAAAATT |
| -94 | 4.5 | ATTTGCGATTTAAATCACTAAA | ||
|
Position: -153
Score: 4 Sequence: TAAAATGAACCATATCGCAAAA
Position: -123
Score: 4.1 Sequence: ATATTAGATGAAAATCACATAG
Locus tag: SSPA3410
|
||||
| SSPA3410 | -153 | 4 | TAAAATGAACCATATCGCAAAA | |
| -123 | 4.1 | ATATTAGATGAAAATCACATAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dsdX | ||||
| Ortholog function: DsdX permease | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2365 | -154 | 4.4 | TAAAGTGAACCATATCTCAATT |
| Salmonella typhimurium LT2 | STM3801 | -153 | 4 | TAAAATGAACCATATCGCAAAA |
| -123 | 4.2 | ATATTAGATGGAAATCACATAG | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00020 | -124 | 4 | TTATTGGATGCAAATCACCCTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04080 | -152 | 4.3 | TAATTTGACCCATAGCATATTT |
| -122 | 3.7 | CTTTTAGAGCTAAATCACCTTT | ||
|
Position: -262
Score: 4.6 Sequence: ATGTGTGATCTGGTGCACGCTT
Position: -211
Score: 4.1 Sequence: TTTTGTACGATCGTTCACACTT
Locus tag: SSPA3466
|
||||
| SSPA3466 | -262 | 4.6 | ATGTGTGATCTGGTGCACGCTT | |
| -211 | 4.1 | TTTTGTACGATCGTTCACACTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpI | ||||
| Ortholog function: ATP synthase subunit I | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3739 | -263 | 4.8 | ATATGTGATCTGAAGCACGCTT |
| Salmonella typhimurium LT2 | STM3872 | -262 | 4.6 | ATGTGTGATCTGGTGCACGCTT |
| -211 | 4.1 | TTTTGTACGATCGTTCACACTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00079 | -262 | 4.7 | ATATGTGATCCGAAGCACGCTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04144 | -262 | 4.7 | TTATGTGATCTGATGCACGCTT |
| Enterobacter sp. 638 | Ent638_4125 | -261 | 4.8 | TTTTGTGATCTCGTGCACGCTT |
| Erwinia amylovora ATCC 49946 | EAM_3481 | -264 | 4.4 | ATTTGTGATCGTGGACACGCTT |
| Yersinia pestis KIM | y4142 | -263 | 5.4 | TTATGTGATGTATTTCACGTTT |
| Serratia proteamaculans 568 | Spro_0001 | -265 | 4.4 | TATTGTGAGCAACTACACGTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4519 | -254 | 5 | TTATGTGAGTCACATCACAGAT |
| Edwardsiella tarda EIB202 | ETAE_3526 | -297 | 3.7 | AATCGTGAAAATATTTAAATTA |
| Proteus mirabilis HI4320 | PMI3057 | -259 | 5 | TTGTGTGTTCTAGATCACATTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0047 | -265 | 5.7 | TTATGTGATTTAAATCACATTT |
|
Position: -234
Score: 4.2 Sequence: AAACGTGATCAATTTAACACCT
Locus tag: SSPA3518
|
||||
| SSPA3518 | -234 | 4.2 | AAACGTGATCAATTTAACACCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hemC | ||||
| Ortholog function: porphobilinogen deaminase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3805 | -236 | 4.2 | AAACGTGATCAATTTAACACCT |
| Salmonella typhimurium LT2 | STM3938 | -219 | 4.2 | AAACGTGATCAATTTAACACCT |
| Citrobacter koseri ATCC BAA-895 | CKO_00147 | -220 | 4.2 | AAACGTGATCAATTTAACACCT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04304 | -232 | 4.2 | AAACGTGATCAATTTAACACCT |
| Enterobacter sp. 638 | Ent638_3987 | -211 | 4.2 | AAACGTGATCAATCTAACACCT |
| Serratia proteamaculans 568 | Spro_0178 | -223 | 4.2 | AAACGTGATCAATCTAACACCT |
| Edwardsiella tarda EIB202 | ETAE_0118 | -205 | 4.2 | AAACGTGATCAATTTAACACCT |
|
Position: -164
Score: 4 Sequence: AGGTGTTAAATTGATCACGTTT
Locus tag: SSPA3519
|
||||
| SSPA3519 | -164 | 4 | AGGTGTTAAATTGATCACGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyaA | ||||
| Ortholog function: Adenylate cyclase (EC 4.6.1.1) | ||||
| Salmonella typhimurium LT2 | STM3939 | -164 | 4 | AGGTGTTAAATTGATCACGTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_00148 | -174 | 4 | AGGTGTTAAATTGATCACGTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04305 | -147 | 4 | AGGTGTTAAATTGATCACGTTT |
|
Position: -144
Score: 5.2 Sequence: TATTGTGATGCGCATCACTTTT
Locus tag: SSPA3547
|
||||
| SSPA3547 | -144 | 5.2 | TATTGTGATGCGCATCACTTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: udp | ||||
| Ortholog function: Uridine phosphorylase (EC 2.4.2.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3831 | -144 | 5.2 | TTATGTGATTTGCATCACTTTT |
| -92 | 4.2 | CATGGTGATGAGTATCACGAAA | ||
| Salmonella typhimurium LT2 | STM3968 | -144 | 5.1 | TATTGTGATGAACATCACTTTT |
