Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fnr regulog to Escherichia albertii TW07627

Reference regulog properties
Source regulog: Fnr - Enterobacteriales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Energy metabolism; Anaerobic metabolism
Effector: Oxygen
Phylum: Gammaproteobacteria
Propagated regulon:
Target genome Escherichia albertii TW07627
Orthologous TF(s) ESCAB7627_2755
Regulated genes 97
Built upon 685 sites [see more]
Predicted regulatory interactions in Escherichia albertii TW07627
Locus tag Position Score Sequence
Position: -42
Score: 4
Sequence: TTGATCCAGGTCAT
Locus tag: ESCAB7627_0513
ESCAB7627_0513 -42 4 TTGATCCAGGTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhcC
Ortholog function: COG1242: Predicted Fe-S oxidoreductase
Enterobacter sp. 638 Ent638_3655 -65 3.7 TTTATTCAAATGAA
-32 4 TTGATCCAGGTCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0313 -70 3.7 TTGATCGCGGTCAT
Escherichia coli str. K-12 substr. MG1655 b3211 -75 4 TTGATCCAGGTCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03623 -75 4 TTGATCCAGGTCAT
Salmonella typhimurium LT2 STM3329 -75 4 TTGATCCAGGTCAT
Serratia proteamaculans 568 Spro_4343 -74 4.2 TTGATCTCTGTCAT
Yersinia pestis KIM y0127 -133 4.2 TTGATCTCTGTCAT
Position: -183
Score: 4.6
Sequence: TTGATAAAAATCAG
Locus tag: ESCAB7627_0604
ESCAB7627_0604 -183 4.6 TTGATAAAAATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: tdcA
Ortholog function: Threonine catabolism transcriptional regulator TdcA, LysR family
Citrobacter koseri ATCC BAA-895 CKO_04518 -183 4.2 TTGACAAAAATCAT
Edwardsiella tarda EIB202 ETAE_0893 -131 3.8 TTGCTCTTTATAAA
Enterobacter sp. 638 Ent638_3565 -184 4.5 TTGATCAATATCAG
Escherichia coli str. K-12 substr. MG1655 b3118 -183 4.2 TTGACAAAAATCAG
Salmonella typhimurium LT2 STM3245 -184 4.7 TTGATTGAAATCAG
Position: -106
Score: 4.2
Sequence: TTGATCTAACTCAC
Locus tag: ESCAB7627_0631
ESCAB7627_0631 -106 4.2 TTGATCTAACTCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxaC
Ortholog function: Uronate isomerase (EC 5.3.1.12)
Citrobacter koseri ATCC BAA-895 CKO_04494 -43 3.8 TTGATCCAACTCAC
Enterobacter sp. 638 Ent638_3546 -105 4.2 TTGATCTAACTCAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0645 -225 3.9 TTGAGTGATATCAC
Escherichia coli str. K-12 substr. MG1655 b3092 -106 4.2 TTGATCTAACTCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03520 -125 4.2 TTGATCTAACTCAC
Position: 0
Score: 3.7
Sequence: ATGCAATACATCAA
Locus tag: ESCAB7627_0632
ESCAB7627_0632 0 3.7 ATGCAATACATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxaA
Ortholog function: Altronate hydrolase (EC 4.2.1.7)
Citrobacter koseri ATCC BAA-895 CKO_04493 -43 3.8 TTGATCCAACTCAC
Enterobacter sp. 638 Ent638_3545 -105 4.2 TTGATCTAACTCAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0647 -225 3.9 TTGAGTGATATCAC
Escherichia coli str. K-12 substr. MG1655 b3091 -106 4.2 TTGATCTAACTCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03519 -125 4.2 TTGATCTAACTCAC
Serratia proteamaculans 568 Spro_4320 -227 3.9 TTGAGTGATATCAC
Yersinia pestis KIM y3598 -225 3.8 TTGAGTGACATCAC
Position: -71
Score: 4.5
Sequence: TTGTTTAACGTCAA
Locus tag: ESCAB7627_0870
ESCAB7627_0870 -71 4.5 TTGTTTAACGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ansB
Ortholog function: L-asparaginase (EC 3.5.1.1)
Edwardsiella tarda EIB202 ETAE_2179 0 3.7 ATGAAGTTAGTCAA
Escherichia coli str. K-12 substr. MG1655 b2957 -71 4.5 TTGTTTAACGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1616 -55 3.7 TTTATTGTTATCAT
Proteus mirabilis HI4320 PMI0708 -139 4.2 TTGATTTTAAATAA
Yersinia pestis KIM y2787 0 3.6 ATGAAATATATAAA
Position: 3
Score: 4
Sequence: TTTACCTTTATCAA
Locus tag: ESCAB7627_1108
ESCAB7627_1108 3 4 TTTACCTTTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hyfH
Ortholog function: Hydrogenase-4 component H (EC 1.-.-.-)
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1240 -91 3.5 TTGAATTAAAGAAA
Escherichia coli str. K-12 substr. MG1655 b2488 -29 3.8 ATGTTTCATATCAT
Proteus mirabilis HI4320 PMI2521 -114 4.9 TTGATTTTTAACAA
Position: -90
Score: 3.9
Sequence: TTATTTAAAAACAA
Locus tag: ESCAB7627_1117
ESCAB7627_1117 -90 3.9 TTATTTAAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: norV
Ortholog function: Anaerobic nitric oxide reductase flavorubredoxin
Citrobacter koseri ATCC BAA-895 CKO_04064 -90 4.2 TTATTTAAAATCAA
Enterobacter sp. 638 Ent638_3182 -147 4.1 TTGACAGTAAACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03045 -53 3.7 TTGATATAAGCCAG
Salmonella typhimurium LT2 STM2840 -89 3.7 TCAATACAAATCAA
Position: -165
Score: 3.3
Sequence: TGAATACATATCAA
Locus tag: ESCAB7627_1122
ESCAB7627_1122 -165 3.3 TGAATACATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydeJ
Ortholog function: Competence/damage-inducible protein CinA
Edwardsiella tarda EIB202 ETAE_2862 -5 3.4 TCGCTATGGAACAA
Enterobacter sp. 638 Ent638_3132 -81 4.1 TTCAGTAAAATCAA
Escherichia coli str. K-12 substr. MG1655 b1537 -195 3.5 TTGTTATAAGGCAT
7 3.5 TTAATAGAGATAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03032 -26 3.5 TTTATCCAGAGCAA
Proteus mirabilis HI4320 PMI0374 -19 3.5 TCGAGGTGAAACAA
Salmonella typhimurium LT2 STM2830 -347 3.3 TTGACCGCCGTCAT
Salmonella typhimurium LT2 STM1514 -238 3.6 GTCATATGCATCAA
Yersinia pestis KIM y0880 -297 3.7 TTGATCGCAGTTAA
Position: -249
Score: 4.8
Sequence: TTGAGCTACATCAA
Locus tag: ESCAB7627_4194
ESCAB7627_4194 -249 4.8 TTGAGCTACATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdD
Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Citrobacter koseri ATCC BAA-895 CKO_03580 -235 4.2 TTGATGCAAATCAC
Edwardsiella tarda EIB202 ETAE_0423 -196 4.7 TTGATTCAGGTCAA
Enterobacter sp. 638 Ent638_0437 -244 4.7 TTGTTCTGAATCAA
-213 4.2 TTGATGCAAATCAC
Erwinia amylovora ATCC 49946 EAM_3059 -106 4.2 TTGCTTCAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0375 -182 4.8 TTGCTCTACATCAA
