Propagation of Crp regulog to Yersinia intermedia ATCC 29909

Reference regulog properties
Source regulog:	Crp - Enterobacteriales
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	activator (repressor)
Biological process:	Carbon catabolism
Effector:	Cyclic 3',5'-AMP
Phylum:	Proteobacteria/gamma
Propagated regulon:
Target genome	Yersinia intermedia ATCC 29909
Orthologous TF(s)	YintA_01001957
Regulated genes	229

Built upon 2301 sites [see more]

Predicted regulatory interactions in *Yersinia intermedia ATCC 29909*
	Locus tag	Position	Score	Sequence
Position: -167 Score: 4.4 Sequence: AAACGTGACTGCCATCAAACAT Locus tag: YintA_01000053
	YintA_01000053	-167	4.4	AAACGTGACTGCCATCAAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ptsG
Ortholog function: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655	b1101	-154	4.4	AAACGTGATAGCCGTCAAACAA
Salmonella typhimurium LT2	STM1203	-155	4.4	AAACGTGATAGCCGTCAAACAA
Citrobacter koseri ATCC BAA-895	CKO_01957	-229	4.4	AAACGTGATAGCCGTCAAACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01099	-155	4.4	AAACGTGATAGCCGTCAAACAA
Enterobacter sp. 638	Ent638_1616	-155	4.4	AAACGTGATAGCCGTCAAACAA
Erwinia amylovora ATCC 49946	EAM_1466	-162	4.6	AAACGTGATAGCCATCAAACAA
Yersinia pestis KIM	y1767	-166	4.4	AAACGTGACGGCAATCAAACAT
Serratia proteamaculans 568	Spro_1914	-164	4.4	AAACGTGACTGTCATCAAACAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1805	-162	4.6	AAACGTGATAGCAATCAAACAT
Proteus mirabilis HI4320	PMI2292	-156	4.5	AAACGTGACAGCTATCATATAT

Position: -153 Score: 3.8 Sequence: AAAGTTGATATATATCAATTTT Locus tag: YintA_01000061
	YintA_01000061	-153	3.8	AAAGTTGATATATATCAATTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase (EC 1.6.99.3)
Escherichia coli str. K-12 substr. MG1655	b1109	-154	3.9	AAACTTGATTAACATCAATTTT
Salmonella typhimurium LT2	STM1211	-154	4.1	AAACTTGATGCACATCAATTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01106	-152	4.1	AAACTTGATGCACATCAATTTT
Enterobacter sp. 638	Ent638_1624	-153	4	AAACTTGATTCATATCAATTTT
Erwinia amylovora ATCC 49946	EAM_1473	-55	3.7	TAAGGTTATTTTATTAACCTTT
Yersinia pestis KIM	y1777	-152	3.8	AAAGTTGATATATATCAATTTT
Serratia proteamaculans 568	Spro_1926	-153	4.3	AAGTTTGATGTACATCAATTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1815	-153	4	TAAATTGATATATATCAATTTT
Edwardsiella tarda EIB202	ETAE_2070	-166	4.3	TTATTTGATTTGAATCAATTTT
Proteus mirabilis HI4320	PMI0875	-157	4.6	TTTTTTGATATAAATCAACTTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2821	-154	3.8	GAATTTGATGTTGTTCAATTTT

Position: -57 Score: 3.7 Sequence: ATATTTGATCATGATCACTTCC Locus tag: YintA_01000069
	YintA_01000069	-57	3.7	ATATTTGATCATGATCACTTCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepT
Ortholog function: peptidase T
Escherichia coli str. K-12 substr. MG1655	b1127	-73	3.6	AAAAGTGACCTGACGCAATATT
Salmonella typhimurium LT2	STM1227	-73	3.6	AAAAGTGACCTGACGCAATATT
Citrobacter koseri ATCC BAA-895	CKO_01926	-73	3.6	AAAAGTGACCTGACGCAATATT
Enterobacter sp. 638	Ent638_1640	-31	3.6	AAAAGTGACCTGACGCAATATT
Yersinia pestis KIM	y1791	-27	3.7	ATATTTGATCATGATCACTTCC
Serratia proteamaculans 568	Spro_2009	-188	4.1	CGTCGTGAAGAAGATCACACAT

Position: -233 Score: 3.9 Sequence: ATAAATGAACAGCGTCACATAA Position: -109 Score: 4 Sequence: TATTGTGACTATCATAATAGAT Locus tag: YintA_01000110
	YintA_01000110	-233	3.9	ATAAATGAACAGCGTCACATAA
		-109	4	TATTGTGACTATCATAATAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: manX
Ortholog function: PTS enzyme IIAB, mannose-specific
Yersinia pestis KIM	y2551	-231	3.9	ATAGATGAGCAATGTCACATAA

Position: -86 Score: 4.3 Sequence: ATATTTGATATTTATATCATTA Locus tag: YintA_01000186
	YintA_01000186	-86	4.3	ATATTTGATATTTATATCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lyxK
Ortholog function: L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-)
Escherichia coli str. K-12 substr. MG1655	b3580	-175	4.1	AAGTGTGCCGTAGTTCACGATC
Salmonella typhimurium LT2	STM3674	-187	4.5	AAGTGTGTTGCAGTTCACGATA
Citrobacter koseri ATCC BAA-895	CKO_05037	-177	4.1	AAGTGTGTTTCAGTTCACGATC
Serratia proteamaculans 568	Spro_3936	-182	4.8	AAACGTGTTGTCGATCACAAAT

Position: -64 Score: 4.3 Sequence: TATTGTGATCGCCATCACTTCC Locus tag: YintA_01000220
	YintA_01000220	-64	4.3	TATTGTGATCGCCATCACTTCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroH
Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase
Escherichia coli str. K-12 substr. MG1655	b1704	-106	4.3	AGGTGTGACACACCTCGCACTT
		-64	4	TATCGTGATGCGCATCACTTCC
Salmonella typhimurium LT2	STM1347	-106	4.3	AGGTGTGACACGCCTCGCACTT
		-64	4	TATCGTGATGCCCATCACTTCC
Citrobacter koseri ATCC BAA-895	CKO_01728	-115	4.3	AGGTGTGAAACGCCTCGCATTT
		-64	4.3	TATTGTGATGCCCATCACTTCC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02162	-63	4	TATCGTGATGCGCATCACTTCC
Enterobacter sp. 638	Ent638_1743	-126	3.6	AGTTATGATCGCTTTCACTCTC
		-62	3.6	TAAGGTGATGCCCATCACTTCC
Yersinia pestis KIM	y1928	-64	4.3	TATTGTGATCGCCATCACTTCC
Serratia proteamaculans 568	Spro_2172	-135	3.9	TTTTGTGCTTTTTTTAGCGATT
		-64	4.3	TATTGTGATCGCCATCACTTCC
Edwardsiella tarda EIB202	ETAE_1792	-63	4	TATCGTGATCCCCATCACTTCC
Proteus mirabilis HI4320	PMI1423	-55	3.9	TATTGTGATCTTAATCACTGGG
Photorhabdus luminescens subsp. laumondii TTO1	plu2630	-62	3.8	TATTGTAATTTCCATTATCTAT