| -92 | 4.1 | CATAGTGATGGCTGTCACGAAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00173 | -143 | 5.2 | TTATGTGATGTAAATCACTATT |
| -91 | 3.9 | CATGGTGATGAGCGTCACGAAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04327 | -143 | 5.2 | TAATGTGATGTGTATCACTATT |
| -91 | 4.1 | CTTGGTGACTATCATCACAAAA | ||
| Enterobacter sp. 638 | Ent638_3962 | -143 | 4.7 | TAGTGTGATGCATGTCACTATT |
| Erwinia amylovora ATCC 49946 | EAM_0200 | -143 | 4.6 | AATTGCGACTTGTATCACCTTT |
| -90 | 4 | ATTAAGGATGTTCATCACATAA | ||
| Yersinia pestis KIM | y0444 | -149 | 5.4 | ATGTGTGATTTAAATCACAATT |
| -97 | 4 | CAAGGTGACATAAATCACGAAA | ||
| Serratia proteamaculans 568 | Spro_0244 | -143 | 5.3 | TTTTGTGACTTTAATCACAAAA |
| -125 | 3.7 | AAAAGTTATGTAGATTGCATTC | ||
| -91 | 4.1 | CATAGTGATGGTTGTCACGAAA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0185 | -197 | 5.1 | AAAAGTGATTTAAGTCACATTT |
| Edwardsiella tarda EIB202 | ETAE_0143 | -148 | 4.7 | TATTGTGAAAATAATCACAGTT |
| Proteus mirabilis HI4320 | PMI3532 | -145 | 5.1 | ATTTGTGATAACTATCACGTTT |
| -93 | 3.6 | ACAGGTGACGTCAATCACTAAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4417 | -271 | 5.2 | TTTTGTGATTTATATCTCAAAA |
| -219 | 4 | TGAAGTGACATTTATCACTAAA | ||
|
Position: -272
Score: 4.2 Sequence: CTTTGTGATCGCTTTCACGGAG
Locus tag: SSPA3578
|
||||
| SSPA3578 | -272 | 4.2 | CTTTGTGATCGCTTTCACGGAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnA | ||||
| Ortholog function: glutamine synthetase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3870 | -269 | 4.2 | CTTTGTGATCGCTTTCACGGAG |
| Salmonella typhimurium LT2 | STM4007 | -272 | 4.2 | CTTTGTGATCGCTTTCACGGAG |
| -114 | 3.8 | CAATGTGAAAGTTGGCACAGAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03140 | -250 | 4.2 | CTTTGTGATCGCTTTCACGGAG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04178 | -299 | 3.9 | CTTTGTGACCGCTTTCACGGAG |
| Serratia proteamaculans 568 | Spro_4881 | -267 | 4 | GTATGTGATCCCTTTCACGGTG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0029 | -265 | 4.2 | CTTTGTGATCCCTTTCACGGTG |
| Edwardsiella tarda EIB202 | ETAE_3493 | -267 | 4.2 | GTTTGTGATCCTATTCACGATG |
| Proteus mirabilis HI4320 | PMI2882 | -270 | 4.7 | AATTGTGATCCTTTTCACGCCT |
| -215 | 3.8 | AATTGTGCAACTATTCAGACTT | ||
| -181 | 3.9 | ATTTGTGCAATAATTAAAAAAT | ||
|
Position: -127
Score: 4.1 Sequence: AACTGTGAACGCTATCACGTTC
Locus tag: SSPA3618
|
||||
| SSPA3618 | -127 | 4.1 | AACTGTGAACGCTATCACGTTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rhaB | ||||
| Ortholog function: rhamnulokinase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3904 | -162 | 3.8 | AAATGCGGTGAGCATCACATCA |
| -127 | 4.4 | AATTGTGAACATCATCACGTTC | ||
| Salmonella typhimurium LT2 | STM4047 | -247 | 3.9 | AAGGGTTATCGGCCTCACCTTA |
| -127 | 4.1 | AACTGTGAACGCTATCACGTTC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03100 | -182 | 4.5 | AATTGTGAACGCTATCACGTTC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04213 | -128 | 4.2 | AACTGTGATGTCCCTCACGGTC |
| Enterobacter sp. 638 | Ent638_4067 | -129 | 4.2 | AACTGTGAACTCCCTCACGTTC |
| Yersinia pestis KIM | y0587 | -234 | 4.2 | AACTGTGAGCTGTTTCACTTTC |
|
Position: -182
Score: 4.3 Sequence: GAACGTGATAGCGTTCACAGTT
Position: -147
Score: 4 Sequence: CGGTGTGATGTCGTCCGCATTT
Position: -62
Score: 3.8 Sequence: TAAGGTGAGGCCGATAACCCTT
Locus tag: SSPA3619
|
||||
| SSPA3619 | -182 | 4.3 | GAACGTGATAGCGTTCACAGTT | |
| -147 | 4 | CGGTGTGATGTCGTCCGCATTT | ||
| -62 | 3.8 | TAAGGTGAGGCCGATAACCCTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rhaS | ||||
| Ortholog function: L-rhamnose operon regulatory protein RhaS | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3905 | -182 | 4.5 | GAACGTGATGATGTTCACAATT |
| -147 | 4.5 | TGATGTGATGCTCACCGCATTT | ||
| Salmonella typhimurium LT2 | STM4048 | -182 | 4.3 | GAACGTGATAGCGTTCACAGTT |
| -147 | 4 | CGGTGTGATGTCGTCCGCATTT | ||
| -62 | 3.8 | TAAGGTGAGGCCGATAACCCTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03099 | -194 | 4.5 | GAACGTGATAGCGTTCACAATT |
