Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of KdgR regulog to Yersinia bercovieri ATCC 43970

Reference regulog properties
Source regulog: KdgR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: IclR
Regulation mode: repressor (activator)
Biological process: Pectin and polygalacturonate utlization
Effector: 2-keto-3-deoxygluconate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Yersinia bercovieri ATCC 43970
Orthologous TF(s) YberA_01000673
Regulated genes 17
Built upon 159 sites [see more]
Predicted regulatory interactions in Yersinia bercovieri ATCC 43970
Locus tag Position Score Sequence
Position: -105
Score: 5.5
Sequence: ATTTAAAACGTCGTTTTAATA
Locus tag: YberA_01000151
YberA_01000151 -105 5.5 ATTTAAAACGTCGTTTTAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgK
Ortholog function: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Yersinia pestis KIM y3838 -225 5.1 ATTTAAAACACCGTTTTAATC
Serratia proteamaculans 568 Spro_4750 -105 6.2 AAATAAAACGTTGTTTTATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4360 -125 5.4 AAATAAAACATCGTTTCAAGA
Edwardsiella tarda EIB202 ETAE_3377 -91 5.4 AAACAGAACGTTGTTTTATTT
Position: -99
Score: 5.3
Sequence: AATTGAAATGTTGTTTTACTA
Locus tag: YberA_01000358
YberA_01000358 -99 5.3 AATTGAAATGTTGTTTTACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: spiX
Ortholog function: predicted 5-keto-4-deoxyuronate isomerase
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1742 -54 5.1 AATTGAAATACAGTTTTAAAA
Position: -138
Score: 4.9
Sequence: TGGTGAAATTCCGTTTCATTT
Locus tag: YberA_01000513
YberA_01000513 -138 4.9 TGGTGAAATTCCGTTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yeeO
Ortholog function: predicted multidrug efflux system, MATE family
Escherichia coli str. K-12 substr. MG1655 b1985 -7 4.9 ATTTGAAATGTGGTTTCACTT
Salmonella typhimurium LT2 STM2013 -7 5 TATTGAAATGTGGTTTCAACT
Citrobacter koseri ATCC BAA-895 CKO_00837 -7 4.9 ATTTGAAATGAGGTTTCAACT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02447 -40 5.1 ATTTGAAATGTTGTTTCAACA
Enterobacter sp. 638 Ent638_2574 -74 5 ATTTGAAATGTAGTTTCAACT
Yersinia pestis KIM y2593 -158 4.8 TCATGAAACTATGTTCCATTT
Serratia proteamaculans 568 Spro_3106 -39 5.2 ATTTGAAATGTTGTTTCACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2762 -140 5.1 AATAGAAACGTCATTTTAAAA
Position: -276
Score: 4.9
Sequence: ATACGAACCGTCGTTTCAGTT
Locus tag: YberA_01000554
YberA_01000554 -276 4.9 ATACGAACCGTCGTTTCAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pykF
Ortholog function: Pyruvate kinase (EC 2.7.1.40)
Escherichia coli str. K-12 substr. MG1655 b1676 -286 5 TTTTGAAACGCTGTTTTTGTT
Salmonella typhimurium LT2 STM1378 -286 4.7 TTTTGAAACAGGGTTTTCATT
Citrobacter koseri ATCC BAA-895 CKO_01709 -286 5 TTTTGAAACGCTGTTTTCATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02133 -285 5 ATTTGAAACGAGGTTTTTATT
Enterobacter sp. 638 Ent638_1768 -286 5.1 TTTTGAAACGCCGTTTCCATT
Serratia proteamaculans 568 Spro_2187 -203 4.1 AAtaacAACAcatTTTCATcT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1867 -259 5.1 ATACGGAACGTCGTTTCAATT
Position: -98
Score: 5.7
Sequence: AAATGAAACATCGTTTCTATA
Locus tag: YberA_01000672
YberA_01000672 -98 5.7 AAATGAAACATCGTTTCTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ogl
Ortholog function: Oligogalacturonate lyase (EC 4.2.2.6)
Enterobacter sp. 638 Ent638_3293 -226 5.1 AATTAAAACGCCGTTTTACAA
Yersinia pestis KIM y1875 -96 5.8 AAATGAAACATTGTTTCTATA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2426 -180 5.8 AAATGAAACATTGTTTCTATA
Position: -76
Score: 4.7
Sequence: AATAAAACCACTGTTCTATTT
Locus tag: YberA_01000673
YberA_01000673 -76 4.7 AATAAAACCACTGTTCTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgR
Ortholog function: 2-keto-3-deoxy-D-gluconate repressor, IclR family
Yersinia pestis KIM y1876 -76 4.7 AATAAAACCATTGTTCTATTT
Position: -76
Score: 5.2
Sequence: GATTGAAACGATGTTTCTATT
Locus tag: YberA_01000683
YberA_01000683 -76 5.2 GATTGAAACGATGTTTCTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pelW
