Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of KdgR regulog to Yersinia pseudotuberculosis IP 32953

Reference regulog properties
Source regulog: KdgR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: IclR
Regulation mode: repressor (activator)
Biological process: Pectin and polygalacturonate utlization
Effector: 2-keto-3-deoxygluconate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Yersinia pseudotuberculosis IP 32953
Orthologous TF(s) YPTB2367
Regulated genes 17
Built upon 159 sites [see more]
Predicted regulatory interactions in Yersinia pseudotuberculosis IP 32953
Locus tag Position Score Sequence
Position: -41
Score: 5.9
Sequence: TAATAAAACAGCATTTCATTT
Locus tag: YPTB0525
YPTB0525 -41 5.9 TAATAAAACAGCATTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjgK
Ortholog function: cytoplasmic protein involved in polygalacturonate utilization
Escherichia coli str. K-12 substr. MG1655 b4252 -35 6 AAATGAAACGTTGTTTTAATT
Salmonella typhimurium LT2 STM4468 -32 5.7 AAATAAAACGCTGTTTTAACT
Citrobacter koseri ATCC BAA-895 CKO_03553 -33 6.2 AAATGAAACGTTGTTTTATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04658 -33 5.8 AAATGAAATGCTGTTTTATAT
Enterobacter sp. 638 Ent638_0453 -34 6 AAATGAAACATTGTTTTATAT
Yersinia pestis KIM y0739 -41 5.9 TAATAAAACAGCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0383 -41 5.1 TTGTAAAACAGGGTTTCATTT
Edwardsiella tarda EIB202 ETAE_3112 -39 5.6 AAATAAAACGCAGTTTTATAA
Position: -149
Score: 5.5
Sequence: AAATAGAATGGCGTTTCATTT
Locus tag: YPTB0569
YPTB0569 -149 5.5 AAATAGAATGGCGTTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pemA
Ortholog function: Putative pectinesterase (EC 3.1.1.11)
Yersinia pestis KIM y3757 -149 5.3 AAATGGAATTGCGTTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3253 -213 5.1 TATTAAAATAACATTTCACTT
Position: -37
Score: 6.1
Sequence: AAATGAAACATTGTTTTAATT
Locus tag: YPTB1263
YPTB1263 -37 6.1 AAATGAAACATTGTTTTAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: togT
Ortholog function: Oligogalacturonide transporter
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02398 -46 5.2 TATAAAAACAGTGTTTCAAAA
Yersinia pestis KIM y2961 -47 4.5 AAAGAAAACAGTTATTCATTA
-25 6.1 AAATGAAACATTGTTTTAATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0817 -60 4.5 TAAAGAAATGATAGTTCAATC
-38 5.5 AACTGAAATATTGTTTCATAT
Position: -275
Score: 4.3
Sequence: ATACGGACCGTCGTTTCAGTT
Locus tag: YPTB2306
YPTB2306 -275 4.3 ATACGGACCGTCGTTTCAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pykF
Ortholog function: Pyruvate kinase (EC 2.7.1.40)
Escherichia coli str. K-12 substr. MG1655 b1676 -286 5 TTTTGAAACGCTGTTTTTGTT
Salmonella typhimurium LT2 STM1378 -286 4.7 TTTTGAAACAGGGTTTTCATT
Citrobacter koseri ATCC BAA-895 CKO_01709 -286 5 TTTTGAAACGCTGTTTTCATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02133 -285 5 ATTTGAAACGAGGTTTTTATT
Enterobacter sp. 638 Ent638_1768 -286 5.1 TTTTGAAACGCCGTTTCCATT
Serratia proteamaculans 568 Spro_2187 -203 4.1 AAtaacAACAcatTTTCATcT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1867 -259 5.1 ATACGGAACGTCGTTTCAATT
Position: -155
Score: 6
Sequence: AAATGAAATGATGTTTTATTA
Locus tag: YPTB2355
YPTB2355 -155 6 AAATGAAATGATGTTTTATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgF
Ortholog function: Pectin degradation protein KdgF
Citrobacter koseri ATCC BAA-895 CKO_04218 -38 5.6 AGTTGAAACATTGTTTCAATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03255 -39 5.8 AAATGAAACAATGTTTCACTT
Enterobacter sp. 638 Ent638_3287 -38 5.5 AATTAAAACAATGTTTCACTA
Yersinia pestis KIM y1888 -155 6 AAATGAAATGATGTTTTATTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2399 -174 6.1 AAATGAAATAATGTTTTATTT
Position: -201
Score: 6
Sequence: TAATAAAACATCATTTCATTT
Locus tag: YPTB2356
YPTB2356 -201 6 TAATAAAACATCATTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kduI
Ortholog function: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Escherichia coli str. K-12 substr. MG1655 b2843 -130 6.3 AAATGAAACATTGTTTTATTT