Position: -188 Score: 3.5 Sequence: TTTTATGACGTTTTTGACAACT Locus tag: YintA_01000231
	YintA_01000231	-188	3.5	TTTTATGACGTTTTTGACAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hexR
Ortholog function: Phosphogluconate repressor HexR, RpiR family
Escherichia coli str. K-12 substr. MG1655	b1853	-151	3.9	AAATCTGACACTGATCATGTTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02368	-134	3.6	AAATACGACCCTGATCATGTAA
Yersinia pestis KIM	y2245	-152	3.7	AAATTAGACACAGGTCATATTA
Proteus mirabilis HI4320	PMI1156	-58	3.6	AACCGTTATAGATTTCTCCTTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2121	-132	3.7	TTTTATGAAAAACATTAAATTA

Position: -142 Score: 4.3 Sequence: AGTTGTGATCACAAGCGCAATA Locus tag: YintA_01000277
	YintA_01000277	-142	4.3	AGTTGTGATCACAAGCGCAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ychH
Ortholog function: membrane protein
Escherichia coli str. K-12 substr. MG1655	b1205	-105	4.5	AATTGTGATCACGCCCGCACAT
Salmonella typhimurium LT2	STM1782	-105	4.4	ATTTGTGATCGCACCCGCACTT
Citrobacter koseri ATCC BAA-895	CKO_01260	-104	4.1	AATTGTGATCGCCCACGCACTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02241	-100	4.1	TAATGTGATCGTGGACGCACTC
Enterobacter sp. 638	Ent638_2343	-119	3.7	TGTTGTGACGAGAGTCATTAAT
		-101	4	TAATGTGATCATTCACGCAACT
Erwinia amylovora ATCC 49946	EAM_1581	-97	3.9	AAATGTGATCGCTGACTCATCA
Yersinia pestis KIM	y2296	-145	3.9	AGTTGTGATCGCTACCGCAACA
Serratia proteamaculans 568	Spro_1985	-117	4.2	ATTTGTGATCGCCTACGCAATC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2185	-275	3.6	TAGCGTGATTATGAGAACGCTA
		-117	3.8	ATCTGTGATCCCTCCCGCAATC
Photorhabdus luminescens subsp. laumondii TTO1	plu2065	-189	4.1	AGTTGTGATCGTGTCCGCAATG

Position: -270 Score: 4.1 Sequence: CGTCGTGAGTTGAATCACAGTA Locus tag: YintA_01000335
	YintA_01000335	-270	4.1	CGTCGTGAGTTGAATCACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygbI
Ortholog function: Hypothetical transcriptional regulator ygbI
Escherichia coli str. K-12 substr. MG1655	b2735	-166	3.7	TTGTTTGATATTGTGAATATAA
		-127	5.2	TATGGTGATCTGATTCACATAA
Salmonella typhimurium LT2	STM2919	-128	4	TGCGGTGAGTTGTTTCACAAAA
		-87	3.6	TTTTGTGAAGGCAATCCTCATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01606	-271	3.6	TAATGTGATTTAATGATAGAAT
		-230	4.7	ATATGTGAGAGTTATCACGAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_pKPN4p07051	-233	3.6	TAATGTGATTTAATGATAGAAT
		-192	4.7	TTATGTGAGAGTTATCACGAAT
Erwinia amylovora ATCC 49946	EAM_1104	-238	4.5	ATTAGTGATAAACTTCACATCA
Serratia proteamaculans 568	Spro_1493	-211	3.9	ATCAGCGATCGTTGTCACAATT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4325	-267	4.8	TGTGGTGATTTTTATCACATAA
Edwardsiella tarda EIB202	ETAE_1921	-132	3.9	AACCGTGTTTATCCTCACAAAT

Position: -239 Score: 4.4 Sequence: TGCTGTGATGAACTTAACAAAA Locus tag: YintA_01000387
	YintA_01000387	-239	4.4	TGCTGTGATGAACTTAACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cycA2
Ortholog function: D-alanine/D-serine/glycine permease
Escherichia coli str. K-12 substr. MG1655	b4208	-198	4.7	TTTTGTGAGCTGTTTCGCGTTA
Salmonella typhimurium LT2	STM4398	-193	5.1	TTTTGTGAGCTAATTCGCATTA
		-170	3.9	CAAAGTGATATAACACTCATTT
Citrobacter koseri ATCC BAA-895	CKO_03624	-199	4.4	TTTTGTGAGCTAATTCGCGTTG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04601	-192	4.7	TTTTGTGAGCTATTTCGCGTTA
		-169	3.8	ATGAGTGATATAACACTCACTT
Enterobacter sp. 638	Ent638_0378	-201	4.2	TTTTGTGAGCTGTTTTGCATTG
Yersinia pestis KIM	y2447	-199	4.5	CACTGTGATGTACTTAACAAAA
		-118	3.7	TAATATTAAATTATTCGCAAAT
Proteus mirabilis HI4320	PMI1614	-102	4.4	TTCTGAGATTTGTGTCACAATA
Photorhabdus luminescens subsp. laumondii TTO1	plu1965	-102	4.6	TATAGTAATCTGTGTCACAATA

Position: -268 Score: 4.1 Sequence: TAATGTGATGTGGCGTGAATTT Locus tag: YintA_01000395
	YintA_01000395	-268	4.1	TAATGTGATGTGGCGTGAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: putP
Ortholog function: Proline/sodium symporter PutP (TC 2.A.21.2.1)
Escherichia coli str. K-12 substr. MG1655	b1015	-207	3.6	AAATGTGAGAGAGTGCAACCTG
Salmonella typhimurium LT2	STM1125	-204	3.6	AAATGTGAGAGAGTGCAACCTG
Citrobacter koseri ATCC BAA-895	CKO_02041	-80	3.6	AAATGTGAGAGAGTGCAACCTG
Enterobacter sp. 638	Ent638_1542	-249	3.7	TTTTATGCGGCACTTAACACTT
Serratia proteamaculans 568	Spro_2930	-211	3.9	AAATGTGACGCAGGGTAAACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4218	-130	3.7	TTGTGCAACCTTGTTAACAAAT
Proteus mirabilis HI4320	PMI1615	-220	3.8	TAGTGTGAAGTTACATACAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1958	-243	4.4	AAATGTGATTCAGTAAACGTTT