| -34 | 4.3 | ATTTCTGACATGTTTCTCATAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04214 | -204 | 3.8 | GACCGTGAGGGACATCACAGTT |
| Enterobacter sp. 638 | Ent638_4066 | -194 | 4.2 | GAACGTGAGGGAGTTCACAGTT |
| Yersinia pestis KIM | y0590 | -214 | 3.9 | GAAAGTGAAACAGCTCACAGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0441 | -144 | 3.9 | CGGTGTGATCCTTGCCACACTT |
|
Position: -293
Score: 3.9 Sequence: TTATGTGATCTCACGCAGCGTT
Position: -149
Score: 3.9 Sequence: AAACGTGAAGTTAATCACTTCA
Locus tag: SSPA3621
|
||||
| SSPA3621 | -293 | 3.9 | TTATGTGATCTCACGCAGCGTT | |
| -149 | 3.9 | AAACGTGAAGTTAATCACTTCA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rhaT | ||||
| Ortholog function: L-rhamnose-proton symport | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3907 | -145 | 4.1 | AGATGTGAAGCAAATCACCCAC |
| Salmonella typhimurium LT2 | STM4050 | -293 | 3.6 | TTATGTGACCTCACGCAGCGTT |
| -149 | 3.9 | AAACGTGAAGTTAATCACTTCA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03094 | -148 | 4.1 | ATATGTGAGCCAAATCACCCGT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04216 | -149 | 4.7 | TTTTGTGATGTAGAACAACTAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0450 | -193 | 3.6 | TTTTGTGATCCTGCCTATATCA |
|
Position: -161
Score: 3.6 Sequence: AACTCTCATCCAGATCACGTTT
Position: -92
Score: 4 Sequence: TTTTGTGGCGTTAATCACGGTT
Locus tag: SSPA3644
|
||||
| SSPA3644 | -161 | 3.6 | AACTCTCATCCAGATCACGTTT | |
| -92 | 4 | TTTTGTGGCGTTAATCACGGTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lsrR | ||||
| Ortholog function: LsrR, transcriptional repressor of lsr operon | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1512 | -87 | 4.1 | AACTGTGGTTGCCATCACAGAT |
| Salmonella typhimurium LT2 | STM4073 | -161 | 3.6 | AACTCTCATCCAGATCACGTTT |
| -92 | 4 | TTTTGTGGCGTTAATCACGGTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03508 | -75 | 3.7 | TTTTGCCAGTCGGCTCACACTT |
| Enterobacter sp. 638 | Ent638_3537 | -122 | 3.4 | TTTATTGATTAGGATCCAATTC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3142 | -137 | 4.3 | AATTGTGATCTTGGCAATATTT |
|
Position: -147
Score: 3.9 Sequence: TTTATTGACGCAGTACACACAT
Locus tag: SSPA3657
|
||||
| SSPA3657 | -147 | 3.9 | TTTATTGACGCAGTACACACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpF | ||||
| Ortholog function: facilitator for glycerol uptake | ||||
| Salmonella typhimurium LT2 | STM4087 | -147 | 3.9 | TTTATTGACGCAGTACACACAT |
|
Position: -66
Score: 3.9 Sequence: TAATGTATTTTTATTCATAATT
Locus tag: SSPA3684
|
||||
| SSPA3684 | -66 | 3.9 | TAATGTATTTTTATTCATAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argE | ||||
| Ortholog function: acetylornithine deacetylase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3957 | -66 | 3.7 | TAGTGTATTTTTATTCATAAAT |
| Salmonella typhimurium LT2 | STM4120 | -66 | 3.9 | TAATGTATTTTTATTCATAATT |
| Citrobacter koseri ATCC BAA-895 | CKO_03037 | -27 | 4.3 | TAATGTATTTTTATTCACAAAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04246 | -27 | 4 | TATTGTATTTTTATTCAAAATA |
| Enterobacter sp. 638 | Ent638_4029 | -66 | 4.2 | TAGTGTATTTTTATTCACATTT |
| Erwinia amylovora ATCC 49946 | EAM_0137 | -66 | 3.8 | TATTGTATTTTTATTCACTATT |
| Yersinia pestis KIM | y0309 | -223 | 3.6 | TATTTTTATTTATGTCAATAAA |
| Serratia proteamaculans 568 | Spro_4782 | -71 | 4.3 | TATTGTATTTTTATTCACAATA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0191 | -65 | 4 | TATTGTATTTTTATTCAAAATA |
| Edwardsiella tarda EIB202 | ETAE_3483 | -65 | 3.9 | TATTGTATTTTTATTCATAATT |
| Proteus mirabilis HI4320 | PMI3236 | -65 | 3.9 | TAATGTATTTTTATTCAAAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4745 | -65 | 3.9 | TAATGTATTTTTATTCAAAAAA |
|
Position: -44
Score: 3.5 Sequence: AATTATGAATAAAAATACATTA
Locus tag: SSPA3685
|
||||
| SSPA3685 | -44 | 3.5 | AATTATGAATAAAAATACATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argC | ||||
| Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) | ||||
| Salmonella typhimurium LT2 | STM4121 | -44 | 3.5 | AATTATGAATAAAAATACATTA |
| Citrobacter koseri ATCC BAA-895 | CKO_03036 | -110 | 4 | ATTTGTGAATAAAAATACATTA |
| Enterobacter sp. 638 | Ent638_4028 | -44 | 3.8 | AAATGTGAATAAAAATACACTA |