Escherichia coli str. K-12 substr. MG1655 b4238 -249 4.8 TTGAGCTACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04646 -248 4.2 TTGTTCTGGGTCAA
-217 4.2 TTGATGCAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu4499 -160 4.7 TTGTTTCAGATCAA
Proteus mirabilis HI4320 PMI3451 -184 4.9 TTGATTTAGATCAG
Salmonella typhimurium LT2 STM4452 -249 5 TTGTTCTACATCAA
-218 4.2 TTGATGCAAATCAC
Serratia proteamaculans 568 Spro_0525 -217 4.7 TTGTTCTACGTCAA
Yersinia pestis KIM y0733 -192 4.6 TTGTTCTAGGTCAA
Position: -25
Score: 4.5
Sequence: TTGTTAAAAAACAA
Locus tag: ESCAB7627_4294
ESCAB7627_4294 -25 4.5 TTGTTAAAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuA
Ortholog function: C4-dicarboxylate transporter DcuA
Escherichia coli str. K-12 substr. MG1655 b4138 -25 4.5 TTGTTAAAAAACAA
Escherichia coli str. K-12 substr. MG1655 b4138 -25 4.5 TTGTTAAAAAACAA
Position: -205
Score: 4.4
Sequence: TTGAGCCACATCAA
Position: -177
Score: 3.5
Sequence: ATTATCTAAACCAA
Position: -24
Score: 3.6
Sequence: TTAATGAGAAACAA
Locus tag: ESCAB7627_4388
ESCAB7627_4388 -205 4.4 TTGAGCCACATCAA
-177 3.5 ATTATCTAAACCAA
-24 3.6 TTAATGAGAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Citrobacter koseri ATCC BAA-895 CKO_04830 -204 4.1 TTGAGCCATGTCAA
Enterobacter sp. 638 Ent638_3821 -133 4.2 TTGAGCAAGGTCAA
Escherichia coli str. K-12 substr. MG1655 b3408 -203 4.4 TTGAGCCACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03778 -198 3.8 TTGCGGCATATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0209 -206 3.5 TGGATGCAAATCAT
Proteus mirabilis HI4320 PMI2920 -190 5.2 TTGATGTACATCAA
Salmonella typhimurium LT2 STM3505 -204 4.4 TTGAGCCATATCAA
Serratia proteamaculans 568 Spro_4628 -284 3.8 CTGATTTAACTCAC
Yersinia pestis KIM y3912 -93 4 ATTATTTAAATCAT
Position: -3
Score: 3.6
Sequence: TCGATGGAAAGCAA
Locus tag: ESCAB7627_4396
ESCAB7627_4396 -3 3.6 TCGATGGAAAGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: malQ
Ortholog function: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)
Citrobacter koseri ATCC BAA-895 CKO_04837 -73 3.7 ATGAGGAAGGTCAA
Enterobacter sp. 638 Ent638_3829 -340 3.7 CTGATACGCGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4135 -251 4 TTGATTACCATGAA
Escherichia coli str. K-12 substr. MG1655 b3416 -340 4 ATGATCTTAATAAA
-75 3.7 ATGAGGAAGGTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03786 -370 3.6 TTGTTTTTATTAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0469 -359 3.8 ATGATTTATTTCAT
Salmonella typhimurium LT2 STM3513 16 3.7 TCAATAAAGATCAA
Serratia proteamaculans 568 Spro_4635 -359 3.8 TTGCTATTGATCAC
Position: -340
Score: 4.1
Sequence: ATGATATTAATAAA
Position: -236
Score: 3.6
Sequence: TTGATAATACGCAA
Position: -75
Score: 3.7
Sequence: ATGAGGAAGGTCAA
Locus tag: ESCAB7627_4397
ESCAB7627_4397 -340 4.1 ATGATATTAATAAA
-236 3.6 TTGATAATACGCAA
-75 3.7 ATGAGGAAGGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: malP
Ortholog function: Maltodextrin phosphorylase (EC 2.4.1.1)
Citrobacter koseri ATCC BAA-895 CKO_04838 -73 3.7 ATGAGGAAGGTCAA
Escherichia coli str. K-12 substr. MG1655 b3417 -340 4 ATGATCTTAATAAA
-75 3.7 ATGAGGAAGGTCAA
Salmonella typhimurium LT2 STM3514 16 3.7 TCAATAAAGATCAA
Serratia proteamaculans 568 Spro_4636 -359 3.8 TTGCTATTGATCAC
Position: -116
Score: 3.7
Sequence: TTGAGTGAAATCCA
Locus tag: ESCAB7627_4478
ESCAB7627_4478 -116 3.7 TTGAGTGAAATCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pitA
Ortholog function: Phosphate transporter, low-affinity
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0048 -140 4 TTGATTTATATTGA
Escherichia coli str. K-12 substr. MG1655 b3493 -116 3.8 TTGAGTGAAATCCA
Salmonella typhimurium LT2 STM3589 -116 4.2 GTGATATCAAACAA
Yersinia pestis KIM y3862 -201 4.1 TTGAATAAAATCAT
Position: -123
Score: 4.4
Sequence: TTGATTCCTGTCAA
Locus tag: ESCAB7627_4516
ESCAB7627_4516 -123 4.4 TTGATTCCTGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhjA
Ortholog function: Cytochrome c551 peroxidase (EC 1.11.1.5)
Citrobacter koseri ATCC BAA-895 CKO_04957 -73 4.7 TTGATACTTATCAA
Edwardsiella tarda EIB202 ETAE_1715 -117 4.3 TTGACACTTATCAA
Escherichia coli str. K-12 substr. MG1655 b3518 -121 4.7 TTGATTCCTATCAA
Salmonella typhimurium LT2 STM3820 -110 4.7 TTGATACCAATCAA
Salmonella typhimurium LT2 STM3820 -110 4.7 TTGATACCAATCAA
Serratia proteamaculans 568 Spro_1968 -89 4.6 TTGATTATCGTCAA
Yersinia pestis KIM y0848 -152 4.7 TTGATAAAGGTCAA
Position: -86
Score: 4
Sequence: TTGATCCAGAACAG
Locus tag: ESCAB7627_4594
ESCAB7627_4594 -86 4 TTGATCCAGAACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nikA
Ortholog function: Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3)
Citrobacter koseri ATCC BAA-895 CKO_04926 -228 3.8 TTGATCCAGAACAC
Edwardsiella tarda EIB202 ETAE_1379 -80 3.4 TTGATCCATCACAC
Enterobacter sp. 638 Ent638_1834 -85 3.5 TTGATCCAGCACAG
Escherichia coli str. K-12 substr. MG1655 b3476 -86 4 TTGATCCAGAACAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03850 -6 4 TTGATTATGCACAA
Position: -197
Score: 5.5
Sequence: TTGATTTAAATCAA
Position: -144
Score: 5.1
Sequence: TTGTTTTACATCAA
Locus tag: ESCAB7627_1298
ESCAB7627_1298 -197 5.5 TTGATTTAAATCAA
-144 5.1 TTGTTTTACATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ung
Ortholog function: Uracil-DNA glycosylase (EC 3.2.2.27)
Citrobacter koseri ATCC BAA-895 CKO_00204 -209 5.6 TTGATTTAAATCAA
-156 5.1 TTGTTTTACATCAA
Edwardsiella tarda EIB202 ETAE_2734 -396 4.1 TTGAGATAGAGCAA
-280 5.4 TTGATCTAAATCAA
-227 4.7 ATGTTTTACATCAA
Enterobacter sp. 638 Ent638_3065 -194 5 TTGACCTAAATCAA
-142 5.1 TTGTTTTATATCAA
34 4.2 CTGATGAAAAACAA
Erwinia amylovora ATCC 49946 EAM_2526 -177 4.9 TTGATGCAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3289 -228 5.1 TTGACTTAAATCAA
-175 5.1 TTGTTTTATATCAA
Escherichia coli str. K-12 substr. MG1655 b2580 -197 5.6 TTGATTTAAATCAA
