Propagation of KdgR regulog to Yersinia mollaretii ATCC 43969
Source regulog: | KdgR - Enterobacteriales |
Regulator type: | Transcription factor |
Regulator family: | IclR |
Regulation mode: | repressor (activator) |
Biological process: | Pectin and polygalacturonate utlization |
Effector: | 2-keto-3-deoxygluconate |
Phylum: | Proteobacteria/gamma |
Propagated regulon: | |
Target genome | Yersinia mollaretii ATCC 43969 |
Orthologous TF(s) | YmolA_01002186 |
Regulated genes | 16 |
Locus tag | Position | Score | Sequence | |
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Position: -99
Score: 5.3 Sequence: AATTGAAATGTTGTTTTACTA
Locus tag: YmolA_01000122
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YmolA_01000122 | -99 | 5.3 | AATTGAAATGTTGTTTTACTA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: spiX | ||||
Ortholog function: predicted 5-keto-4-deoxyuronate isomerase | ||||
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1742 | -54 | 5.1 | AATTGAAATACAGTTTTAAAA |
Position: -117
Score: 6 Sequence: ATATGAAACGGTGTTTTATTT
Locus tag: YmolA_01000272
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YmolA_01000272 | -117 | 6 | ATATGAAACGGTGTTTTATTT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: ygjV | ||||
Ortholog function: putative transport protein | ||||
Escherichia coli str. K-12 substr. MG1655 | b3090 | -64 | 5.4 | ATAAAAAACGGCGTTTCATAA |
Yersinia pestis KIM | y3597 | -133 | 5.2 | ATATGAAACGGTGTTCTGTTT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0648 | -70 | 6.2 | AAATAAAACGGCGTTTCATTT |
Position: -105
Score: 5.5 Sequence: ATTTAAAACGTCGTTTTAATA
Locus tag: YmolA_01000720
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YmolA_01000720 | -105 | 5.5 | ATTTAAAACGTCGTTTTAATA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: kdgK | ||||
Ortholog function: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) | ||||
Yersinia pestis KIM | y3838 | -225 | 5.1 | ATTTAAAACACCGTTTTAATC |
Serratia proteamaculans 568 | Spro_4750 | -105 | 6.2 | AAATAAAACGTTGTTTTATTT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4360 | -125 | 5.4 | AAATAAAACATCGTTTCAAGA |
Edwardsiella tarda EIB202 | ETAE_3377 | -91 | 5.4 | AAACAGAACGTTGTTTTATTT |
Position: -67
Score: 6 Sequence: TAATGAAACATTGTTTTAATT
Locus tag: YmolA_01001115
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YmolA_01001115 | -67 | 6 | TAATGAAACATTGTTTTAATT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: togT | ||||
Ortholog function: Oligogalacturonide transporter | ||||
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02398 | -46 | 5.2 | TATAAAAACAGTGTTTCAAAA |
Yersinia pestis KIM | y2961 | -47 | 4.5 | AAAGAAAACAGTTATTCATTA |
-25 | 6.1 | AAATGAAACATTGTTTTAATT | ||
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0817 | -60 | 4.5 | TAAAGAAATGATAGTTCAATC |
-38 | 5.5 | AACTGAAATATTGTTTCATAT | ||
Position: -275
Score: 4.9 Sequence: ATACGAACCGTCGTTTCAGTT
Locus tag: YmolA_01001480
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YmolA_01001480 | -275 | 4.9 | ATACGAACCGTCGTTTCAGTT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: pykF | ||||
Ortholog function: Pyruvate kinase (EC 2.7.1.40) | ||||
Escherichia coli str. K-12 substr. MG1655 | b1676 | -286 | 5 | TTTTGAAACGCTGTTTTTGTT |
Salmonella typhimurium LT2 | STM1378 | -286 | 4.7 | TTTTGAAACAGGGTTTTCATT |
Citrobacter koseri ATCC BAA-895 | CKO_01709 | -286 | 5 | TTTTGAAACGCTGTTTTCATT |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02133 | -285 | 5 | ATTTGAAACGAGGTTTTTATT |
Enterobacter sp. 638 | Ent638_1768 | -286 | 5.1 | TTTTGAAACGCCGTTTCCATT |
Serratia proteamaculans 568 | Spro_2187 | -203 | 4.1 | AAtaacAACAcatTTTCATcT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1867 | -259 | 5.1 | ATACGGAACGTCGTTTCAATT |
Position: -76
Score: 5.2 Sequence: GATTGAAACGATGTTTCTATT
Locus tag: YmolA_01001668
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YmolA_01001668 | -76 | 5.2 | GATTGAAACGATGTTTCTATT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: pelW | ||||
Ortholog function: Exopolygalacturonate lyase (EC 4.2.2.9) | ||||
Yersinia pestis KIM | y1885 | -152 | 4.5 | AATCAAAACAACGTTCCGACT |
-76 | 5.2 | GATTGAAACGATGTTTCTATT | ||
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2402 | -139 | 4.5 | AATCAAAACAACGTTCCGACT |