Position: -127 Score: 3.5 Sequence: ATAGGTAATATCAGTCAAAGTT Position: -97 Score: 3.6 Sequence: TATTCAGGTTTGCATCACATTA Locus tag: YintA_01000548
	YintA_01000548	-127	3.5	ATAGGTAATATCAGTCAAAGTT
		-97	3.6	TATTCAGGTTTGCATCACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dsdC
Ortholog function: DNA-binding transcriptional dual regulator
Escherichia coli str. K-12 substr. MG1655	b2364	-115	3.9	TGGAGTGATTTACATCTAAAAA
		-85	4.6	AATTGAGATATGGTTCACTTTA
Salmonella typhimurium LT2	STM3800	-142	3.8	TGATGTAAATTGAATCAACTAT
		-124	4.5	CTATGTGATTTCCATCTAATAT
		-94	4.2	TTTTGCGATATGGTTCATTTTA
Citrobacter koseri ATCC BAA-895	CKO_00019	-32	3.9	AAGGGTGATTTGCATCCAATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04079	-125	3.9	AAAGGTGATTTAGCTCTAAAAG
		-95	4.2	AAATATGCTATGGGTCAAATTA
Serratia proteamaculans 568	Spro_2451	-76	3.6	TTTAGCGACATGGGTCAACTTT
Proteus mirabilis HI4320	PMI0184	-199	3.6	TATTGTTAAACATATTGAATAT
		-117	4.4	ATAGGTGATCAGATGCACAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu1968	-124	4.4	TTCAGTGATACCGATCAAAATT
		-94	4.5	ATTTGCGATTTAAATCACTAAA

Position: -340 Score: 4.9 Sequence: CAATGTGATTCAGCTCATATTT Locus tag: YintA_01000583
	YintA_01000583	-340	4.9	CAATGTGATTCAGCTCATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fucP
Ortholog function: L-fucose permease
Escherichia coli str. K-12 substr. MG1655	b2801	-207	4.9	TAAAGTGATGGTAGTCACATAA
		-167	4.5	AAGTGTGACCGCCGTCATATTA
Citrobacter koseri ATCC BAA-895	CKO_04160	-219	5	TAAAGTGATGATAATCACATAA
		-179	4.8	AAATGTGACCACCATCATATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03152	-260	4.7	TAAAGTGACAATAATCACATAA
		-220	4.6	AAGTGTGACCATCATCATATTA

Position: -169 Score: 4.6 Sequence: AATTGTGACATATCGCTCATAT Locus tag: YintA_01000608
	YintA_01000608	-169	4.6	AATTGTGACATATCGCTCATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: malX
Ortholog function: PTS family enzyme IIC/enzyme IIB
Escherichia coli str. K-12 substr. MG1655	b1621	-154	4.1	TTATGTGACAGATAAAACGTTT
		-94	4.4	TAATGTGATTTATGCCTCACTA
Enterobacter sp. 638	Ent638_1827	-96	4.2	GAATGTGATTCAGAGCGCACTA

Position: -125 Score: 4.8 Sequence: TTATGTGCAGTAAATCACATAA Locus tag: YintA_01000619
	YintA_01000619	-125	4.8	TTATGTGCAGTAAATCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mlc
Ortholog function: ROK family transcriptional regulatory protein
Escherichia coli str. K-12 substr. MG1655	b1594	-108	4.1	AAATGTGCTGTTAATCACATGC
Salmonella typhimurium LT2	STM1488	-65	3.8	AGTATTGAAGTGTTTCACCATA
Citrobacter koseri ATCC BAA-895	CKO_01593	-107	3.6	AAaTGTGcagTAaATCACAcgg
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01574	-104	3.8	AAATGTGCGGTAAATCACAAGG
Enterobacter sp. 638	Ent638_1919	-107	3.8	AAATGTGCGGTAAATCACAAGG
Erwinia amylovora ATCC 49946	EAM_1710	-143	4.9	TTATGTGCTGTAAATCACATTC
Yersinia pestis KIM	y2110	-146	4.8	TTATGTGCAGCAAATCACATAA
Serratia proteamaculans 568	Spro_2283	-111	4.8	ATTTGTGCAGCAAATCACATAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2258	-226	4.4	ATATGCGCGCTAAATCACATAA
Edwardsiella tarda EIB202	ETAE_1713	-113	4.8	ATTTGTGCACTTAATCACATAA
Proteus mirabilis HI4320	PMI1292	-126	4.7	ATATGTGCTTTCCATCACGATT
Photorhabdus luminescens subsp. laumondii TTO1	plu2226	-119	4.8	TTTCGTGCTGAATATCACATAT

Position: -201 Score: 3.6 Sequence: AAATGTTATTCTAAATGCATAT Locus tag: YintA_01000744
	YintA_01000744	-201	3.6	AAATGTTATTCTAAATGCATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydhD
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b1654	-132	3.6	ATATTTGAAATGCAACAAATAG
Enterobacter sp. 638	Ent638_1793	-186	3.6	TGAAGCGCTTTTGCTCACACTA
Erwinia amylovora ATCC 49946	EAM_1665	-145	3.9	AAATGTTATTTTGTTATCATCT
Proteus mirabilis HI4320	PMI1394	-292	3.6	TAATGTGCATTTATACACTTAT

Position: -56 Score: 3.6 Sequence: TTGTGTAATACTTGTAACGCTA Locus tag: YintA_01000757
	YintA_01000757	-56	3.6	TTGTGTAATACTTGTAACGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lpp
Ortholog function: major outer membrane lipoprotein
Escherichia coli str. K-12 substr. MG1655	b1677	-56	3.6	TTGTGTAATACTTGTAACGCTA
Salmonella typhimurium LT2	STM1377	-56	3.6	TTGTGTAATACTTGTAACGCTA
Citrobacter koseri ATCC BAA-895	CKO_01710	-56	3.6	TTGTGTAATACTTGTAACGCTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02134	-56	3.6	TTGTGTAATACTTGTAACGCTA
Enterobacter sp. 638	Ent638_1767	-56	3.6	TTGTGTAATACTTGTAACGCTA
Erwinia amylovora ATCC 49946	EAM_1656	-56	3.6	TTGTGTAATACTTGTAACGCTA
Serratia proteamaculans 568	Spro_2186	-55	3.6	TTGTGTAATACTTGTAACGCTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1866	-56	3.6	TTGTGTAATACTTGTAACGCTA
Edwardsiella tarda EIB202	ETAE_1852	-55	3.6	TTGTGTAATACTTGTAACGCTA
Proteus mirabilis HI4320	PMI1409	-200	4.4	TTTTGTGAAATAACACGCATTT