-144 5.1 TTGTTTTACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02903 -206 5.5 TTGATATAAATCAA
-153 5.1 TTGTTTTACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3371 -233 4.1 TTGATTCAGAACAG
Proteus mirabilis HI4320 PMI1899 -221 5.1 TTGATAAATATCAA
-168 5.2 TTGTTTTAAATCAA
Salmonella typhimurium LT2 STM2647 -208 5.6 TTGATTTAAATCAA
-155 5.1 TTGTTTTACATCAA
Serratia proteamaculans 568 Spro_3683 -222 5 TTGATTAAAGTCAA
-169 4.4 ATGTTTTATGTCAA
Yersinia pestis KIM y1281 -213 5.2 TTGATTCAAATCAA
-160 4.7 ATGTTTTATATCAA
Position: -121
Score: 5.5
Sequence: TTGATTTAAATCAA
Locus tag: ESCAB7627_1299
ESCAB7627_1299 -121 5.5 TTGATTTAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfiD
Ortholog function: Stress-induced alternate pyruvate formate-lyase subunit
Escherichia coli str. K-12 substr. MG1655 b2579 -174 5.1 TTGATGTAAAACAA
-121 5.6 TTGATTTAAATCAA
Position: -40
Score: 4.8
Sequence: TTGAGATACATCAA
Locus tag: ESCAB7627_1332
ESCAB7627_1332 -40 4.8 TTGAGATACATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmp
Ortholog function: Nitric oxide dioxygenase (EC 1.14.12.17)
Citrobacter koseri ATCC BAA-895 CKO_00235 -40 4.4 TTGACATACATCAT
Escherichia coli str. K-12 substr. MG1655 b2552 -40 4.8 TTGAGATACATCAA
Salmonella typhimurium LT2 STM2556 -40 4.8 TTGATATACATCAT
Position: -243
Score: 4.5
Sequence: TTGACTTTAGTCAA
Locus tag: ESCAB7627_1398
ESCAB7627_1398 -243 4.5 TTGACTTTAGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: purM
Ortholog function: Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)
Edwardsiella tarda EIB202 ETAE_1086 -186 4.7 ATGATCTCAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1254 -198 4.3 CTGATCCAGATCAA
Escherichia coli str. K-12 substr. MG1655 b2499 -243 4.6 TTGACTTTAGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2760 -137 5.2 TTGATTTTCATCAA
Proteus mirabilis HI4320 PMI1575 -148 5 TTGATATTGATCAA
Salmonella typhimurium LT2 STM2499.S -309 4.4 TTGACCTGGATCAA
Yersinia pestis KIM y1407 -312 4.5 CTGATTCAGATCAA
-274 3.7 ATGCTAAAAATCAG
Position: -95
Score: 4.5
Sequence: TTGACTAAAGTCAA
Locus tag: ESCAB7627_1400
ESCAB7627_1400 -95 4.5 TTGACTAAAGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: upp
Ortholog function: Uracil phosphoribosyltransferase (EC 2.4.2.9)
Citrobacter koseri ATCC BAA-895 CKO_00293 -103 4.6 TTGATCCATGTCAA
Edwardsiella tarda EIB202 ETAE_1087 -97 4.5 TTGATTGAGATCAT
Enterobacter sp. 638 Ent638_2986 -97 4.4 TTGATCACCGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1255 -169 4.3 TTGATCTGGATCAG
Escherichia coli str. K-12 substr. MG1655 b2498 -95 4.6 TTGACTAAAGTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02821 -96 5 TTGATATACGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2759 -103 5.1 TTGATGAAAATCAA
Proteus mirabilis HI4320 PMI1574 -97 5.1 TTGATCAATATCAA
Salmonella typhimurium LT2 STM2498 -103 4.6 TTGATCCAGGTCAA
Yersinia pestis KIM y1408 -98 4.4 TTGATCTGAATCAG
Position: -92
Score: 4.1
Sequence: ATGATGTTAATCAT
Locus tag: ESCAB7627_1577
ESCAB7627_1577 -92 4.1 ATGATGTTAATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: Acetate kinase (EC 2.7.2.1)
Citrobacter koseri ATCC BAA-895 CKO_00498 -92 4.1 ATGATGTTAATCAT
Edwardsiella tarda EIB202 ETAE_2397 -93 4.1 ATGATGTTAATCAT
Enterobacter sp. 638 Ent638_2840 -92 4.1 ATGATGTTAATCAT
Erwinia amylovora ATCC 49946 EAM_2301 -119 3.9 TTGCTTTCGGACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3039 -91 4.1 ATGATGTTAATCAT
Escherichia coli str. K-12 substr. MG1655 b2296 -92 4.1 ATGATGTTAATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02687 -91 4.1 ATGATGTTAATCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu3095 -117 4.1 ATGATGTTAATCAT
Proteus mirabilis HI4320 PMI1771 -165 3.7 TTGATGATTGGCAA
Salmonella typhimurium LT2 STM2337 -92 4.1 ATGATGTTAATCAT
Serratia proteamaculans 568 Spro_3316 -121 4.1 ATGATGTTAATCAT
Yersinia pestis KIM y1622 -163 4.1 ATGATGTTAATCAT
Position: -13
Score: 4
Sequence: TTGAGGGATAACAA
Locus tag: ESCAB7627_1636
ESCAB7627_1636 -13 4 TTGAGGGATAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpA
Ortholog function: Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00536 -30 3.8 ATGATAAAAAACGA
Edwardsiella tarda EIB202 ETAE_3115 -78 4.1 TTGCTCCTTATCAA
Enterobacter sp. 638 Ent638_2805 -69 4.3 ATGTTCGAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4165 -84 4.5 TTGCTCTTTATCAA
Escherichia coli str. K-12 substr. MG1655 b2241 -71 3.6 ATGCGCGAAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02647 -71 4.1 ATGCTCGAAATCAA
Proteus mirabilis HI4320 PMI3592 -107 4.2 TTGCTCATTATCAA
Salmonella typhimurium LT2 STM2284 -30 3.8 ATGATAAAAAACGA
Serratia proteamaculans 568 Spro_0200 -74 4.3 TTGTTCCTTATCAA
Yersinia pestis KIM y0404 -145 4.3 TTGATCACAATCAT
-91 4.4 TTGTTTCTTATCAA
Position: -210
Score: 3.2
Sequence: TTGTTTATAACCAT
Locus tag: ESCAB7627_1674
ESCAB7627_1674 -210 3.2 TTGTTTATAACCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: napF
Ortholog function: Ferredoxin-type protein NapF (periplasmic nitrate reductase)
Escherichia coli str. K-12 substr. MG1655 b2208 -46 3.2 TTGGTCGCTCTCAA
Salmonella typhimurium LT2 STM2261 -90 3.3 CTTATTTACAAAAA
Position: -30
Score: 3.4
Sequence: TTATTTTTGTTCAA
Locus tag: ESCAB7627_1683
ESCAB7627_1683 -30 3.4 TTATTTTTGTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmC
Ortholog function: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Citrobacter koseri ATCC BAA-895 CKO_00577 -136 3.6 TTGACTGGCGACAA
Edwardsiella tarda EIB202 ETAE_2459 -114 3.5 TTATTGTATATAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1884 -106 4.4 TTGATCTCAATAAA
Escherichia coli str. K-12 substr. MG1655 b2199 -46 3.2 TTGGTCGCTCTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02079 -326 3.4 GTGATACAAGTCAC
Salmonella typhimurium LT2 STM2252 -90 3.3 CTTATTTACAAAAA
Salmonella typhimurium LT2 STM3817 -110 4.7 TTGATACCAATCAA