Ortholog function: Exopolygalacturonate lyase (EC 4.2.2.9)
Yersinia pestis KIM y1885 -152 4.5 AATCAAAACAACGTTCCGACT
-76 5.2 GATTGAAACGATGTTTCTATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2402 -139 4.5 AATCAAAACAACGTTCCGACT
-61 5.3 AATCAAAACAGTGTTTCTATT
Position: -277
Score: 6
Sequence: TAATAAAACATCATTTCATTT
Locus tag: YberA_01000684
YberA_01000684 -277 6 TAATAAAACATCATTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kduD
Ortholog function: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
Yersinia pestis KIM y1886 -201 6 TAATAAAACATCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2401 -209 6.1 AAATAAAACATTATTTCATTT
Position: -163
Score: 6
Sequence: AAATGAAATGATGTTTTATTA
Locus tag: YberA_01000685
YberA_01000685 -163 6 AAATGAAATGATGTTTTATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgF
Ortholog function: Pectin degradation protein KdgF
Citrobacter koseri ATCC BAA-895 CKO_04218 -38 5.6 AGTTGAAACATTGTTTCAATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03255 -39 5.8 AAATGAAACAATGTTTCACTT
Enterobacter sp. 638 Ent638_3287 -38 5.5 AATTAAAACAATGTTTCACTA
Yersinia pestis KIM y1888 -155 6 AAATGAAATGATGTTTTATTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2399 -174 6.1 AAATGAAATAATGTTTTATTT
Position: -36
Score: 5.5
Sequence: TTATAAAACAGCGTTTCTTTA
Locus tag: YberA_01001950
YberA_01001950 -36 5.5 TTATAAAACAGCGTTTCTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pehX
Ortholog function: Exo-poly-alpha-D-galacturonosidase precursor (EC 3.2.1.82)
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3111 -291 4.9 TAATGAAACCATGTTTTACCA
Position: -115
Score: 5.9
Sequence: ATATGAAACGGCGTTTTATTT
Locus tag: YberA_01002608
YberA_01002608 -115 5.9 ATATGAAACGGCGTTTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygjV
Ortholog function: putative transport protein
Escherichia coli str. K-12 substr. MG1655 b3090 -64 5.4 ATAAAAAACGGCGTTTCATAA
Yersinia pestis KIM y3597 -133 5.2 ATATGAAACGGTGTTCTGTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0648 -70 6.2 AAATAAAACGGCGTTTCATTT
Position: -43
Score: 5.5
Sequence: TAATGGAACGTTATTTCATTT
Locus tag: YberA_01003258
YberA_01003258 -43 5.5 TAATGGAACGTTATTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjgK
Ortholog function: cytoplasmic protein involved in polygalacturonate utilization
Escherichia coli str. K-12 substr. MG1655 b4252 -35 6 AAATGAAACGTTGTTTTAATT
Salmonella typhimurium LT2 STM4468 -32 5.7 AAATAAAACGCTGTTTTAACT
Citrobacter koseri ATCC BAA-895 CKO_03553 -33 6.2 AAATGAAACGTTGTTTTATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04658 -33 5.8 AAATGAAATGCTGTTTTATAT
Enterobacter sp. 638 Ent638_0453 -34 6 AAATGAAACATTGTTTTATAT
Yersinia pestis KIM y0739 -41 5.9 TAATAAAACAGCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0383 -41 5.1 TTGTAAAACAGGGTTTCATTT
Edwardsiella tarda EIB202 ETAE_3112 -39 5.6 AAATAAAACGCAGTTTTATAA
Position: -153
Score: 5.3
Sequence: TAACGAAACATTATTCCATTT
Locus tag: YberA_01003301
YberA_01003301 -153 5.3 TAACGAAACATTATTCCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgX
Ortholog function: predicted 2-keto-3-deoxygluconate permease
Salmonella typhimurium LT2 STM4395 -34 5.8 AAATAAAACATTATTTTAATT
Citrobacter koseri ATCC BAA-895 CKO_03627 -31 5.2 AAATAAAACATTATTTCAAAG
Enterobacter sp. 638 Ent638_0375 -33 5.9 AATTGAAACGTCATTTTATTT
Yersinia pestis KIM y1734 -22 5.8 TAACGAAACATCATTTCATTT
Position: -37
Score: 6
Sequence: TAATAAAACATTGTTTCAATT
Locus tag: YberA_01003404
YberA_01003404 -37 6 TAATAAAACATTGTTTCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: togT
Ortholog function: Oligogalacturonide transporter
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02398 -46 5.2 TATAAAAACAGTGTTTCAAAA
Yersinia pestis KIM y2961 -47 4.5 AAAGAAAACAGTTATTCATTA
-25 6.1 AAATGAAACATTGTTTTAATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0817 -60 4.5 TAAAGAAATGATAGTTCAATC
-38 5.5 AACTGAAATATTGTTTCATAT
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