Position: -175 Score: 3.8 Sequence: TAATTTGATATATATTCCAAAG Locus tag: YintA_01000826
	YintA_01000826	-175	3.8	TAATTTGATATATATTCCAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ushA
Ortholog function: UDP-sugar hydrolase (EC 3.6.1.45); 5'-nucleotidase (EC 3.1.3.5)
Escherichia coli str. K-12 substr. MG1655	b0480	-174	4	ATTTGTGATTATTACCAGACTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00461	-125	3.9	AATTATTATCCAACTAACATAC
		-94	3.7	AGGTTTGAAGGAAGTCGCAATT
Enterobacter sp. 638	Ent638_0959	-95	3.9	AGATTTGAGGAAAGTCGCAATT
Serratia proteamaculans 568	Spro_1147	-103	4.6	TAATTTGACGCACATCGCAAAA
Edwardsiella tarda EIB202	ETAE_1034	-139	4.4	TTAGGTGAGTCACGTCACAATA
Proteus mirabilis HI4320	PMI2177	-111	3.7	ATATATAACCTACGTCATAAAA

Position: -167 Score: 4 Sequence: TACCGTGACATAACTCGCATTG Position: -114 Score: 3.7 Sequence: CTTTGGAATATATATCAAATTA Locus tag: YintA_01000827
	YintA_01000827	-167	4	TACCGTGACATAACTCGCATTG
		-114	3.7	CTTTGGAATATATATCAAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fsr
Ortholog function: fosmidomycin resistance protein
Escherichia coli str. K-12 substr. MG1655	b0479	-65	3.7	TAGTCTGGTAATAATCACAAAT
Salmonella typhimurium LT2	STM0493	-100	3.8	AATTGAGACTTCCTTCAAACAC
Citrobacter koseri ATCC BAA-895	CKO_02670	-102	3.8	AATTGAGACTTCCTTCAAACAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00460	-197	3.8	AATTGCGACTTCCTTCAAACCT
Enterobacter sp. 638	Ent638_0958	-92	4	AATTGCGACTTTCCTCAAATCT
Serratia proteamaculans 568	Spro_1146	-100	4.7	TTTTGCGATGTGCGTCAAATTA

Position: -164 Score: 4.5 Sequence: ATCTGTGACCCCCTTAACATAA Locus tag: YintA_01000885
	YintA_01000885	-164	4.5	ATCTGTGACCCCCTTAACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoA
Ortholog function: cytochrome o ubiquinol oxidase subunit II
Yersinia pestis KIM	y1021	-137	4.5	ATCTGTGACCCCCTTAACATAA
Serratia proteamaculans 568	Spro_1090	-135	4.2	ATCTGTGACCCCCTTAACAGAA
Proteus mirabilis HI4320	PMI0108	-194	3.6	AAATTATAGTTAATTCACAATA
		-147	3.6	TTAATTACTTGTGATCACATTA
		-141	4.3	ACTTGTGATCACATTAACACAA

Position: -193 Score: 3.4 Sequence: ATTTGTCATATACCGTAAATAA Position: -75 Score: 3.7 Sequence: AAGTATGACGGGTATAACAACA Locus tag: YintA_01000985
	YintA_01000985	-193	3.4	ATTTGTCATATACCGTAAATAA
		-75	3.7	AAGTATGACGGGTATAACAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroA
Ortholog function: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Escherichia coli str. K-12 substr. MG1655	b0908	-155	4.8	TTGTGTGATGCAAGCCACATTT
Salmonella typhimurium LT2	STM0978	-142	4.2	TTGTGTGACGCATGCCGCATTT
Citrobacter koseri ATCC BAA-895	CKO_02164	-171	4.6	TTGTGTGACGTAGCGCGCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00936	-145	3.7	TTGTGTGACGGCGGCCGCGTTT
Enterobacter sp. 638	Ent638_1428	-119	4.4	TTGTGTGACGGTGGACACATTT
Yersinia pestis KIM	y2783	-39	3.3	TATAACGATGGCAATCTCAGTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2593	-78	3.5	AAGTATGACGGGTATAAAAATG
Edwardsiella tarda EIB202	ETAE_2177	-104	3.8	TATAGTGACAGCGCTCAATAAA

Position: -242 Score: 3.2 Sequence: ATGAGTTATCTATCGTGCATTA Position: -201 Score: 3.6 Sequence: TTTGGTGAATAATTCCAAATTA Locus tag: YintA_01000986
	YintA_01000986	-242	3.2	ATGAGTTATCTATCGTGCATTA
		-201	3.6	TTTGGTGAATAATTCCAAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: serC
Ortholog function: Phosphoserine aminotransferase (EC 2.6.1.52)
Escherichia coli str. K-12 substr. MG1655	b0907	-155	4.8	TTGTGTGATGCAAGCCACATTT
Salmonella typhimurium LT2	STM0977	-142	4.2	TTGTGTGACGCATGCCGCATTT
Citrobacter koseri ATCC BAA-895	CKO_02165	-171	4.6	TTGTGTGACGTAGCGCGCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00935	-145	3.7	TTGTGTGACGGCGGCCGCGTTT
Enterobacter sp. 638	Ent638_1427	-119	4.4	TTGTGTGACGGTGGACACATTT
Yersinia pestis KIM	y2784	-39	3.3	TATAACGATGGCAATCTCAGTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2594	-78	3.5	AAGTATGACGGGTATAAAAATG
Proteus mirabilis HI4320	PMI0711	-119	3.5	TATTTTTGTGTGCTACACATAA

Position: -4 Score: 3.9 Sequence: TAATGTGAAATCTATAAAGCTA Locus tag: YintA_01000987
	YintA_01000987	-4	3.9	TAATGTGAAATCTATAAAGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ansB
Ortholog function: periplasmic L-asparaginase II
Escherichia coli str. K-12 substr. MG1655	b2957	-125	4	TTTTGTTACCTGCCTCTAACTT
Salmonella typhimurium LT2	STM3106	-125	4.3	TTTTGTTATCCATCTCTAAAAA
Citrobacter koseri ATCC BAA-895	CKO_04332	-125	3.6	TTTTGATATCCATCTCTAAAAA
Proteus mirabilis HI4320	PMI0708	-81	3.6	ATTCGTTCTATTTATCACGGAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1616	-76	3.8	AAGTCTGGTATGTATCACAGAT

Position: -83 Score: 4 Sequence: CAATATGATCCATATCAATTTT Locus tag: YintA_01000989
	YintA_01000989	-83	4	CAATATGATCCATATCAATTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: focA
Ortholog function: formate transporter
Escherichia coli str. K-12 substr. MG1655	b0904	-156	3.6	TATTTTTATTTGGATAATCAAA
		-78	3.8	AGATATGATCTATATCAATTTC
Salmonella typhimurium LT2	STM0974	-78	4.4	AGATATGATCTATATCAAATTC
Citrobacter koseri ATCC BAA-895	CKO_02167	-198	3.6	TATTTTTATTTGGATAATCAAA
		-120	4.4	AGATATGATCTATATCAAATTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00932	-121	3.8	AGATATGATCTATATCAATTTC
Enterobacter sp. 638	Ent638_1424	-78	3.8	AGATATGATCTATATCAATTTC
Yersinia pestis KIM	y2789	-84	4	CAATATGATCCATATCAATTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2596	-79	4.5	CAATATGATCCACATCAAATTT
Proteus mirabilis HI4320	PMI0706	-188	4	TTTTTTGATAAAATTTAAAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1614	-88	4.7	AATTATGATCTATATCAAATTC