Yersinia pestis KIM y1569 -302 4 TGGATTTTTAACAA
Position: -103
Score: 4.7
Sequence: TTGATTTCAATCAG
Locus tag: ESCAB7627_0080
ESCAB7627_0080 -103 4.7 TTGATTTCAATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuC
Ortholog function: C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1)
Citrobacter koseri ATCC BAA-895 CKO_02537 -106 4.7 TTGATTTTAATCAG
Edwardsiella tarda EIB202 ETAE_1192 -147 4.1 TTGACCAATATCAG
Enterobacter sp. 638 Ent638_1152 -102 4.4 TTGATTTTAGTCAT
Escherichia coli str. K-12 substr. MG1655 b0621 -103 4.7 TTGATTTTAATCAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00654 -104 4.5 TTGATTTGCATCAG
Proteus mirabilis HI4320 PMI0652 -127 4.5 TTGATATATGTCAT
Salmonella typhimurium LT2 STM0627 -138 3.6 TTCATCTTTAGCAA
-101 4.1 GTGATTTTAATCAG
Serratia proteamaculans 568 Spro_1579 -107 4 TTGACGGATATCAT
Position: -213
Score: 4.1
Sequence: TTGATTTATTTCAC
Locus tag: ESCAB7627_0082
ESCAB7627_0082 -213 4.1 TTGATTTATTTCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: citA
Ortholog function: Anaerobic citrate fermentation two-component regulatory system sensor kinase CitA (EC 2.7.3.-)
Citrobacter koseri ATCC BAA-895 CKO_02540 -216 4.1 TTGATTTATTTCAC
Escherichia coli str. K-12 substr. MG1655 b0619 -213 4.1 TTGATTTATTTCAC
Position: -274
Score: 3.8
Sequence: ATCAATTAAATCAA
Position: -180
Score: 4.1
Sequence: GTGAAATAAATCAA
Locus tag: ESCAB7627_0083
ESCAB7627_0083 -274 3.8 ATCAATTAAATCAA
-180 4.1 GTGAAATAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: citC
Ortholog function: [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22)
Citrobacter koseri ATCC BAA-895 CKO_02541 -184 4.1 GTGAAATAAATCAA
Enterobacter sp. 638 Ent638_3375 19 4.1 TTTATAAAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2574 -93 3.8 TTGAGCCAAATAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00034 -125 3.6 TTAATTAACAACAT
Salmonella typhimurium LT2 STM0058 -227 4.2 TTGATGGGTAACAA
Position: 13
Score: 3.9
Sequence: TTGAACAATCTCAA
Locus tag: ESCAB7627_0086
ESCAB7627_0086 13 3.9 TTGAACAATCTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: citF
Ortholog function: Citrate lyase alpha chain (EC 4.1.3.6)
Citrobacter koseri ATCC BAA-895 CKO_02544 -184 4.1 GTGAAATAAATCAA
Enterobacter sp. 638 Ent638_3372 19 4.1 TTTATAAAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2571 -93 3.8 TTGAGCCAAATAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00037 -125 3.6 TTAATTAACAACAT
Salmonella typhimurium LT2 STM0061 -227 4.2 TTGATGGGTAACAA
Salmonella typhimurium LT2 STM0621 -182 4.1 GTGAAATAAATCAA
Position: -16
Score: 3.3
Sequence: TTGAGGAAGAATAA
Locus tag: ESCAB7627_0233
ESCAB7627_0233 -16 3.3 TTGAGGAAGAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoB
Ortholog function: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)
Citrobacter koseri ATCC BAA-895 CKO_02730 -267 3.7 TTGTTGATAATTAA
Erwinia amylovora ATCC 49946 EAM_0984 -207 3.7 GTTATTTAAATCAG
Escherichia coli str. K-12 substr. MG1655 b0431 -241 3.7 TTGTTTTATTTCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00393 -49 3.7 TTGAGGTCGTTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3876 -336 3.8 TTGTGAGCTATCAA
Proteus mirabilis HI4320 PMI0107 9 3.6 ATGAAATACATAAA
Salmonella typhimurium LT2 STM0442 -268 3.4 TTTATTGATAATAA
Serratia proteamaculans 568 Spro_1089 -293 3.6 TTCTTTTACATTAA
Yersinia pestis KIM y1020 -223 3.5 TTGTTTTTCCTTAA
Position: -150
Score: 5
Sequence: TTGATTCACATCAA
Locus tag: ESCAB7627_2413
ESCAB7627_2413 -150 5 TTGATTCACATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase (EC 1.6.99.3)
Citrobacter koseri ATCC BAA-895 CKO_01946 -163 5.2 TTGATGTACATCAA
Edwardsiella tarda EIB202 ETAE_2070 -162 5.1 TTGATTTGAATCAA
Enterobacter sp. 638 Ent638_1624 -149 5.1 TTGATTCATATCAA
Erwinia amylovora ATCC 49946 EAM_1473 -146 4.2 TTGACCAGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1815 -149 5.4 TTGATATATATCAA
Escherichia coli str. K-12 substr. MG1655 b1109 -150 5.2 TTGATTAACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01106 -148 4.8 TTGATGCACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2821 -150 4.2 TTGATGTTGTTCAA
Proteus mirabilis HI4320 PMI0875 -153 5.5 TTGATATAAATCAA
Salmonella typhimurium LT2 STM1211 -150 4.8 TTGATGCACATCAA
Serratia proteamaculans 568 Spro_1926 -149 5.2 TTGATGTACATCAA
Yersinia pestis KIM y1777 -148 5.4 TTGATATATATCAA
Position: -121
Score: 3.7
Sequence: TTTATATTCATTAA
Locus tag: ESCAB7627_2432
ESCAB7627_2432 -121 3.7 TTTATATTCATTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepT
Ortholog function: Tripeptide aminopeptidase (EC 3.4.11.4)
Citrobacter koseri ATCC BAA-895 CKO_01926 -42 3.3 TTGCTTATTAATAA
Escherichia coli str. K-12 substr. MG1655 b1127 -121 3.7 TTTATATTCATTAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01133 -347 3.5 TTGTTGATGGTCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu2810 -156 3.8 TTGATGAAAAGCAT
Proteus mirabilis HI4320 PMI0882 -92 3.7 TTGATTTAATTAAT
Salmonella typhimurium LT2 STM1227 -375 4.1 TTGTTAATGGTCAA
Serratia proteamaculans 568 Spro_2009 -96 3.6 ATGATTTCCGTTAA
Yersinia pestis KIM y1791 -23 4 TTGATCATGATCAC
Position: -279
Score: 5.4
Sequence: TTGATATAAATCAA
Position: -241
Score: 4.5
Sequence: TTGATATTTATCAT
Locus tag: ESCAB7627_2518
ESCAB7627_2518 -279 5.4 TTGATATAAATCAA
-241 4.5 TTGATATTTATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: narX
Ortholog function: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
Enterobacter sp. 638 Ent638_2317 -251 5.5 TTGATATAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2029 -268 4.9 TTGATGCAAATCAA
Escherichia coli str. K-12 substr. MG1655 b1222 -279 5.4 TTGATGTAAATCAA
-241 4.6 TTGATATTTATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02216 -251 5.5 TTGATATAAATCAA
Proteus mirabilis HI4320 PMI3569 -235 4.5 ATGATCTGCATCAA