| Yersinia pestis KIM | y0310 | -43 | 3.7 | TTTATTGACATAAATAAAAATA |
| Serratia proteamaculans 568 | Spro_4781 | -167 | 4 | TATTGTGAATAAAAATACAATA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0192 | -159 | 3.5 | TATTTTGAATAAAAATACAATA |
| Edwardsiella tarda EIB202 | ETAE_3482 | -160 | 3.4 | AATTATGAATAAAAATACAATA |
| Proteus mirabilis HI4320 | PMI3237 | -57 | 3.6 | TTTTTTGAATAAAAATACATTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4744 | -59 | 3.6 | TTTTTTGAATAAAAATACATTA |
|
Position: -61
Score: 3.7 Sequence: TTCTGTGACTGGCGTTACAATC
Locus tag: SSPA3747
|
||||
| SSPA3747 | -61 | 3.7 | TTCTGTGACTGGCGTTACAATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pgi | ||||
| Ortholog function: Glucose-6-phosphate isomerase (EC 5.3.1.9) | ||||
| Salmonella typhimurium LT2 | STM4221 | -61 | 3.7 | TTCTGTGACTGGCGTTACAATC |
| Citrobacter koseri ATCC BAA-895 | CKO_03893 | -61 | 4.1 | TTTTGTGACTGGCGTTACAATC |
| Serratia proteamaculans 568 | Spro_4477 | -80 | 3.7 | AAAAGAGATCATAATCACAGTC |
| Proteus mirabilis HI4320 | PMI2754 | -245 | 3.7 | CAGTGAGATGTTAAACACAGTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4379 | -205 | 3.8 | TGACGCGATGAGAATCATAAAA |
|
Position: -192
Score: 4.3 Sequence: TTTCGTGATGCCGCCCGCAAAA
Position: -129
Score: 4.3 Sequence: TTATGCAACACAGATCACATAA
Locus tag: SSPA3755
|
||||
| SSPA3755 | -192 | 4.3 | TTTCGTGATGCCGCCCGCAAAA | |
| -129 | 4.3 | TTATGCAACACAGATCACATAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malE | ||||
| Ortholog function: maltose ABC transporter periplasmic protein | ||||
| Salmonella typhimurium LT2 | STM4229 | -192 | 4.3 | TTTCGTGATGCCGCCCGCAAAA |
| -160 | 3.6 | TTTTGTGTGCGCCAGCACGCAT | ||
| -158 | 3.8 | TTGTGTGCGCCAGCACGCATTA | ||
| -129 | 4.3 | TTATGCAACACAGATCACATAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03881 | -193 | 3.7 | TTTCGTGATGTCACCTGCAAAA |
| -159 | 3.9 | TTATGTGCGCCAACACGCATTA | ||
| -130 | 4.3 | TTATGCAACACAGATCACATAA | ||
|
Position: -254
Score: 4.7 Sequence: TTATGTGATCTGTGTTGCATAA
Locus tag: SSPA3756
|
||||
| SSPA3756 | -254 | 4.7 | TTATGTGATCTGTGTTGCATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malK | ||||
| Ortholog function: maltose/maltodextrin transporter ATP-binding protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4035 | -254 | 4.4 | TTGTGTGATCTCTGTTACAGAA |
| -225 | 3.9 | TAATGTGGAGATGCGCACATAA | ||
| -191 | 3.7 | TTTTGCAAGCAACATCACGAAA | ||
| Salmonella typhimurium LT2 | STM4230 | -254 | 4.7 | TTATGTGATCTGTGTTGCATAA |
| -225 | 3.6 | TAATGCGTGCTGGCGCACACAA | ||
| -223 | 3.8 | ATGCGTGCTGGCGCACACAAAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03880 | -254 | 4.7 | TTATGTGATCTGTGTTGCATAA |
| -225 | 3.7 | TAATGCGTGTTGGCGCACATAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04424 | -254 | 4.5 | TTGTGTGATCTCCATTGCAAAA |
| -225 | 3.7 | TATTGCGTCCTGGAGCACAGAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0457 | -250 | 4 | GGGTGTGATCTCTATTACAAAA |
| -221 | 3.8 | AAGCGTGCCGTTGCCCACAAAA | ||
| -187 | 4.9 | TTTTGCGATAAATATCACAATT | ||
|
Position: -139
Score: 3.7 Sequence: TGTTGTGATCATCCTCTTTTTT
Locus tag: SSPA3775
|
||||
| SSPA3775 | -139 | 3.7 | TGTTGTGATCATCCTCTTTTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aphA | ||||
| Ortholog function: acid phosphatase/phosphotransferase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4055 | -130 | 3.6 | CATCCTGCTTTTCATCACAAAA |
| -57 | 4 | TTTTGCAACAAATCTCACAATA | ||
| Salmonella typhimurium LT2 | STM4249 | -139 | 3.7 | TGTTGTGATCATCCTCTTTTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_03845 | -255 | 3.9 | TATTGTGAATGCGTGTACAGAA |
| -224 | 3.7 | GTGTGTGTGGTTTATCACACAT | ||
| Enterobacter sp. 638 | Ent638_0259 | -57 | 3.8 | TTTTTTGACCATTCGCTCAATT |
| Edwardsiella tarda EIB202 | ETAE_3469 | -150 | 5 | TTTTGTGATGAATGTCACGTAT |
| -98 | 3.7 | AACATAGATCATGATCACATTA | ||
| Proteus mirabilis HI4320 | PMI0729 | -148 | 4.3 | AAGTGTTAGATAGATCAAAAAA |
| -87 | 4.3 | TAACGTGCGCTATATCTCATTT | ||
| -34 | 4.3 | TTCTGTGATTAATATAAAAATT | ||
|
Position: -149
Score: 5.7 Sequence: TTTTGTGATATAGTTCACAAAA