-61 | 5.3 | AATCAAAACAGTGTTTCTATT | ||
Position: -276
Score: 6 Sequence: TAATAAAACATCATTTCATTT
Locus tag: YmolA_01001669
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YmolA_01001669 | -276 | 6 | TAATAAAACATCATTTCATTT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: kduD | ||||
Ortholog function: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) | ||||
Yersinia pestis KIM | y1886 | -201 | 6 | TAATAAAACATCATTTCATTT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2401 | -209 | 6.1 | AAATAAAACATTATTTCATTT |
Position: -157
Score: 6 Sequence: AAATGAAATGATGTTTTATTA
Locus tag: YmolA_01001670
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YmolA_01001670 | -157 | 6 | AAATGAAATGATGTTTTATTA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: kdgF | ||||
Ortholog function: Pectin degradation protein KdgF | ||||
Citrobacter koseri ATCC BAA-895 | CKO_04218 | -38 | 5.6 | AGTTGAAACATTGTTTCAATA |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03255 | -39 | 5.8 | AAATGAAACAATGTTTCACTT |
Enterobacter sp. 638 | Ent638_3287 | -38 | 5.5 | AATTAAAACAATGTTTCACTA |
Yersinia pestis KIM | y1888 | -155 | 6 | AAATGAAATGATGTTTTATTA |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2399 | -174 | 6.1 | AAATGAAATAATGTTTTATTT |
Position: -97
Score: 5.2 Sequence: AAATGAAACATCGTTCCTATA
Locus tag: YmolA_01002185
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YmolA_01002185 | -97 | 5.2 | AAATGAAACATCGTTCCTATA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: ogl | ||||
Ortholog function: Oligogalacturonate lyase (EC 4.2.2.6) | ||||
Enterobacter sp. 638 | Ent638_3293 | -226 | 5.1 | AATTAAAACGCCGTTTTACAA |
Yersinia pestis KIM | y1875 | -96 | 5.8 | AAATGAAACATTGTTTCTATA |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2426 | -180 | 5.8 | AAATGAAACATTGTTTCTATA |
Position: -76
Score: 4.7 Sequence: AATAAAACCACTGTTCTATTT
Locus tag: YmolA_01002186
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YmolA_01002186 | -76 | 4.7 | AATAAAACCACTGTTCTATTT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: kdgR | ||||
Ortholog function: 2-keto-3-deoxy-D-gluconate repressor, IclR family | ||||
Yersinia pestis KIM | y1876 | -76 | 4.7 | AATAAAACCATTGTTCTATTT |
Position: -36
Score: 5.8 Sequence: TAACGAAACATTATTTCATTT
Locus tag: YmolA_01002728
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YmolA_01002728 | -36 | 5.8 | TAACGAAACATTATTTCATTT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: kdgX | ||||
Ortholog function: predicted 2-keto-3-deoxygluconate permease | ||||
Salmonella typhimurium LT2 | STM4395 | -34 | 5.8 | AAATAAAACATTATTTTAATT |
Citrobacter koseri ATCC BAA-895 | CKO_03627 | -31 | 5.2 | AAATAAAACATTATTTCAAAG |
Enterobacter sp. 638 | Ent638_0375 | -33 | 5.9 | AATTGAAACGTCATTTTATTT |
Yersinia pestis KIM | y1734 | -22 | 5.8 | TAACGAAACATCATTTCATTT |
Position: -38
Score: 5.2 Sequence: TTATAAAACATCGTTTCTAAT
Locus tag: YmolA_01003311
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YmolA_01003311 | -38 | 5.2 | TTATAAAACATCGTTTCTAAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: pehX | ||||
Ortholog function: Exo-poly-alpha-D-galacturonosidase precursor (EC 3.2.1.82) | ||||
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3111 | -291 | 4.9 | TAATGAAACCATGTTTTACCA |
Position: -43
Score: 5.5 Sequence: TAATGGAACGTTATTTCATTT
Locus tag: YmolA_01003710
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YmolA_01003710 | -43 | 5.5 | TAATGGAACGTTATTTCATTT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: yjgK | ||||
Ortholog function: cytoplasmic protein involved in polygalacturonate utilization | ||||
Escherichia coli str. K-12 substr. MG1655 | b4252 | -35 | 6 | AAATGAAACGTTGTTTTAATT |
Salmonella typhimurium LT2 | STM4468 | -32 | 5.7 | AAATAAAACGCTGTTTTAACT |
Citrobacter koseri ATCC BAA-895 | CKO_03553 | -33 | 6.2 | AAATGAAACGTTGTTTTATTT |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04658 | -33 | 5.8 | AAATGAAATGCTGTTTTATAT |
Enterobacter sp. 638 | Ent638_0453 | -34 | 6 | AAATGAAACATTGTTTTATAT |
Yersinia pestis KIM | y0739 | -41 | 5.9 | TAATAAAACAGCATTTCATTT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0383 | -41 | 5.1 | TTGTAAAACAGGGTTTCATTT |
Edwardsiella tarda EIB202 | ETAE_3112 | -39 | 5.6 | AAATAAAACGCAGTTTTATAA |