Salmonella typhimurium LT2 STM1766 -281 5.5 TTGATATAAATCAA
Serratia proteamaculans 568 Spro_2899 -301 5.4 TTGATGTAAATCAA
Position: -73
Score: 5.5
Sequence: TTGATTTATATCAA
Locus tag: ESCAB7627_2519
ESCAB7627_2519 -73 5.5 TTGATTTATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narK
Ortholog function: Nitrate/nitrite antiporter
Citrobacter koseri ATCC BAA-895 CKO_01299 -229 5.5 TTGATTTATATCAA
Escherichia coli str. K-12 substr. MG1655 b1223 -111 4.7 ATGATAAATATCAA
-73 5.4 TTGATTTACATCAA
Salmonella typhimurium LT2 STM1765 -73 5.5 TTGATTTATATCAA
Position: -105
Score: 4.7
Sequence: TTGATCGTTATCAA
Locus tag: ESCAB7627_2520
ESCAB7627_2520 -105 4.7 TTGATCGTTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narG
Ortholog function: Respiratory nitrate reductase alpha chain (EC 1.7.99.4)
Citrobacter koseri ATCC BAA-895 CKO_01301 -105 4.7 TTGATCGTTATCAA
Enterobacter sp. 638 Ent638_2315 -100 4.7 TTGATCGTTATCAA
Escherichia coli str. K-12 substr. MG1655 b1224 -105 4.7 TTGATCGTTATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02214 -106 4.6 TTGATCGCTATCAA
Salmonella typhimurium LT2 STM1764 -105 4.7 TTGATCGTTATCAA
Position: -238
Score: 4.7
Sequence: TTGATTTAGATCAC
Position: -100
Score: 4.6
Sequence: TTGATTTTCATCAG
Locus tag: ESCAB7627_2545
ESCAB7627_2545 -238 4.7 TTGATTTAGATCAC
-100 4.6 TTGATTTTCATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Citrobacter koseri ATCC BAA-895 CKO_01318 -238 4.1 TTGATCTGGATCAC
Enterobacter sp. 638 Ent638_2304 -249 4.5 TTGATTCAGATCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2326 -311 3.6 TCGATGTTGATCAC
-305 3.8 TTGATCACAAAAAA
Escherichia coli str. K-12 substr. MG1655 b1241 -237 4.3 TTGATTTGGATCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02199 -233 4.7 TTGATCTAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu2496 -134 4.5 GTGATTAAGATCAA
Proteus mirabilis HI4320 PMI1486 -242 3.8 GTGATGTAGATCAC
Salmonella typhimurium LT2 STM1749 -238 4.7 TTGATTTAGATCAC
Serratia proteamaculans 568 Spro_2704 -274 4.4 ATGATTTAAATCAC
Position: -117
Score: 4.1
Sequence: TTAATCCAGATCAA
Locus tag: ESCAB7627_2564
ESCAB7627_2564 -117 4.1 TTAATCCAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W; colicin S4 receptor; putative transporter
Citrobacter koseri ATCC BAA-895 CKO_01333 -117 4.1 TTAATCTGGATCAA
Edwardsiella tarda EIB202 ETAE_1528 -157 4.9 TTGATGTCTATCAA
Enterobacter sp. 638 Ent638_2283 -117 4.1 TTAATCTGGATCAA
Erwinia amylovora ATCC 49946 EAM_1884 -160 5.4 TTGATCTAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2303 -160 4.8 TTGATCTGGATCAA
Escherichia coli str. K-12 substr. MG1655 b1256 -162 4.8 TTGATTTAAATCAC
-117 4.1 TTAATCCAGATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01248 -247 4.2 TTGATTTCACTCAT
-80 4.1 TTAATCTGGATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2478 -160 5 TTGATTTGGATCAA
Proteus mirabilis HI4320 PMI1350 -164 4.8 TTGATGTGGATCAA
Salmonella typhimurium LT2 STM1732 -117 4.1 TTAATCTGGATCAA
Serratia proteamaculans 568 Spro_2674 -131 5 TTGATTCAGATCAA
Yersinia pestis KIM y2044 -171 3.6 ATGATAAATGGCAA
-147 4.4 ATGATCCAGATCAA
Position: -204
Score: 3.6
Sequence: TTTTTATCAATCAT
Position: -114
Score: 3.7
Sequence: TTCTCTTTTATCAA
Locus tag: ESCAB7627_2584
ESCAB7627_2584 -204 3.6 TTTTTATCAATCAT
-114 3.7 TTCTCTTTTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: acnA
Ortholog function: Aconitate hydratase (EC 4.2.1.3); 2-methylisocitrate dehydratase (EC 4.2.1.99)
Enterobacter sp. 638 Ent638_2192 -135 4.6 TTGTTTTATCTCAA
Erwinia amylovora ATCC 49946 EAM_1866 37 4.4 TGGATGTAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1941 -98 3.7 ATGAGCTTACTCAA
Escherichia coli str. K-12 substr. MG1655 b1276 -133 3.7 TTGCTTTGCCACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2432 7 4.6 TTGATTTAAAAAAA
Salmonella typhimurium LT2 STM1712 -301 3.9 TTGATTAAACACAG
Yersinia pestis KIM y2063 -37 3.9 TTGAATTAAAACAC
Position: -113
Score: 4.1
Sequence: TTGATATGGATTAA
Locus tag: ESCAB7627_2597
ESCAB7627_2597 -113 4.1 TTGATATGGATTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ynfE
Ortholog function: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
Citrobacter koseri ATCC BAA-895 CKO_01581 -114 3.7 TTGACATGGATTAA
Escherichia coli str. K-12 substr. MG1655 b1587 -113 4.1 TTGATATGGATTAA
Salmonella typhimurium LT2 STM1499 -116 3.7 TTGACATGGATTAA
Serratia proteamaculans 568 Spro_1687 -164 4.2 TTGATAGCAGACAA
-40 4.2 ATGACGTTTATCAA
Position: -131
Score: 4.6
Sequence: ATGTTGTAAATCAA
Locus tag: ESCAB7627_3148
ESCAB7627_3148 -131 4.6 ATGTTGTAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceE
Ortholog function: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Citrobacter koseri ATCC BAA-895 CKO_03259 -133 4.6 ATGTTGTAAATCAA
Edwardsiella tarda EIB202 ETAE_0659 -165 4.5 TTGATTGTTAACAA
-139 5 ATGATTTACATCAA
Enterobacter sp. 638 Ent638_0660 -116 4.7 CTGATTTCAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3789 -116 4.2 GTGATTTAGCTCAA
Escherichia coli str. K-12 substr. MG1655 b0114 -131 4.6 ATGTTGTAAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00118 -114 4.7 CTGATTTCAATCAA
Proteus mirabilis HI4320 PMI2046 -245 4 ATGTGTTTAATCAA
-134 4.2 ATGATTTCGCTCAA
Salmonella typhimurium LT2 STM0152 -116 4.7 CTGATTTCAATCAA
Serratia proteamaculans 568 Spro_4011 -117 4.6 CTGATTTCGATCAA
Yersinia pestis KIM y0767 -135 4.4 ATGATTTCGGTCAA
Position: -115
Score: 4.8
Sequence: ATGATTTCAATCAA
Locus tag: ESCAB7627_3149
ESCAB7627_3149 -115 4.8 ATGATTTCAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhR
Ortholog function: Pyruvate dehydrogenase complex transcriptional regulator PdhR, GntR family
Citrobacter koseri ATCC BAA-895 CKO_03260 -116 4.7 CTGATTTCAATCAA
Edwardsiella tarda EIB202 ETAE_0658 -165 4.5 TTGATTGTTAACAA
-139 5 ATGATTTACATCAA
Enterobacter sp. 638 Ent638_0659 -116 4.7 CTGATTTCAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3790 -116 4.2 GTGATTTAGCTCAA