-63 5.4 AAACGAAACAGTGTTTCACTA
Salmonella typhimurium LT2 STM3018 -123 6.2 AAATGAAACGTTGTTTTATTT
-58 5.3 AATCAAAACAGTGTTTTGATT
Citrobacter koseri ATCC BAA-895 CKO_04220 -119 6.2 AAATGAAACAACGTTTTATTT
-51 4.4 AAACGGAACGGTGTTTCGCCT
Enterobacter sp. 638 Ent638_3296 -127 5.4 AACTGAAACAACGTTTTAAAT
-60 5 AATCGGAACATTGTTTCGTTA
Yersinia pestis KIM y1887 -201 6 TAATAAAACATCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2400 -209 6.1 AAATAAAACATTATTTCATTT
Edwardsiella tarda EIB202 ETAE_1898 -129 5.6 AATCAAAACAGCATTTCATTT
Position: -76
Score: 5.2
Sequence: GATTGAAACGATGTTTCTATT
Locus tag: YPTB2358
YPTB2358 -76 5.2 GATTGAAACGATGTTTCTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pelW
Ortholog function: Exopolygalacturonate lyase (EC 4.2.2.9)
Yersinia pestis KIM y1885 -152 4.5 AATCAAAACAACGTTCCGACT
-76 5.2 GATTGAAACGATGTTTCTATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2402 -139 4.5 AATCAAAACAACGTTCCGACT
-61 5.3 AATCAAAACAGTGTTTCTATT
Position: -103
Score: 6
Sequence: AAATGAAACATTGTTTCTTTT
Locus tag: YPTB2363
YPTB2363 -103 6 AAATGAAACATTGTTTCTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgM
Ortholog function: Oligogalacturonate-specific porin protein KdgM
Yersinia pestis KIM y1880 -103 5.4 AAATGAAACATTGCTTCTTTT
Position: -76
Score: 4.7
Sequence: AATAAAACCATTGTTCTATTT
Locus tag: YPTB2367
YPTB2367 -76 4.7 AATAAAACCATTGTTCTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgR
Ortholog function: 2-keto-3-deoxy-D-gluconate repressor, IclR family
Yersinia pestis KIM y1876 -76 4.7 AATAAAACCATTGTTCTATTT
Position: -96
Score: 5.8
Sequence: AAATGAAACATTGTTTCTATA
Locus tag: YPTB2368
YPTB2368 -96 5.8 AAATGAAACATTGTTTCTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ogl
Ortholog function: Oligogalacturonate lyase (EC 4.2.2.6)
Enterobacter sp. 638 Ent638_3293 -226 5.1 AATTAAAACGCCGTTTTACAA
Yersinia pestis KIM y1875 -96 5.8 AAATGAAACATTGTTTCTATA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2426 -180 5.8 AAATGAAACATTGTTTCTATA
Position: -43
Score: 5.8
Sequence: TAACGAAACATCATTTCATTT
Locus tag: YPTB2498
YPTB2498 -43 5.8 TAACGAAACATCATTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgX
Ortholog function: predicted 2-keto-3-deoxygluconate permease
Salmonella typhimurium LT2 STM4395 -34 5.8 AAATAAAACATTATTTTAATT
Citrobacter koseri ATCC BAA-895 CKO_03627 -31 5.2 AAATAAAACATTATTTCAAAG
Enterobacter sp. 638 Ent638_0375 -33 5.9 AATTGAAACGTCATTTTATTT
Yersinia pestis KIM y1734 -22 5.8 TAACGAAACATCATTTCATTT
Position: -133
Score: 5.1
Sequence: ATATGAAACGGCGTTCTGTTT
Locus tag: YPTB3475
YPTB3475 -133 5.1 ATATGAAACGGCGTTCTGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygjV
Ortholog function: putative transport protein
Escherichia coli str. K-12 substr. MG1655 b3090 -64 5.4 ATAAAAAACGGCGTTTCATAA
Yersinia pestis KIM y3597 -133 5.2 ATATGAAACGGTGTTCTGTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0648 -70 6.2 AAATAAAACGGCGTTTCATTT
Position: -225
Score: 5.1
Sequence: ATTTAAAACACCGTTTTAATC
Locus tag: YPTB3830
YPTB3830 -225 5.1 ATTTAAAACACCGTTTTAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgK
Ortholog function: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Yersinia pestis KIM y3838 -225 5.1 ATTTAAAACACCGTTTTAATC
Serratia proteamaculans 568 Spro_4750 -105 6.2 AAATAAAACGTTGTTTTATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4360 -125 5.4 AAATAAAACATCGTTTCAAGA
Edwardsiella tarda EIB202 ETAE_3377 -91 5.4 AAACAGAACGTTGTTTTATTT
Position: -76
Score: 5.7
Sequence: AAATAAAATACTGTTTCATAA
Locus tag: YPTB3835
YPTB3835 -76 5.7 AAATAAAATACTGTTTCATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgM
Ortholog function: Oligogalacturonate-specific porin protein KdgM
Enterobacter sp. 638 Ent638_0483 -304 4.9 TCTCAAAACATCATTTCATTT
Yersinia pestis KIM y3833 -75 5.7 AAATAAAATACTGTTTCATAA
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