Position: -196 Score: 4.2 Sequence: AAGTTTGATGTAGCTAACGCTA Locus tag: YintA_01001004
	YintA_01001004	-196	4.2	AAGTTTGATGTAGCTAACGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: clpS
Ortholog function: ATP-dependent Clp protease adaptor protein
Escherichia coli str. K-12 substr. MG1655	b0881	-164	4	AAATTTGAAGCAGTTAACGCTA
Salmonella typhimurium LT2	STM0944	-164	4	AAATTTGAAGCAGTTAACGCTA
		-104	3.6	AGATGTTAGTTATCTATCAATT
Citrobacter koseri ATCC BAA-895	CKO_02199	-164	4	AAATTTGAAGCAGTTAACGCTA
		-135	4.2	TAATGTGACAGATGTCGCGGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00914	-167	4	AAATTTGAAGCAGTTAACGCTA
		-77	4.3	ATTTGTGATGAGCATAACCTCT
Enterobacter sp. 638	Ent638_1398	-161	3.9	ATTTTTGAAGCAGTTAACGCTA
		-132	3.8	GAATGTGACAGATATCGCGGAT
Erwinia amylovora ATCC 49946	EAM_1320	-161	4	AAATTTGAAGCAGTTAACGCTA
		-132	4.5	TTTTGTGATAGAGGTCGCTATT
Serratia proteamaculans 568	Spro_1673	-176	3.6	AAGTTTGAAGCAGGTAACGCTA
Edwardsiella tarda EIB202	ETAE_2208	-164	3.8	AAGTTTGAGGCAGTTAACGCAA
		-144	3.6	AATTGTGCGGCAGTGCGCTTTT
Proteus mirabilis HI4320	PMI0689	-268	3.7	TGTCTTTATTTACTTAACATTA
		-148	4.1	AACTTTGATGTAGCTAACGCTT
Photorhabdus luminescens subsp. laumondii TTO1	plu1593	-170	4.3	AAGTTTGATATAGATAACGATA

Position: -185 Score: 4 Sequence: TAGCGTTAGCTACATCAAACTT Locus tag: YintA_01001005
	YintA_01001005	-185	4	TAGCGTTAGCTACATCAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cspD
Ortholog function: cold shock-like protein
Escherichia coli str. K-12 substr. MG1655	b0880	-180	4	TAGCGTTAACTGCTTCAAATTT
Salmonella typhimurium LT2	STM0943	-181	4	TAGCGTTAACTGCTTCAAATTT
Citrobacter koseri ATCC BAA-895	CKO_02200	-210	3.9	ATCCGCGACATCTGTCACATTA
		-181	4	TAGCGTTAACTGCTTCAAATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00913	-270	4.2	AGAGGTTATGCTCATCACAAAT
		-180	4	TAGCGTTAACTGCTTCAAATTT
Enterobacter sp. 638	Ent638_1397	-209	3.8	ATCCGCGATATCTGTCACATTC
		-180	3.9	TAGCGTTAACTGCTTCAAAAAT
Serratia proteamaculans 568	Spro_1672	-205	4	TAGCGTTACCTGCTTCAAACTT
		-49	3.9	TTCAGTTATTCATCTCACCTAA
Proteus mirabilis HI4320	PMI0688	-163	3.8	AAGCGTTAGCTACATCAAAGTT
Photorhabdus luminescens subsp. laumondii TTO1	plu1592	-194	4.6	TATCGTTATCTATATCAAACTT

Position: -262 Score: 4.6 Sequence: TTAAGTGATAAAGATCACACTC Locus tag: YintA_01001055
	YintA_01001055	-262	4.6	TTAAGTGATAAAGATCACACTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadL
Ortholog function: Long-chain fatty acid transport protein
Escherichia coli str. K-12 substr. MG1655	b2344	-269	4.8	ATAAGTGACCGAAATCACACTT
		-247	3.9	AAAAATGATCTAAAACAAAATT
Salmonella typhimurium LT2	STM2391	-262	4.8	TTAAGTGACCGAAATCACACTT
		-240	3.9	AAAAATGATCTAAAACAAAAAT
Citrobacter koseri ATCC BAA-895	CKO_00446	-263	4.8	ATAAGTGACCGAAATCACACTT
		-241	3.9	AAAAATGATCTAAAACAAAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02726	-264	4.7	TTAAGTGACAGAAATCACACTT
		-242	3.9	AAAAATGATCTAAAACAAAAAT
Enterobacter sp. 638	Ent638_2884	-269	4.2	GTAAGTGACCGATATCACACTA
		-247	4	AAAAATGATCTAGCGCAAAAAT
		-214	3.7	ATGAGTGCGACGGCTCGCATTT
Erwinia amylovora ATCC 49946	EAM_2348	-194	3.9	TTTTGTTAAGCAGATCTCTTTT
Serratia proteamaculans 568	Spro_3381	-271	5.1	TTAAGTGATGGAAATCACAAAT
		-196	3.8	TTTTGTTAGCCAGATCTCTCTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3081	-332	3.8	AATTTTTATCTTCCTTATATTT
		-262	4.9	TTTAGTGATATCAGTCACATTA
Proteus mirabilis HI4320	PMI1810	-326	3.7	AAGTGTTAATTATCTATCATAA
		-186	4.2	TAATGTTAACTAAATCCCAAAT

Position: -256 Score: 3.9 Sequence: AATGCCGATCTTTATCACATAA Locus tag: YintA_01001078
	YintA_01001078	-256	3.9	AATGCCGATCTTTATCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ascF
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b2715	-177	4.2	TCAGGTGACCGGTTTCACAAAT
Citrobacter koseri ATCC BAA-895	CKO_04070	-179	4.4	ACAAGTGATCATTCTCACAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03051	-168	4.1	CTTAGCGATCAAAATCACAAAA
Enterobacter sp. 638	Ent638_3188	-128	4.4	CAAAGTGATCGTTATCACGAAT
		-54	3.7	TTTTGTGAAACCGGTTTCCTAT
Serratia proteamaculans 568	Spro_0576	-189	4.4	AAAAGTGACCACCATCACGAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2165	-255	3.9	CATGGCGATCGTGGTCACATAA
		-212	3.9	TATTGAAATCGCACTCATATAT

Position: -7 Score: 4.3 Sequence: AAATGCGATGGGCGTCACTATT Locus tag: YintA_01001085
	YintA_01001085	-7	4.3	AAATGCGATGGGCGTCACTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhaM
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b4470	-228	4.6	TTTTGTGATCTGCCGCAAATAG
Salmonella typhimurium LT2	STM3238	-230	4.5	TGTTGTGATACGCGTCAAATAG
Citrobacter koseri ATCC BAA-895	CKO_04510	-180	4.7	TGTTGTGATCTGCTTCAAGAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04419	-230	3.6	CGCTGTGAGCAGATTAACAAAA