Escherichia coli str. K-12 substr. MG1655 b0113 -115 4.8 ATGATTTCAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00117 -114 4.7 CTGATTTCAATCAA
Proteus mirabilis HI4320 PMI2047 -245 4 ATGTGTTTAATCAA
-134 4.2 ATGATTTCGCTCAA
Salmonella typhimurium LT2 STM0151 -116 4.7 CTGATTTCAATCAA
Serratia proteamaculans 568 Spro_4012 -117 4.6 CTGATTTCGATCAA
Yersinia pestis KIM y0766 -135 4.4 ATGATTTCGGTCAA
Position: -53
Score: 3.7
Sequence: TTCATTCCGAACAA
Locus tag: ESCAB7627_3229
ESCAB7627_3229 -53 3.7 TTCATTCCGAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: caiF
Ortholog function: Transcriptional activatory protein CaiF
Edwardsiella tarda EIB202 ETAE_2672 -358 3.6 ATGATCACCATCAC
Escherichia coli str. K-12 substr. MG1655 b0034 -53 3.7 TTGCTTCAAAACGA
Proteus mirabilis HI4320 PMI2660 -313 4 TTGTTGTTTATAAA
Position: -291
Score: 5
Sequence: TTGATATATGTCAA
Locus tag: ESCAB7627_3268
ESCAB7627_3268 -291 5 TTGATATATGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcA
Ortholog function: Aerobic respiration control protein arcA
Citrobacter koseri ATCC BAA-895 CKO_03387 -291 5.1 TTGATATATGTCAA
Edwardsiella tarda EIB202 ETAE_0561 -300 5.1 TTGATATATGTCAA
Enterobacter sp. 638 Ent638_0562 -291 5.1 TTGATATATGTCAA
Erwinia amylovora ATCC 49946 EAM_0640 -399 4.5 TTGATGCAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3893 -339 5.1 TTGATATATGTCAA
Escherichia coli str. K-12 substr. MG1655 b4401 -291 5.1 TTGATATATGTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04856 -291 5.1 TTGATATATGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0562 -282 4.9 TTGATGTACGTCAA
Proteus mirabilis HI4320 PMI3719 -343 4 ATTACATAAATCAA
-282 4.6 TTGATATGTGTCAA
Salmonella typhimurium LT2 STM4598 -291 5.1 TTGATATATGTCAA
Serratia proteamaculans 568 Spro_0681 -299 5.1 TTGATATATGTCAA
Yersinia pestis KIM y3721 -298 5.1 TTGATATATGTCAA
Position: -5
Score: 3.8
Sequence: TTGTTATGACACAA
Locus tag: ESCAB7627_3340
ESCAB7627_3340 -5 3.8 TTGTTATGACACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjiH
Ortholog function: putative inner membrane protein
Escherichia coli str. K-12 substr. MG1655 b4330 -5 3.9 TTGTTATGACACAA
Salmonella typhimurium LT2 STM4514.S -283 4.4 TTGACTAACGTCAA
Position: -136
Score: 3.7
Sequence: TTAATATTTTTCAA
Position: -33
Score: 4.7
Sequence: TTGACAAATATCAA
Locus tag: ESCAB7627_2755
ESCAB7627_2755 -136 3.7 TTAATATTTTTCAA
-33 4.7 TTGACAAATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fnr
Ortholog function: Fumarate and nitrate reduction regulatory protein
Citrobacter koseri ATCC BAA-895 CKO_01409 -83 3.8 TTGATGTAAAGTAA
Edwardsiella tarda EIB202 ETAE_1744 -133 3.4 GTGCTATACATCAC
-33 4.6 TTGACCGATATCAA
Enterobacter sp. 638 Ent638_1853 -33 4.6 TTGACCAATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2207 -34 4.6 TTGACCAATATCAA
Escherichia coli str. K-12 substr. MG1655 b1334 -33 4.7 TTGACAAATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01530 -327 4.6 TTGACCAATATCAA
-185 3.5 ATGAGCTTGATCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu2179 -35 3.4 TTGAAGGATATGAA
Proteus mirabilis HI4320 PMI1203 -40 4.5 TTGACACATATCAA
Salmonella typhimurium LT2 STM1660.S -33 4.7 TTGACAAATATCAA
Serratia proteamaculans 568 Spro_2582 -34 4.4 TTGACGCATATCAA
Yersinia pestis KIM y2132 -32 4.4 TTGACGCATATCAA
Position: -324
Score: 3.9
Sequence: TTGATGTCTTACAA
Position: -321
Score: 3.9
Sequence: ATGTCTTACAACAA
Locus tag: ESCAB7627_2810
ESCAB7627_2810 -324 3.9 TTGATGTCTTACAA
-321 3.9 ATGTCTTACAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ynfG
Ortholog function: Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.99.-)
Citrobacter koseri ATCC BAA-895 CKO_01583 -32 4.3
Enterobacter sp. 638 Ent638_1419 -3 3.8 TCTATGAAAATCAA
Escherichia coli str. K-12 substr. MG1655 b0895 -184 4.3 TTGATACCGAACAA
Escherichia coli str. K-12 substr. MG1655 b1589 -113 4.1 TTGATATGGATTAA
Salmonella typhimurium LT2 STM0965 -96 4.2
Salmonella typhimurium LT2 STM1497 -116 3.7 TTGACATGGATTAA
Position: -102
Score: 3.6
Sequence: TTGCTTAACGTCAC
Locus tag: ESCAB7627_3000
ESCAB7627_3000 -102 3.6 TTGCTTAACGTCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: gdhA
Ortholog function: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0051 -232 4.7 TTGTTATATAACAA
Escherichia coli str. K-12 substr. MG1655 b1761 -397 3.9 TTGATCCTGATAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0122 -272 4 ATGATGAATGACAA
Proteus mirabilis HI4320 PMI3008 -176 3.6 TTTAGTGAGGTCAA
Salmonella typhimurium LT2 STM1299 -51 3.4 CTGATAAAACGCAA
Yersinia pestis KIM y3858 -231 3.6 TTGAGTAACGTTAA
Position: -166
Score: 3.2
Sequence: GTTATAAATATCAG
Locus tag: ESCAB7627_3583
ESCAB7627_3583 -166 3.2 GTTATAAATATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: moeA
Ortholog function: Molybdopterin biosynthesis protein MoeA
Edwardsiella tarda EIB202 ETAE_1153 -335 3.8 ATGATACAGATCAC
Enterobacter sp. 638 Ent638_1321 -155 3.3 TCTATAAATATCAT
Erwinia amylovora ATCC 49946 EAM_1284 -244 3.5 CTGTGATAAATCAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2836 -383 3.7 ATGATGTAAAGCAG
Escherichia coli str. K-12 substr. MG1655 b0827 18 3.7 TTGATGTCGCTCGA
Photorhabdus luminescens subsp. laumondii TTO1 plu1540 -244 3.9 TTGACAGTGGTCAA
Proteus mirabilis HI4320 PMI0637 -182 3.7 TTAAAATACAACAA
Yersinia pestis KIM y2673 -202 3.8 TTGATATATATATA
Position: -67
Score: 4.8
Sequence: TTGATGCACATCAA
Locus tag: ESCAB7627_3590
ESCAB7627_3590 -67 4.8 TTGATGCACATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybiY
Ortholog function: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Citrobacter koseri ATCC BAA-895 CKO_02286 -70 4.1 TTGACCTGCGTCAA
Edwardsiella tarda EIB202 ETAE_0451 -71 5.2 TTGATCAAAATCAA
Enterobacter sp. 638 Ent638_1318 -68 4.4 TTGACGCACATCAA