Locus tag: SSPA3788
|
||||
| SSPA3788 | -149 | 5.7 | TTTTGTGATATAGTTCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yjcB | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4060 | -149 | 5.7 | AATTGTGATATAGTTCACAAAA |
| Salmonella typhimurium LT2 | STM4263 | -149 | 5.7 | TTTTGTGATATAGTTCACAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03830 | -150 | 5.7 | TATTGTGATATAGTTCACAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04460 | -143 | 5.4 | AAGTGTGATATAGTTCACACAA |
| Enterobacter sp. 638 | Ent638_0263 | -82 | 5.3 | AAACGTGATATAGTTCACACAT |
| Serratia proteamaculans 568 | Spro_2355 | -81 | 5 | CAATGTGACGCAGATCACACTA |
|
Position: -100
Score: 4.1 Sequence: TTGCGTGATCTGTCGCCCAAAT
Locus tag: SSPA3799
|
||||
| SSPA3799 | -100 | 4.1 | TTGCGTGATCTGTCGCCCAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acs | ||||
| Ortholog function: acetyl-coenzyme A synthetase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4069 | -100 | 4.1 | TTGCGTGATCTGTCGCCCAAAT |
| Salmonella typhimurium LT2 | STM4275 | -100 | 4.1 | TTGCGTGATCTGTCGCCCAAAT |
| Citrobacter koseri ATCC BAA-895 | CKO_03816 | -101 | 4.3 | TTGCGTGATCTGCCGCGCAAAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04478 | -101 | 3.9 | TTGCGTGATCTGCCCCCCAATT |
| Enterobacter sp. 638 | Ent638_0276 | -101 | 4.1 | TTGCGTGATCTGTCGCCCAAAT |
| Yersinia pestis KIM | y0510 | -97 | 4.2 | ATACGTGATCTGCCGCCCAAAA |
| Serratia proteamaculans 568 | Spro_0297 | -97 | 4 | TTGCGTGATCTGCCGCCCAAAA |
| Proteus mirabilis HI4320 | PMI3037 | -97 | 4.5 | TTTCGTGATCTTATGCGCAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0074 | -98 | 4.2 | TTGCGTGATCTTCCGCGCAAAA |
|
Position: -235
Score: 5.2 Sequence: ATGTGTGAAGTTGATCACATAT
Locus tag: SSPA3815
|
||||
| SSPA3815 | -235 | 5.2 | ATGTGTGAAGTTGATCACATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: proP | ||||
| Ortholog function: L-Proline/Glycine betaine transporter ProP | ||||
| Salmonella typhimurium LT2 | STM4290 | -235 | 5.2 | ATGTGTGAAGTTGATCACATAT |
| Serratia proteamaculans 568 | Spro_1860 | -132 | 5.1 | TTACGTGATTCGCATCACACAA |
|
Position: -53
Score: 3.5 Sequence: GGCTGTGATCCATTTATCAAAA
Position: -2
Score: 3.5 Sequence: AAATGTTATTTAGTATACAGCT
Locus tag: SSPA3826
|
||||
| SSPA3826 | -53 | 3.5 | GGCTGTGATCCATTTATCAAAA | |
| -2 | 3.5 | AAATGTTATTTAGTATACAGCT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dcuB | ||||
| Ortholog function: C4-dicarboxylate transporter DcuB | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4123 | -53 | 3.5 | GACTGTGATCTATTCAGCAAAA |
| Salmonella typhimurium LT2 | STM4301 | -53 | 3.5 | GGCTGTGATCCATTTATCAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03748 | -52 | 3.9 | GACTGTGATCTATTTATCAAAA |
| Enterobacter sp. 638 | Ent638_2479 | -81 | 3.3 | AAATCTGATCTGGCTCCCAGCC |
| Serratia proteamaculans 568 | Spro_3863 | -77 | 3.6 | GTTTGTGATCGCTATCCCTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1533 | -296 | 3.5 | TATTGCGAGCGAGATCTTTTAT |
| -247 | 3.5 | TTAATAGATTTAGATCAAGAAA | ||
| Edwardsiella tarda EIB202 | ETAE_2844 | -194 | 3.6 | ATACTTTATTCAGATCAATTTT |
| Proteus mirabilis HI4320 | PMI0389 | -138 | 3.3 | AACTATAACAACGATCAAAAAA |
|
Position: -121
Score: 3.9 Sequence: TAATATGATAGTTGTCGAACTT
Locus tag: SSPA3845
|
||||
| SSPA3845 | -121 | 3.9 | TAATATGATAGTTGTCGAACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dcuA | ||||
| Ortholog function: anaerobic C-4-dicarboxylate symporter | ||||
| Salmonella typhimurium LT2 | STM4325 | -209 | 4.2 | AGCGGTGACCTATTTCACAAAA |
| -159 | 4.2 | TTAAGTGATCCAGATTACGGTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03697 | -54 | 4.2 | AGCGGTGACCTATTTCACAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04528 | -204 | 3.9 | AGCGGTGACCCATTTCACAGAT |
| -154 | 3.8 | ATAAGTGATCAAGCTTACTGAT | ||
| Enterobacter sp. 638 | Ent638_0325 | -205 | 4.1 | AGCGGTGATTCATTTCACAGAT |
| Erwinia amylovora ATCC 49946 | EAM_0415 | -228 | 4.2 | CAATGTGACCTGGAACAGATAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0620 | -272 | 4 | ACTCGTGACTACAATCACAGTT |
|
Position: -153