Position: -328 Score: 4.4 Sequence: TTTTGTGATGTTAATTTAATTT Position: -164 Score: 3.9 Sequence: AGAGGAGATCTACATCACGATT Locus tag: YintA_01001103
	YintA_01001103	-328	4.4	TTTTGTGATGTTAATTTAATTT
		-164	3.9	AGAGGAGATCTACATCACGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: arbG
Ortholog function: transcriptional antiterminator, BglG
Escherichia coli str. K-12 substr. MG1655	b3723	-202	3.7	AACTGCGAGCATGGTCATATTT
		-185	3.6	TATTTTTATCAATAGCGCATTG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02579	-154	4.2	AGTCGCGATCTTAATCACGTTT
Enterobacter sp. 638	Ent638_2741	-153	3.9	GATCACGATCTAAATCACATTT

Position: -120 Score: 5.1 Sequence: TTATGTGATCTTTGTCACAAAG Locus tag: YintA_01001118
	YintA_01001118	-120	5.1	TTATGTGATCTTTGTCACAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: glk
Ortholog function: glucokinase
Escherichia coli str. K-12 substr. MG1655	b2388	-116	4.1	TTGTGTGACCCAGATCGATATT
Salmonella typhimurium LT2	STM2403	-116	3.9	TTCTGTGATGAAGATCTATATT
Citrobacter koseri ATCC BAA-895	CKO_00412	-116	4.5	TTATGTGATGCAGATCGATATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02738	-117	4.4	AAATGTGACCTGTGTCGCTAAA
Enterobacter sp. 638	Ent638_2921	-116	3.8	TTCTGTGACGAAGATCGATTAT
Yersinia pestis KIM	y1505	-113	4.7	TTATGAGATGTCAGTCACAAAA
Serratia proteamaculans 568	Spro_3407	-116	4.8	TTTTGTGATCCGGATCGCTAAT

Position: -136 Score: 4.4 Sequence: TTTTGTGATCAACCCCACTAAT Locus tag: YintA_01001124
	YintA_01001124	-136	4.4	TTTTGTGATCAACCCCACTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nupC
Ortholog function: Nucleoside permease NupC
Salmonella typhimurium LT2	STM2409	-133	3.7	AAGTGTATTACAGATCACTAAT
		-84	3.8	TAGTGTGTGTTGGATCTCGTTT
Citrobacter koseri ATCC BAA-895	CKO_00402	-133	3.7	AAACGTATTCCAGATCACTAAT
		-114	4	AATTTTGAATCTCATCACAGCT
		-84	3.7	TAGTGTGTGTTTGATCTCGTTT
Enterobacter sp. 638	Ent638_2927	-189	4.7	TTTTGTGAAGCGTAGCACACAA
		-133	3.6	AAATGTATGGTTGATCACTATT
		-84	4.1	TAGTGTGGTCTTGATCTCGTTT

Position: -323 Score: 3.6 Sequence: TTTAGTGATTTTCTCAAAAGTT Position: -268 Score: 3.5 Sequence: ATTTGAGATGAAATACATCTAT Locus tag: YintA_01001179
	YintA_01001179	-323	3.6	TTTAGTGATTTTCTCAAAAGTT
		-268	3.5	ATTTGAGATGAAATACATCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: flhD
Ortholog function: DNA-binding transcriptional dual regulator with FlhC
Proteus mirabilis HI4320	PMI1672	-158	3.6	TGAAATGATCGTAATCAAGTAA

Position: -293 Score: 3.5 Sequence: TGTCTTGAGGTTAATCCCACAA Position: -196 Score: 3.4 Sequence: AATTGATACCTGGCTGACACTT Position: -79 Score: 4.7 Sequence: TTTAGTGATCTTGTTCACGGTT Locus tag: YintA_01001192
	YintA_01001192	-293	3.5	TGTCTTGAGGTTAATCCCACAA
		-196	3.4	AATTGATACCTGGCTGACACTT
		-79	4.7	TTTAGTGATCTTGTTCACGGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glgS
Ortholog function: glycogen synthesis protein GlgS
Escherichia coli str. K-12 substr. MG1655	b3049	-225	3.4	AATAGTTTCCTTGCTTACATTT
		-203	3.4	ATCTGTGTTAATAATAACACAG
		-124	3.8	AAGTGTGATCGGGGACAATATA
Salmonella typhimurium LT2	STM3197	-222	3.3	TCGCGTGATAATTTTCATGCTT
		-178	4.2	TCATGTGACCCATATCTCCTTA
		-117	4.2	TATTGTGATTTTGCGCATTAAA
Citrobacter koseri ATCC BAA-895	CKO_04437	-118	3.4	AAGTGTGATGTCAGGCAACTGA

Position: -191 Score: 4.9 Sequence: TTTTGTGATAAATGTCACCAAA Locus tag: YintA_01001231
	YintA_01001231	-191	4.9	TTTTGTGATAAATGTCACCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagB
Ortholog function: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Escherichia coli str. K-12 substr. MG1655	b0678	-212	4.3	AAATTTAATTCGTATCGCAAAT
		-178	4.6	TTTTGTGAGTTTTGTCACCAAA
Salmonella typhimurium LT2	STM0684	-205	3.7	AAAATTAATTCGCCTCGCAAAT
		-171	4.7	TTTTGTGATTATAATCACTAAA
Citrobacter koseri ATCC BAA-895	CKO_02486	-218	3.8	AAAATTAATTCGTATCGCAAAT
		-184	5.2	TTTTGTGATTTGAATCACCAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00699	-217	3.8	AAAATTAATTCGTATCGCAAAT
		-183	5	TTTTGTGATAATTATCACCAAA
Enterobacter sp. 638	Ent638_1193	-218	3.8	AAAATTAATTCGTATCGCAAAT
		-184	4.6	TTTTGTGAGTTTTGTCACCAAA
Erwinia amylovora ATCC 49946	EAM_1147	-195	4.9	ATATGTGATTAAAGTCACCTTA
Yersinia pestis KIM	y1202	-214	5.1	TTTTGTGATAAATATCACCAAA
Serratia proteamaculans 568	Spro_1227	-194	5.3	TTTTGTGATTTACATCACCAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1326	-180	5	TTATGTGATAAAAATCACCAAA
Edwardsiella tarda EIB202	ETAE_2617	-190	5	ATTTGTGATAACTATCACCAAT
Proteus mirabilis HI4320	PMI0454	-217	4.9	ATTTGTGATTAAAGTCACCTAT