Escherichia coli str. K-12 substr. MG1655 b0824 -67 4.4 TTGACGCACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00858 -69 4.7 TTGATTTGCGTCAA
Salmonella typhimurium LT2 STM0844 -69 4.4 TTGACGCACATCAA
Serratia proteamaculans 568 Spro_2641 -76 5.1 TTGATCGAAATCAA
Position: 9
Score: 3.9
Sequence: CTGACCCATATCAA
Locus tag: ESCAB7627_3631
ESCAB7627_3631 9 3.9 CTGACCCATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaC
Ortholog function: Molybdenum cofactor biosynthesis protein MoaC
Citrobacter koseri ATCC BAA-895 CKO_02343 -253 4.7 CTGATGTATATCAA
Edwardsiella tarda EIB202 ETAE_2346 -380 3.9 GTGACATGTATCAA
Enterobacter sp. 638 Ent638_1275 -236 4.4 ATGACGTATATCAA
Erwinia amylovora ATCC 49946 EAM_1220 -212 4.2 TCGCTATATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2815 -321 3.5 ATGACCTGAGACAA
Escherichia coli str. K-12 substr. MG1655 b0783 -263 4.9 ATGATGTATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00812 -257 4 CTGACCGACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1500 -155 3.7 TCGTTTTACATTAA
Salmonella typhimurium LT2 STM0804 -264 5 ATGATATATATCAA
Serratia proteamaculans 568 Spro_1322 -312 3.7 GTGATTCCGGTCAA
Yersinia pestis KIM y3021 -222 3.7 GTGATGATCAACAA
Position: -263
Score: 4.8
Sequence: ATGATGTACATCAA
Locus tag: ESCAB7627_3633
ESCAB7627_3633 -263 4.8 ATGATGTACATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaA
Ortholog function: Molybdenum cofactor biosynthesis protein MoaA
Citrobacter koseri ATCC BAA-895 CKO_02345 -253 4.7 CTGATGTATATCAA
Edwardsiella tarda EIB202 ETAE_2347 -380 3.9 GTGACATGTATCAA
Enterobacter sp. 638 Ent638_1273 -236 4.4 ATGACGTATATCAA
Erwinia amylovora ATCC 49946 EAM_1218 -212 4.2 TCGCTATATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2817 -321 3.5 ATGACCTGAGACAA
Escherichia coli str. K-12 substr. MG1655 b0781 -263 4.9 ATGATGTATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00810 -257 4 CTGACCGACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1499 -155 3.7 TCGTTTTACATTAA
Salmonella typhimurium LT2 STM0802 -264 5 ATGATATATATCAA
Serratia proteamaculans 568 Spro_1320 -312 3.7 GTGATTCCGGTCAA
Yersinia pestis KIM y3023 -310 4.3 GTGATTTTAAACAA
Position: -147
Score: 4.7
Sequence: TTGATGTACATCAT
Locus tag: ESCAB7627_3634
ESCAB7627_3634 -147 4.7 TTGATGTACATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybhK
Ortholog function: Predicted transferase, NAD(P)-binding
Edwardsiella tarda EIB202 ETAE_2348 -92 3.9 TTGATACATGTCAC
Enterobacter sp. 638 Ent638_1272 -90 4.5 TTGATATACGTCAT
Erwinia amylovora ATCC 49946 EAM_1217 -88 4 TTGATATATAGCGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2818 -117 3.7 ATGAGCTTACTCAA
Escherichia coli str. K-12 substr. MG1655 b0780 -147 4.8 TTGATATACATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00809 -91 4 TTGATGTCGGTCAG
Salmonella typhimurium LT2 STM0801 -146 4.8 TTGATATATATCAT
Yersinia pestis KIM y3024 -190 4.2 TTGTTTAAAATCAC
Position: -92
Score: 3.6
Sequence: ATGTGAAAAAACAA
Locus tag: ESCAB7627_3751
ESCAB7627_3751 -92 3.6 ATGTGAAAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Citrobacter koseri ATCC BAA-895 CKO_02438 25 3.6 ATGTGAAAAAACAA
Edwardsiella tarda EIB202 ETAE_2588 10 4
Escherichia coli str. K-12 substr. MG1655 b0721 10 3.6 ATGTGAAAAAACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00728 -104 3.6 ATGTGAAAAAACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1426 -127 4 TTGTGAAAAAACAA
Proteus mirabilis HI4320 PMI0565 -2 4 TTGTGAAAAAACAA
Salmonella typhimurium LT2 STM0732 10 3.6 ATGTGAAAAAACAA
Serratia proteamaculans 568 Spro_1263 -249 4.1 GTGATCTAAATCAC
Yersinia pestis KIM y3071 -224 3.8 ATGTTATCAATCAG
Position: -173
Score: 3.6
Sequence: TTATTCGTCATCAA
Locus tag: ESCAB7627_3752
ESCAB7627_3752 -173 3.6 TTATTCGTCATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltA
Ortholog function: Citrate synthase (EC 2.3.3.1)
Citrobacter koseri ATCC BAA-895 CKO_02439 -67 3.8 TTGATTTATGTAAC
Enterobacter sp. 638 Ent638_1221 -147 3.6 TCGCGCTAGATCAA
Erwinia amylovora ATCC 49946 EAM_1167 -171 3.7 ATGATACTCATCAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4121 -185 4.8 TTTATCTAAATCAA
Escherichia coli str. K-12 substr. MG1655 b0720 -173 3.6 TTATTCGTCATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00489 28 3.6 TTGCCGGACAACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1425 -110 3.6 TTGATGACAAAGAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3138 -56 3.8 CCTATTTAAATCAA
Salmonella typhimurium LT2 STM0730 -213 3.9 TCGAAATTAATCAA
Position: -74
Score: 4.9
Sequence: ATGATCTATATCAA
Locus tag: ESCAB7627_2091
ESCAB7627_2091 -74 4.9 ATGATCTATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: focA
Ortholog function: Formate efflux transporter (TC 2.A.44 family)
Citrobacter koseri ATCC BAA-895 CKO_02167 -116 4.9 ATGATCTATATCAA
Edwardsiella tarda EIB202 ETAE_2181 -117 4.2 ATGATCCATGTCAA
Enterobacter sp. 638 Ent638_1424 -74 4.9 ATGATCTATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2596 -228 4 ATGATTTTTATTAA
-75 4.5 ATGATCCACATCAA
Escherichia coli str. K-12 substr. MG1655 b0904 -74 4.9 ATGATCTATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00932 -117 4.9 ATGATCTATATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1614 -267 4.1 TTTATTTGCAACAA
-159 4.7 TTTATTAAAATCAA
-84 4.9 ATGATCTATATCAA
Proteus mirabilis HI4320 PMI0706 -159 4.1 TTATTATTAATCAA
-85 4.5 ATGATCCATATCAA
Salmonella typhimurium LT2 STM0974 -74 4.9 ATGATCTATATCAA
Serratia proteamaculans 568 Spro_1703 -143 3.9 ATAATTTAACTCAA
-81 4.6 ATGATCCAAATCAA
Yersinia pestis KIM y2789 -80 4.5 ATGATCCATATCAA
Position: -184
Score: 4.2
Sequence: TTGATACCGAACAA
Position: -117
Score: 3.7
Sequence: TTGTTGATTTTCAA
Locus tag: ESCAB7627_2146
ESCAB7627_2146 -184 4.2 TTGATACCGAACAA
-117 3.7 TTGTTGATTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dmsA
Ortholog function: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