Score: 4.1 Sequence: TTTTGTGAAATAGGTCACCGCT
Position: -92
Score: 4.3 Sequence: AATTTTGCTACGCATCACCATA
Locus tag: SSPA3848
|
||||
| SSPA3848 | -153 | 4.1 | TTTTGTGAAATAGGTCACCGCT | |
| -92 | 4.3 | AATTTTGCTACGCATCACCATA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fxsA | ||||
| Ortholog function: suppressor of F plamsid exlusion of phage T7 | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4140 | -202 | 4.1 | TACCGTAATCTGGATCACTTTA |
| -152 | 4.3 | ATTTGTGAAATAGATCACCGCT | ||
| Salmonella typhimurium LT2 | STM4327 | -203 | 4.1 | TACCGTAATCTGGATCACTTAA |
| -153 | 4.1 | TTTTGTGAAATAGGTCACCGCT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03695 | -156 | 4.1 | TTTTGTGAAATAGGTCACCGCT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04530 | -140 | 3.7 | ATCTGTGAAATGGGTCACCGCT |
| Enterobacter sp. 638 | Ent638_0327 | -151 | 3.8 | ATCTGTGAAATGAATCACCGCT |
| Erwinia amylovora ATCC 49946 | EAM_0417 | -161 | 3.9 | ATATCTGTTCCAGGTCACATTG |
| Yersinia pestis KIM | y0607 | -245 | 4.8 | ATCTGTGATTGCTCTCACACTT |
| Serratia proteamaculans 568 | Spro_0407 | -117 | 4.9 | TTCTGTGATCTCATTCACGTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0623 | -245 | 3.7 | AACTGTGATTGTAGTCACGAGT |
| -185 | 3.6 | AAATGTGCAAAGGCGCACCCAT | ||
| Edwardsiella tarda EIB202 | ETAE_0312 | -189 | 4.6 | ATCTGTGATAATACTCACAGAT |
| Proteus mirabilis HI4320 | PMI2545 | -188 | 4.7 | TTTTGTGATCTATCTCATGGAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4136 | -188 | 5.6 | ATATGTGATATTTATCACAATT |
|
Position: -89
Score: 4.2 Sequence: ATTTGCGCGCTACGTCACATTT
Locus tag: SSPA3900
|
||||
| SSPA3900 | -89 | 4.2 | ATTTGCGCGCTACGTCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ulaA | ||||
| Ortholog function: Ascorbate-specific PTS system, EIIC component | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4193 | -124 | 3.8 | ATTTGCGGGTCGCGTCACATTT |
| -87 | 3.8 | TGTTGTGATTACTTTTGAAAAT | ||
| Salmonella typhimurium LT2 | STM4383.S | -122 | 3.9 | ATTTGCGCGCTACGTCACAGTT |
| -85 | 3.8 | TGTTGTGATTACTTTTGAAAAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03643 | -124 | 3.9 | ATTTGCGTGGTGCGTCACAATT |
| -87 | 3.8 | TGTTGTGATTACTTTTGAAAAT | ||
|
Position: -193
Score: 5.1 Sequence: TTTTGTGAGCTAATTCGCATTA
Locus tag: SSPA3915
|
||||
| SSPA3915 | -193 | 5.1 | TTTTGTGAGCTAATTCGCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cycA2 | ||||
| Ortholog function: D-alanine/D-serine/glycine permease | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4208 | -198 | 4.7 | TTTTGTGAGCTGTTTCGCGTTA |
| Salmonella typhimurium LT2 | STM4398 | -193 | 5.1 | TTTTGTGAGCTAATTCGCATTA |
| -170 | 3.9 | CAAAGTGATATAACACTCATTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03624 | -199 | 4.4 | TTTTGTGAGCTAATTCGCGTTG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04601 | -192 | 4.7 | TTTTGTGAGCTATTTCGCGTTA |
| -169 | 3.8 | ATGAGTGATATAACACTCACTT | ||
| Enterobacter sp. 638 | Ent638_0378 | -201 | 4.2 | TTTTGTGAGCTGTTTTGCATTG |
| Yersinia pestis KIM | y2447 | -199 | 4.5 | CACTGTGATGTACTTAACAAAA |
| -118 | 3.7 | TAATATTAAATTATTCGCAAAT | ||
| Proteus mirabilis HI4320 | PMI1614 | -102 | 4.4 | TTCTGAGATTTGTGTCACAATA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1965 | -102 | 4.6 | TATAGTAATCTGTGTCACAATA |
|
Position: -144
Score: 3.7 Sequence: TTCTGTGAACACTCGCAAAAAA
Locus tag: SSPA3921
|
||||
| SSPA3921 | -144 | 3.7 | TTCTGTGAACACTCGCAAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cpdB | ||||
| Ortholog function: 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4213 | -118 | 3.8 | AACTGTGATAGTGTCATCATTT |
| -85 | 3.8 | AATTGTGGCATTCTTCACTGTT | ||
| Salmonella typhimurium LT2 | STM4403 | -145 | 3.7 | TTCTGTGAACACTCGCAAAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03616 | -25 | 4.2 | TTTTGTGTTTCAGATCTAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04607 | -156 | 3.8 | TTGTTTTATTTATATCGCATCA |
| -87 | 3.7 | TTTTCTGGCAAGATTCACATTT | ||
| -35 | 4.2 | TTCTGTGCTATCGCTCATAAAA | ||
| Enterobacter sp. 638 | Ent638_0392 | -34 | 4 | TTTTGTGGCTTGGATCGAAAAA |
| Yersinia pestis KIM | y0653 | -148 | 3.6 | AACTGTGAGCGTCTACGCGTTA |
