Propagation of KdgR regulog to Enterobacter cancerogenus ATCC 35316
| Source regulog: | KdgR - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | IclR |
| Regulation mode: | repressor (activator) |
| Biological process: | Pectin and polygalacturonate utlization |
| Effector: | 2-keto-3-deoxygluconate |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Enterobacter cancerogenus ATCC 35316 |
| Orthologous TF(s) | ENTCAN_02736 |
| Regulated genes | 15 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -136
Score: 5.1 Sequence: TTTTAAACCGTCGTTTCATTA
Position: -49
Score: 5.2 Sequence: AAATAAAACACCGTTTTAACG
Locus tag: ENTCAN_00178
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| ENTCAN_00178 | -136 | 5.1 | TTTTAAACCGTCGTTTCATTA | |
| -49 | 5.2 | AAATAAAACACCGTTTTAACG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rhiA | ||||
| Ortholog function: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04899 | -138 | 5.1 | TTTTAAACCATCGTTTCAATT |
| -50 | 4.8 | AACTAAAACAATGTTTTAACG | ||
| Enterobacter sp. 638 | Ent638_3876 | -134 | 4.5 | TTTCAAACCATCGTTTCAAAA |
| -49 | 4.8 | AACTAAAACAACGTTTTAACG | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0357 | -239 | 5.6 | ATATAAAACAGCATTTCATAT |
|
Position: -84
Score: 5.3 Sequence: TAATGGAACGACGTTTTAATA
Locus tag: ENTCAN_00226
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| ENTCAN_00226 | -84 | 5.3 | TAATGGAACGACGTTTTAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgK | ||||
| Ortholog function: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) | ||||
| Enterobacter sp. 638 | Ent638_3923 | -84 | 5.1 | TTATGGAACGACGTTTTAATA |
|
Position: -229
Score: 5.7 Sequence: AACTAAAACACTGTTTTATTT
Locus tag: ENTCAN_00406
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| ENTCAN_00406 | -229 | 5.7 | AACTAAAACACTGTTTTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgT | ||||
| Ortholog function: 2-keto-3-deoxygluconate permease | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03757 | -231 | 5.7 | AACTAAAACAGTGTTTTATTT |
| Enterobacter sp. 638 | Ent638_0314 | -232 | 5.8 | AACTAAAACATTGTTTTATTT |
|
Position: -34
Score: 6 Sequence: AAATGAAACGCTGTTTTATAT
Locus tag: ENTCAN_00758
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| ENTCAN_00758 | -34 | 6 | AAATGAAACGCTGTTTTATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yjgK | ||||
| Ortholog function: cytoplasmic protein involved in polygalacturonate utilization | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4252 | -35 | 6 | AAATGAAACGTTGTTTTAATT |
| Salmonella typhimurium LT2 | STM4468 | -32 | 5.7 | AAATAAAACGCTGTTTTAACT |
| Citrobacter koseri ATCC BAA-895 | CKO_03553 | -33 | 6.2 | AAATGAAACGTTGTTTTATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04658 | -33 | 5.8 | AAATGAAATGCTGTTTTATAT |
| Enterobacter sp. 638 | Ent638_0453 | -34 | 6 | AAATGAAACATTGTTTTATAT |
| Yersinia pestis KIM | y0739 | -41 | 5.9 | TAATAAAACAGCATTTCATTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0383 | -41 | 5.1 | TTGTAAAACAGGGTTTCATTT |
| Edwardsiella tarda EIB202 | ETAE_3112 | -39 | 5.6 | AAATAAAACGCAGTTTTATAA |
|
Position: -33
Score: 5.5 Sequence: AATTGAAACGCCATTTTATCT
Locus tag: ENTCAN_00832
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| ENTCAN_00832 | -33 | 5.5 | AATTGAAACGCCATTTTATCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgX | ||||
| Ortholog function: predicted 2-keto-3-deoxygluconate permease | ||||
| Salmonella typhimurium LT2 | STM4395 | -34 | 5.8 | AAATAAAACATTATTTTAATT |
| Citrobacter koseri ATCC BAA-895 | CKO_03627 | -31 | 5.2 | AAATAAAACATTATTTCAAAG |
| Enterobacter sp. 638 | Ent638_0375 | -33 | 5.9 | AATTGAAACGTCATTTTATTT |
| Yersinia pestis KIM | y1734 | -22 | 5.8 | TAACGAAACATCATTTCATTT |
|
Position: -43
Score: 5.6 Sequence: AAGTGAAACAATGTTTTAATT
Locus tag: ENTCAN_02822
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| ENTCAN_02822 | -43 | 5.6 | AAGTGAAACAATGTTTTAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tpfX | ||||
| Ortholog function: ThiJ/PfpI-family hypothetical protein | ||||
| Salmonella typhimurium LT2 | STM1931 | -231 | 5.4 | TTATGAAACATTGTTTCAGAT |
| Citrobacter koseri ATCC BAA-895 | CKO_01049 | -199 | 5.4 | TTTTGAAATGATGTTTCATAT |