Position: -211 Score: 4.7 Sequence: TTTGGTGACATTTATCACAAAA Locus tag: YintA_01001232
	YintA_01001232	-211	4.7	TTTGGTGACATTTATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagE
Ortholog function: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
Enterobacter sp. 638	Ent638_1194	-162	4.4	TTTGGTGACAAAACTCACAAAA
		-128	3.6	ATTTGCGATACGAATTAATTTT
Yersinia pestis KIM	y1203	-206	4.9	TTTGGTGATATTTATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1327	-202	5	TTTGGTGATTTTTATCACATAA
Edwardsiella tarda EIB202	ETAE_2616	-157	4.8	ATTGGTGATAGTTATCACAAAT
Proteus mirabilis HI4320	PMI0455	-150	4.6	ATAGGTGACTTTAATCACAAAT

Position: -116 Score: 3.7 Sequence: TAATTCTAGCCGGATCACAGTT Locus tag: YintA_01001234
	YintA_01001234	-116	3.7	TAATTCTAGCCGGATCACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: iciA
Ortholog function: chromosome replication initiation inhibitor protein
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03350	-107	3.8	CCCTGCGATGCAGATCACACAA
Enterobacter sp. 638	Ent638_3334	-126	3.9	CCCTGTGACCGGTGTCACATTA
		-48	3.7	ATTTGTGTCATAGTGCAGAATA
Yersinia pestis KIM	y3303	-249	3.7	TAATTCTAGCGAGATCACAGTT
Edwardsiella tarda EIB202	ETAE_2951	-48	3.8	TAACGTTTTATACATAACAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu3610	-41	3.6	CATAGTGATATTCAGAAAAATA

Position: -116 Score: 4.2 Sequence: AACTGTGATCCGGCTAGAATTA Locus tag: YintA_01001235
	YintA_01001235	-116	4.2	AACTGTGATCCGGCTAGAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpiA
Ortholog function: Ribose 5-phosphate isomerase A (EC 5.3.1.6)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03349	-82	3.9	TTGTGTGATCTGCATCGCAGGG
Enterobacter sp. 638	Ent638_3333	-47	3.8	TAATGTGACACCGGTCACAGGG
Yersinia pestis KIM	y3302	-114	4.2	AACTGTGATCTCGCTAGAATTA
Edwardsiella tarda EIB202	ETAE_2950	-276	4	TTTTGTTATGTATAAAACGTTA
Proteus mirabilis HI4320	PMI2032	-96	3.8	TAAAATGTTGTGTCTCAAATTT

Position: -228 Score: 5.2 Sequence: TTTGGTGATATATATCACATTT Locus tag: YintA_01001236
	YintA_01001236	-228	5.2	TTTGGTGATATATATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: serA
Ortholog function: D-3-phosphoglycerate dehydrogenase
Escherichia coli str. K-12 substr. MG1655	b2913	-210	4.1	TTTGGTGACATGTGTCACGCTT
Salmonella typhimurium LT2	STM3062	-217	4.5	TTTGGTGACATGTATCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03348	-214	4.6	TTTGGTGACTTCTGTCACATTT
Enterobacter sp. 638	Ent638_3332	-215	4.1	TTCGGTGACTTGTATCACGTTT
Yersinia pestis KIM	y3301	-126	4.8	TTTGGTGATATATATCACATTC
Serratia proteamaculans 568	Spro_3923	-215	4.4	TTTGGTGACATATGTCACATTG
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3905	-214	3.9	TTTGGTACTTAATATCACATTT
Proteus mirabilis HI4320	PMI2031	-210	4	TTCAGTGATATATATCACACGA
Photorhabdus luminescens subsp. laumondii TTO1	plu3605	-207	4.4	TTTAGTGATATATTTCATATCT
		-178	4.2	TTATTTGATCTAAATCCTAATT
		-105	4.4	TTATGTGATGGGAATAGCAATC

Position: -279 Score: 5.3 Sequence: TAATGTGACTCCGTTCACATTA Position: -21 Score: 4.8 Sequence: TAATTTGAGAGAGATCACAAAA Locus tag: YintA_01001272
	YintA_01001272	-279	5.3	TAATGTGACTCCGTTCACATTA
		-21	4.8	TAATTTGAGAGAGATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: CKO_02295
Ortholog function: hypothetical protein
Citrobacter koseri ATCC BAA-895	CKO_02295	-218	3.9	TTTTGTTATCTCATTGAAAATT
		-104	4.1	TTTTGTGCAAGTTTTCTCATTA
Citrobacter koseri ATCC BAA-895	CKO_02295	-218	3.9	TTTTGTTATCTCATTGAAAATT
		-104	4.1	TTTTGTGCAAGTTTTCTCATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00854	-103	3.9	TGAAATGAGCGAGATCGCATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00854	-103	3.9	TGAAATGAGCGAGATCGCATAT
Enterobacter sp. 638	Ent638_1314	-122	4.1	TTTTGTGCAAGCTTTCTCATAA
Enterobacter sp. 638	Ent638_1314	-122	4.1	TTTTGTGCAAGCTTTCTCATAA
Yersinia pestis KIM	y3231	-299	5.4	TAATGTGACTTTGTTCACATTA
		-122	3.8	TTCTTTGAAAGAATTCTCATAA
		-21	4.9	TAATTTGAGGGAGATCACAAAA
Yersinia pestis KIM	y3231	-299	5.4	TAATGTGACTTTGTTCACATTA
		-122	3.8	TTCTTTGAAAGAATTCTCATAA
		-21	4.9	TAATTTGAGGGAGATCACAAAA
Serratia proteamaculans 568	Spro_3600	-130	3.7	AAACGTGGTTTTTTGCAAAAAT
		-21	4.6	AAATTTGAAGGAGATCACAGAA
Serratia proteamaculans 568	Spro_3600	-130	3.7	AAACGTGGTTTTTTGCAAAAAT
		-21	4.6	AAATTTGAAGGAGATCACAGAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1966	-21	4.8	AAAAGTGAACGGGATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1966	-21	4.8	AAAAGTGAACGGGATCACAAAA

Position: -97 Score: 4.3 Sequence: TAATGCGCGCCGAATCACATTT Locus tag: YintA_01001323
	YintA_01001323	-97	4.3	TAATGCGCGCCGAATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybiT
Ortholog function: ABC transporter ATP-binding protein
Escherichia coli str. K-12 substr. MG1655	b0820	-124	4.4	AGATGTGTACGAAATCACATTT
Salmonella typhimurium LT2	STM0838	-124	4	AGATGTGTACGAAATCACGTTT
Citrobacter koseri ATCC BAA-895	CKO_02298	-148	4.4	AGATGTGTACGAAATCACATTT
Enterobacter sp. 638	Ent638_1311	-125	4.4	AGATGTGTACGAAATCACATTT
Yersinia pestis KIM	y2677	-295	3.9	TATCGTTATACCCGTCATACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3010	-41	4	TAATGCGCGCCAAATCACATTC
Edwardsiella tarda EIB202	ETAE_2518	-40	4.8	TAATGTGAACAAAATCACGTTA