| -116 | 3.8 | TTTTCTGCCAAACTTCACACTT | ||
| -63 | 4.4 | TTTTGCGATACATATCGAATAT | ||
| Serratia proteamaculans 568 | Spro_0453 | -95 | 3.8 | TTTTCTGCCACACTTCACAGTT |
|
Position: -144
Score: 3.9 Sequence: TTTTTTGCGAGTGTTCACAGAA
Locus tag: SSPA3922
|
||||
| SSPA3922 | -144 | 3.9 | TTTTTTGCGAGTGTTCACAGAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cysQ | ||||
| Ortholog function: PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4214 | -126 | 3.6 | AACAGTGAAGAATGCCACAATT |
| Salmonella typhimurium LT2 | STM4404 | -144 | 3.9 | TTTTTTGCGAGTGTTCACAGAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03615 | -178 | 4.1 | TTTTTAGATCTGAAACACAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04608 | -178 | 4.1 | TTTTATGAGCGATAGCACAGAA |
| -126 | 3.7 | AAATGTGAATCTTGCCAGAAAA | ||
| -57 | 3.9 | TGATGCGATATAAATAAAACAA | ||
| Enterobacter sp. 638 | Ent638_0393 | -167 | 3.9 | TTTTTCGATCCAAGCCACAAAA |
| Erwinia amylovora ATCC 49946 | EAM_0455 | -158 | 4.2 | AAATGTGACACAGCACGAATAA |
| Serratia proteamaculans 568 | Spro_0454 | -180 | 3.7 | AACTGTGAAGTGTGGCAGAAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3601 | -258 | 3.7 | TAAAGTGATTATCGTCTCTAAA |
|
Position: -229
Score: 4.8 Sequence: AAATGTAATACCCATCACACTT
Position: -162
Score: 3.8 Sequence: TGCCGCGATAGATCTCACACTT
Position: -111
Score: 4.1 Sequence: TTCTGTGGCGCAGATCACCTAT
Locus tag: SSPA3938
|
||||
| SSPA3938 | -229 | 4.8 | AAATGTAATACCCATCACACTT | |
| -162 | 3.8 | TGCCGCGATAGATCTCACACTT | ||
| -111 | 4.1 | TTCTGTGGCGCAGATCACCTAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: CKO_03591 | ||||
| Ortholog function: hypothetical protein | ||||
| Salmonella typhimurium LT2 | STM4440 | -229 | 4.5 | AACTGTAATACCCATCACACTT |
| -162 | 3.8 | TGCCGCGATAGATCTCACACTT | ||
| -111 | 4.1 | TTCTGTGGCGCAGATCACCTAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04633 | -172 | 4.3 | TGTTGTGATACATCTCACGCCA |
| -121 | 4.2 | ATATGTGGAGTCGATCACCTAA | ||
| Enterobacter sp. 638 | Ent638_0424 | -265 | 3.8 | AAACCTTATCCGCGTCACACTT |
| -189 | 4.6 | TAGCGTGATATTCATCACGCAA | ||
| Erwinia amylovora ATCC 49946 | EAM_0469 | -156 | 3.8 | TGATGTGAGTTGTCTCGCTTTG |
|
Position: -108
Score: 3.9 Sequence: ATTTGTGATCTTCGCCGTGTTT
Locus tag: SSPA3953
|
||||
| SSPA3953 | -108 | 3.9 | ATTTGTGATCTTCGCCGTGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: treB | ||||
| Ortholog function: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4240 | -101 | 3.8 | AATTGTGATCTTCGCTGCGTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_03571 | -156 | 3.8 | ATTTGTGATCTTCGCTGCGTTT |
| Enterobacter sp. 638 | Ent638_0439 | -106 | 4 | TATTGTGATCTTCACCCGATTT |
| Serratia proteamaculans 568 | Spro_0529 | -124 | 3.8 | TTTTGTGATCCTCGCCCCAAAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3288 | -127 | 4.3 | CAATGTGATCTTCAACCCATTT |
|
Position: -81
Score: 4.3 Sequence: CAGCGTGACATAAGTCACAAAT
Locus tag: SSPA3981
|
||||
| SSPA3981 | -81 | 4.3 | CAGCGTGACATAAGTCACAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: idnD | ||||
| Ortholog function: L-idonate 5-dehydrogenase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4267 | -81 | 5.1 | TGACGTGATCTTCATCACAAAT |
| Salmonella typhimurium LT2 | STM4484 | -81 | 4.3 | CAGCGTGACATAAGTCACAAAT |
|
Position: -157
Score: 4.4 Sequence: ATTTGTGACTTATGTCACGCTG
Locus tag: SSPA3982
|
||||
| SSPA3982 | -157 | 4.4 | ATTTGTGACTTATGTCACGCTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: idnK | ||||
| Ortholog function: D-gluconate kinase, thermosensitive | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4268 | -157 | 4.8 | ATTTGTGATGAAGATCACGTCA |
| -107 | 4 | TAACGTGATGTGCCTTGTAATT | ||
| Salmonella typhimurium LT2 | STM4485 | -157 | 4.4 | ATTTGTGACTTATGTCACGCTG |
| -107 | 3.9 | TAACGTGATGTGCCTTAGAGTT | ||
|
Position: -229
Score: 5.4 Sequence: TATCGTGATCTCAATCACATAA
Locus tag: SSPA4042
|
||||
| SSPA4042 | -229 | 5.4 | TATCGTGATCTCAATCACATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cstA2 | ||||
| Ortholog function: Carbon starvation protein A paralog | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4354 | -231 | 5.7 | ATATGTGATATGAATCACATAT |