| Enterobacter sp. 638 | Ent638_2477 | -42 | 5 | GGATGAAACGCTGTTTTAAAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0102 | -85 | 6.1 | TAATAAAACATCGTTTCATTT |
|
Position: -72
Score: 4.9 Sequence: ATTTGAAATGGAGTTTCAACT
Locus tag: ENTCAN_02996
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| ENTCAN_02996 | -72 | 4.9 | ATTTGAAATGGAGTTTCAACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yeeO | ||||
| Ortholog function: predicted multidrug efflux system, MATE family | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1985 | -7 | 4.9 | ATTTGAAATGTGGTTTCACTT |
| Salmonella typhimurium LT2 | STM2013 | -7 | 5 | TATTGAAATGTGGTTTCAACT |
| Citrobacter koseri ATCC BAA-895 | CKO_00837 | -7 | 4.9 | ATTTGAAATGAGGTTTCAACT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02447 | -40 | 5.1 | ATTTGAAATGTTGTTTCAACA |
| Enterobacter sp. 638 | Ent638_2574 | -74 | 5 | ATTTGAAATGTAGTTTCAACT |
| Yersinia pestis KIM | y2593 | -158 | 4.8 | TCATGAAACTATGTTCCATTT |
| Serratia proteamaculans 568 | Spro_3106 | -39 | 5.2 | ATTTGAAATGTTGTTTCACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2762 | -140 | 5.1 | AATAGAAACGTCATTTTAAAA |
|
Position: -108
Score: 5.4 Sequence: AAATGAAATGCTATTTTGATT
Locus tag: ENTCAN_03147
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| ENTCAN_03147 | -108 | 5.4 | AAATGAAATGCTATTTTGATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: setC | ||||
| Ortholog function: lactose/glucose efflux system | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02601 | -102 | 5 | TTTTGAAACGCCTTTTTAATT |
| Enterobacter sp. 638 | Ent638_2764 | -109 | 4.9 | TTTTGAAATGCTATTTTGATT |
|
Position: -2
Score: 5.6 Sequence: AAATGAAACAATGTTTCACAT
Locus tag: ENTCAN_04149
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| ENTCAN_04149 | -2 | 5.6 | AAATGAAACAATGTTTCACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgF | ||||
| Ortholog function: Pectin degradation protein KdgF | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04218 | -38 | 5.6 | AGTTGAAACATTGTTTCAATA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03255 | -39 | 5.8 | AAATGAAACAATGTTTCACTT |
| Enterobacter sp. 638 | Ent638_3287 | -38 | 5.5 | AATTAAAACAATGTTTCACTA |
| Yersinia pestis KIM | y1888 | -155 | 6 | AAATGAAATGATGTTTTATTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2399 | -174 | 6.1 | AAATGAAATAATGTTTTATTT |
|
Position: -302
Score: 5.1 Sequence: TATTGAAACACCGTTTCGACA
Position: -226
Score: 5.4 Sequence: AATTAAAACGACGTTTTAGTA
Locus tag: ENTCAN_04151
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| ENTCAN_04151 | -302 | 5.1 | TATTGAAACACCGTTTCGACA | |
| -226 | 5.4 | AATTAAAACGACGTTTTAGTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: togM | ||||
| Ortholog function: oligogalacturonide ABC transporter, inner membrane permease | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03256 | -288 | 5 | TTTTGAAACATCGTTTCGACT |
| -211 | 5.6 | AATTAAAACGGTGTTTTATAA | ||
| Enterobacter sp. 638 | Ent638_3289 | -226 | 5.1 | AATTAAAACGCCGTTTTACAA |
| Yersinia pestis KIM | y1884 | -152 | 4.5 | AATCAAAACAACGTTCCGACT |
| -76 | 5.2 | GATTGAAACGATGTTTCTATT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2403 | -139 | 4.5 | AATCAAAACAACGTTCCGACT |
| -61 | 5.3 | AATCAAAACAGTGTTTCTATT | ||
|
Position: -71
Score: 5 Sequence: CATTGAAACGATGTTTTGATA
Locus tag: ENTCAN_04160
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| ENTCAN_04160 | -71 | 5 | CATTGAAACGATGTTTTGATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ogl | ||||
| Ortholog function: Oligogalacturonate lyase (EC 4.2.2.6) | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03266 | -299 | 5.8 | ATTTAAAACGATGTTTCATTT |
| -103 | 5.6 | TAATGAAACAATGTTTTGATA | ||
| Enterobacter sp. 638 | Ent638_3297 | -105 | 5 | CATTGAAACGTCGTTTTGATA |
|
Position: -33
Score: 5.6 Sequence: AAAAGAAACGTTATTTTAATT
Locus tag: ENTCAN_04162
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| ENTCAN_04162 | -33 | 5.6 | AAAAGAAACGTTATTTTAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgM | ||||
| Ortholog function: Oligogalacturonate-specific porin protein KdgM | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03267 | -58 | 5.8 | AAATAAAATGATGTTTCATAA |
| -37 | 5.6 | AAACGAAATGTCATTTTATTT | ||
| Enterobacter sp. 638 | Ent638_3298 | -54 | 4.9 | AAATAAAATGCAGTTCCATAA |
| -33 | 5.4 | AAACGAAATGACATTTTAATT | ||