Citrobacter koseri ATCC BAA-895 CKO_02177 -117 3.6 CTGATTTTTCTCAT
Enterobacter sp. 638 Ent638_1418 -3 3.8 TCTATGAAAATCAA
Escherichia coli str. K-12 substr. MG1655 b0894 -184 4.3 TTGATACCGAACAA
Salmonella typhimurium LT2 STM0964 -96 4.2
Yersinia pestis KIM y0864 -199 4.2 TTGATTCCAGACAA
Position: -238
Score: 3.6
Sequence: TTGTTATATATCTG
Position: -193
Score: 3.7
Sequence: ATCACAAAAATCAA
Position: -132
Score: 3.6
Sequence: ATGATAACCATAAA
Locus tag: ESCAB7627_3466
ESCAB7627_3466 -238 3.6 TTGTTATATATCTG
-193 3.7 ATCACAAAAATCAA
-132 3.6 ATGATAACCATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yecR
Ortholog function: putative outer membrane lipoprotein
Escherichia coli str. K-12 substr. MG1655 b1904 -179 3.7 GTGATACAAATCAC
Position: -72
Score: 5.4
Sequence: TTGATTTACATCAA
Locus tag: ESCAB7627_3885
ESCAB7627_3885 -72 5.4 TTGATTTACATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirB
Ortholog function: Nitrite reductase, large subunit (EC 1.7.1.4)
Citrobacter koseri ATCC BAA-895 CKO_04789 -72 5.4 TTGATTTACATCAA
Enterobacter sp. 638 Ent638_3793 -72 5 TTGATTTGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4079 -71 5.3 TTGATATACATCAA
Escherichia coli str. K-12 substr. MG1655 b3365 -72 5.4 TTGATTTACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03752 -72 5 TTGATTTGCATCAA
Proteus mirabilis HI4320 PMI1479 -72 5.1 TTGATATTCATCAA
Salmonella typhimurium LT2 STM3474 -72 5.4 TTGATTTACATCAA
Serratia proteamaculans 568 Spro_4595 -72 5 TTGATTTGCATCAA
Yersinia pestis KIM y3945 -71 5.4 TTGATTTACATCAA
Position: -125
Score: 4
Sequence: CTGACCTGAATCAA
Locus tag: ESCAB7627_4031
ESCAB7627_4031 -125 4 CTGACCTGAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pfkA
Ortholog function: 6-phosphofructokinase (EC 2.7.1.11)
Citrobacter koseri ATCC BAA-895 CKO_03085 -132 4 CTGACCTGAATCAA
Edwardsiella tarda EIB202 ETAE_3450 -223 4 CTGACCTGAATCAA
Enterobacter sp. 638 Ent638_4056 -174 4 CTGACCTGAATCAA
Erwinia amylovora ATCC 49946 EAM_0103 -31 4 ATTATTTGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4307 -140 4 CTGACCTGAATCAA
Escherichia coli str. K-12 substr. MG1655 b3916 -125 4 CTGACCTGAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04223 -123 4 CTGACCTGAATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4774 -203 4.1 TTGATCTCAAAAAA
Proteus mirabilis HI4320 PMI3203 -194 3.7 TTAATGCGCATCAA
Salmonella typhimurium LT2 STM4062 -126 4 CTGACCTGAATCAA
Serratia proteamaculans 568 Spro_4807 -145 4.1 GTGACTTGAATCAA
Yersinia pestis KIM y0059 -148 4.2 CTGACTTGAATCAA
Position: -141
Score: 3.6
Sequence: TTATTCACGATCAA
Position: -126
Score: 3.8
Sequence: TTGATCTACATCTC
Locus tag: ESCAB7627_4067
ESCAB7627_4067 -141 3.6 TTATTCACGATCAA
-126 3.8 TTGATCTACATCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: katG
Ortholog function: Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7)
Escherichia coli str. K-12 substr. MG1655 b3942 -141 4.4 TTAATTAAGATCAA
-126 3.8 TTGATCTACATCTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01819 -248 4.1 TTGTCATATCTCAA
Salmonella typhimurium LT2 STM4106 -126 3.8 TTGATCTACATCTC
Serratia proteamaculans 568 Spro_3192 -139 3.7 TTATTTAAAATCAG
Position: -132
Score: 3.2
Sequence: GTTTTTAATGTCAA
Locus tag: ESCAB7627_2265
ESCAB7627_2265 -132 3.2 GTTTTTAATGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gnd
Ortholog function: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Citrobacter koseri ATCC BAA-895 CKO_00756 -337 4 TTGATTACTATCTA
Enterobacter sp. 638 Ent638_2642 -112 3.7 GTGACATAGATCAG
Erwinia amylovora ATCC 49946 EAM_2150 -264 3.8 TTCTCTTAAGTCAA
-169 4 TTTTTTTTAAACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1444 -228 3.3 TTGAGTGGTAACAT
Escherichia coli str. K-12 substr. MG1655 b2029 -375 3.4 ATGGCTTCGATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02499 -322 3.7 TTTTTATAGTTCAA
Proteus mirabilis HI4320 PMI0655 -7 3.7 TTATTTCATGTCAA
Serratia proteamaculans 568 Spro_1608 -384 3.3 ATTATTTGAATTAA
Position: -142
Score: 5
Sequence: TTGATTAAAAACAA
Locus tag: ESCAB7627_4869
ESCAB7627_4869 -142 5 TTGATTAAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: Nitrite reductase, cytochrome c(552)
Citrobacter koseri ATCC BAA-895 CKO_03814 -146 4.7 TTGATTAAAGACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1875 -135 4.8 TTGATCAAAAACAA
Escherichia coli str. K-12 substr. MG1655 b4070 -141 4.7 TTGATTAAAGACAA
Salmonella typhimurium LT2 STM4277 -143 4.7 TTGATTAAAGACAA
Position: -17
Score: 3.4
Sequence: TTGAGGTAAAGCGA
Locus tag: ESCAB7627_4878
ESCAB7627_4878 -17 3.4 TTGAGGTAAAGCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: soxR
Ortholog function: redox-sensitive transcriptional activator (MerR-family transcriptional regulator)
Citrobacter koseri ATCC BAA-895 CKO_03827 -17 3.4 TTGAGGTAAAGCGA
Escherichia coli str. K-12 substr. MG1655 b4063 -17 3.4 TTGAGGTAAAGCGA
Proteus mirabilis HI4320 PMI2705 -69 3.4 TTGTATTGGGACAA
16 3.7 TAGATTTTAATCGA
Salmonella typhimurium LT2 STM4266 -17 3.4 TTGAGGTAAAGCGA
Position: -82
Score: 3.8
Sequence: TCGCTTTACCTCAA
Locus tag: ESCAB7627_4879
ESCAB7627_4879 -82 3.8 TCGCTTTACCTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: soxS
Ortholog function: AraC-family transcriptional regulator
Citrobacter koseri ATCC BAA-895 CKO_03828 -83 3.8 TCGCTTTACCTCAA
Enterobacter sp. 638 Ent638_0266 -217 3.8 ATGCTTTTAATCAG
Escherichia coli str. K-12 substr. MG1655 b4062 -82 3.8 TCGCTTTACCTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04462 -95 3.4 TTCTTTTCCATAAA
Salmonella typhimurium LT2 STM4265 -83 3.8 TCGCTTTACCTCAA
Position: -110
Score: 4.4
Sequence: TTGCGCTAAATCAA
Locus tag: ESCAB7627_1210
ESCAB7627_1210 -110 4.4 TTGCGCTAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Escherichia coli str. K-12 substr. MG1655 b0873 -110 4.4 TTGCGCTAAATCAA
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