| Salmonella typhimurium LT2 | STM4532 | -229 | 5.4 | TATCGTGATCTCAATCACATAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03443 | -228 | 5.2 | ATTAGTGATCTCAATCACATAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04776 | -231 | 5.2 | TATTGTGAGCTTAATCACACAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1187 | -57 | 3.7 | TATTTTTCTACAGCTAACAAAA |
| Proteus mirabilis HI4320 | PMI0142 | -279 | 3.6 | ATTTTTTATGTAATTAATAGTT |
| -234 | 5.2 | ATTTGTTATCTCGATCACAAAA | ||
|
Position: -268
Score: 4.4 Sequence: AATTGTGATCTATATTTAACAA
Locus tag: SSPA4061
|
||||
| SSPA4061 | -268 | 4.4 | AATTGTGATCTATATTTAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: osmY | ||||
| Ortholog function: Osmotically inducible protein OsmY | ||||
| Salmonella typhimurium LT2 | STM4561 | -268 | 4.4 | AATTGTGATCTATATTTAACAA |
|
Position: -183
Score: 3.7 Sequence: CACTTCGATATACATCACAGTT
Position: -130
Score: 4.8 Sequence: TAATGAGATCTGAATCAAATTA
Locus tag: SSPA4065
|
||||
| SSPA4065 | -183 | 3.7 | CACTTCGATATACATCACAGTT | |
| -130 | 4.8 | TAATGAGATCTGAATCAAATTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yjjI | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4380 | -183 | 3.9 | CACTTCGATACACATCACAATT |
| -130 | 5 | TAATGCGATCTGGTTCAAATAA | ||
| Salmonella typhimurium LT2 | STM4566 | -183 | 3.7 | CACTTCGATATACATCACAGTT |
| -130 | 4.8 | TAATGAGATCTGAATCAAATTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03411 | -75 | 3.7 | CACTTCGATATACATCACAGTT |
| -22 | 4.4 | TAACGAGATCCACTTCAAATAA | ||
| Enterobacter sp. 638 | Ent638_0540 | -133 | 4.7 | TAATGAGATCCACTTCAAATTT |
| Proteus mirabilis HI4320 | PMI2509 | -159 | 3.7 | TTATTTTAGATATATCTAATTT |
|
Position: -133
Score: 4.9 Sequence: TAATTTGATTCAGATCTCATTA
Position: -80
Score: 4.2 Sequence: AACTGTGATGTATATCGAAGTG
Locus tag: SSPA4066
|
||||
| SSPA4066 | -133 | 4.9 | TAATTTGATTCAGATCTCATTA | |
| -80 | 4.2 | AACTGTGATGTATATCGAAGTG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: deoC | ||||
| Ortholog function: 2-deoxyribose-5-phosphate aldolase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4381 | -149 | 4.6 | TTATTTGAACCAGATCGCATTA |
| -96 | 4.5 | AATTGTGATGTGTATCGAAGTG | ||
| Salmonella typhimurium LT2 | STM4567 | -133 | 4.9 | TAATTTGATTCAGATCTCATTA |
| -80 | 4.2 | AACTGTGATGTATATCGAAGTG | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03410 | -134 | 4.2 | TTATTTGAAGTGGATCTCGTTA |
| -81 | 4.2 | AACTGTGATGTATATCGAAGTG | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04837 | -158 | 5.2 | ATTTGTGATTTTAATCACGTTA |
| -105 | 3.7 | AACTGTGATGAATGTCGAAGTG | ||
| Enterobacter sp. 638 | Ent638_0541 | -151 | 4.6 | AAATTTGAAGTGGATCTCATTA |
| -98 | 3.7 | AACTGTGATGAATGTCGAAGTG | ||
| Erwinia amylovora ATCC 49946 | EAM_0615 | -233 | 4.6 | TGATGTGATAATTCTAACATTA |
| Yersinia pestis KIM | y3743 | -169 | 3.7 | TGCGGTGAGATGGATCTCAATT |
| Serratia proteamaculans 568 | Spro_0660 | -262 | 4.6 | ATTTGTGAACGATATCGCGTTA |
| -240 | 5.5 | TTTTGTGATGGTCTTCACATAT | ||
| -188 | 3.8 | TAGTGTGACTGTGAACGCGAAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0727 | -282 | 4.4 | AAGTGTGAATGAATGCACAAAA |
| Proteus mirabilis HI4320 | PMI2416 | -267 | 4.4 | ATATGTGAGTTACTTCGCAACT |
| -135 | 5.6 | TTTTGTGATTCTGATCACAATT | ||
| -83 | 4.5 | TATTGTGACAGAAAGCACATCT | ||
|
Position: -97
Score: 3.6 Sequence: TTCAGTGATATCCGTTAAAATT
Locus tag: SSPA4093
|
||||
| SSPA4093 | -97 | 3.6 | TTCAGTGATATCCGTTAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yjtD | ||||
| Ortholog function: RNA methyltransferase, TrmH family, group 1 | ||||
| Salmonella typhimurium LT2 | STM4600 | -97 | 3.6 | TTCAGTGATATCAGTTAAAATT |
| Citrobacter koseri ATCC BAA-895 | CKO_03386 | -222 | 3.7 | AGGTGTGATTCATTCTAAATTA |
| -53 | 4.2 | TATGTTGACATTGGTCACATTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04857 | -94 | 4 | TTTAGTGATTTTTGTTGCAAAT |
| Enterobacter sp. 638 | Ent638_0563 | -54 | 4.3 | TATGTTGAGGTGGATCACACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3892 | -83 | 3.7 | AATCGTGATCGATTACACGTCC |