Position: -100 Score: 4.1 Sequence: CATCATGATGTAAATAACAATT Position: -16 Score: 4.2 Sequence: GAACGTGATCTACATCATGTTT Locus tag: YintA_01001334
	YintA_01001334	-100	4.1	CATCATGATGTAAATAACAATT
		-16	4.2	GAACGTGATCTACATCATGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: folE
Ortholog function: GTP cyclohydrolase I
Escherichia coli str. K-12 substr. MG1655	b2153	-101	3.8	TTATGTGCGCCGCCTCACGCAC
Salmonella typhimurium LT2	STM2193	-101	4	TTATGTGCGCTACCTCACGCAC
Citrobacter koseri ATCC BAA-895	CKO_00638	-98	3.8	TTATGTGCGCCGCCTCACGCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02591	-84	3.5	TTCTGTGCGCCACCTCACGCAC
Enterobacter sp. 638	Ent638_2753	-84	3.9	TTATGTGCGCCACCTCACGCAC
Serratia proteamaculans 568	Spro_1560	-121	4.3	AATCTTGACCGGGTTCACGTTA
Proteus mirabilis HI4320	PMI0639	-86	4.9	TAATGTGATTCAGCTCATCTAA

Position: -110 Score: 3.5 Sequence: TCTTGTGACGCATTTCACGTGG Locus tag: YintA_01001336
	YintA_01001336	-110	3.5	TCTTGTGACGCATTTCACGTGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: galS
Ortholog function: Mgl repressor and galactose ultrainduction factor GalS, HTH-type transcriptional regulator
Escherichia coli str. K-12 substr. MG1655	b2151	-146	3.5	GATAACGATCTGGATCACATTC
		-95	3.9	TGCTGTGACTCGATTCACGAAG
Salmonella typhimurium LT2	STM2191	-154	3.5	GATAACGATCTGGATCACATTC
		-103	3.5	CCCTGTGATGTTTCTCACGCAG
		-38	3.3	ATTTGTGAGCATTTTTGAACTC
Citrobacter koseri ATCC BAA-895	CKO_00640	-157	3.5	GATAACGATCTGGATCACATTC
		-106	3.4	CCCTGTGACCTTACTCACGTAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02589	-160	3.3	GATAACGATCTCGATCACAATC
		-109	3.4	CCGTGTGACCTCACTCACGCAG
		-33	3.6	TGACGTGCTGTAATTCTCTTAA
Enterobacter sp. 638	Ent638_2751	-160	3.4	GATAACGATCTGGATCACAATC
		-109	4.1	CTGTGTGAGCTTCTTCACGTAG
Erwinia amylovora ATCC 49946	EAM_2208	-110	3.4	GGCTGTGAGGTTTCTCACGTAG
Serratia proteamaculans 568	Spro_1562	-135	3.4	AATTGAGATCTGGCGCAGGTAG
		-84	3.5	TCCTGTGACGGGATTCACGCAG

Position: -323 Score: 4.4 Sequence: ATCTGTGAGAAAATTCACAGAT Locus tag: YintA_01001337
	YintA_01001337	-323	4.4	ATCTGTGAGAAAATTCACAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mglB
Ortholog function: Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3)
Escherichia coli str. K-12 substr. MG1655	b2150	-270	4.5	ATCTGTGAGTGATTTCACAGTA
Citrobacter koseri ATCC BAA-895	CKO_00641	-270	4.7	ATATGTGAGTAAATTCACAGTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02588	-239	4.8	ATTTGTGAGTAAATTCACAGTA
Enterobacter sp. 638	Ent638_2750	-271	4.4	ATCTGTGAGTAAATTCACAGTA
Yersinia pestis KIM	y2662	-212	4.4	ATCTGTGAGAAAATTCACAGTT
Serratia proteamaculans 568	Spro_1563	-229	4.4	ATCTGTGAGAAAATTCACAGAT

Position: -125 Score: 4.5 Sequence: ATTTGAGATACATCTCTCATTT Position: -75 Score: 4.4 Sequence: TAACGAGATCTAAATCACATCA Locus tag: YintA_01001361
	YintA_01001361	-125	4.5	ATTTGAGATACATCTCTCATTT
		-75	4.4	TAACGAGATCTAAATCACATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cdd
Ortholog function: cytidine deaminase
Escherichia coli str. K-12 substr. MG1655	b2143	-128	4.3	ATTTGCGATGCGTCGCGCATTT
		-78	5.1	TAATGAGATTCAGATCACATAT
Salmonella typhimurium LT2	STM2183	-128	4.2	ATTTGCGATACGTCGCGCATTT
		-78	4.8	CAATGAGATTTAGATCACATAT
Citrobacter koseri ATCC BAA-895	CKO_00646	-128	4.3	ATTTGCGATGCGTCGCGCATTT
		-78	4.8	CAATGAGATTTGGATCACATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02584	-78	4.4	GAATGAGATATTCATCACATAT
Enterobacter sp. 638	Ent638_2746	-127	4.2	ATTTGCGATGCGTCGCGCAATT
		-77	4.9	TAATGAGAACTGGATCACATAT
Erwinia amylovora ATCC 49946	EAM_2202	-124	3.9	ACTTGCGATAAGTCTCTCATTT
		-104	4.1	TTTGGTGATGCATTTCATTTAT
		-74	4.7	TAGAGCGATTTAGATCACATAT
Yersinia pestis KIM	y2657	-75	5	TAATGAGATATAAATCACAATT
Serratia proteamaculans 568	Spro_1568	-127	4.1	ACTTGCGATACATCTCGCAATT
		-77	4.5	TAAAGAGATTTACATCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2830	-130	4.6	AATTGAGATACATCTCGCATTT
		-79	4.5	TAAAGAGATTCCGATCACAATT
Edwardsiella tarda EIB202	ETAE_1162	-76	4.9	AAAAGTGATTATTATCACAAAT
Proteus mirabilis HI4320	PMI0643	-132	4.4	ATTTGAGATGTATCTCCCAATT
		-82	5.1	AAATATGATTTTAATCACATAT
Photorhabdus luminescens subsp. laumondii TTO1	plu1547	-75	4.7	CTATATGATATTTATCACATTA

Position: -71 Score: 4.6 Sequence: TAGTGTGACAGCTAGCACATAA Locus tag: YintA_01001363
	YintA_01001363	-71	4.6	TAGTGTGACAGCTAGCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yohJ
Ortholog function: LrgA family protein
Escherichia coli str. K-12 substr. MG1655	b2141	-68	4.9	TAATGTGATCGGTAGCACGTTT
Salmonella typhimurium LT2	STM2181	-68	4.6	TGATGTGATCGGTAGCACGTTT
Citrobacter koseri ATCC BAA-895	CKO_00648	-68	4.6	TGATGTGATCGGTAGCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02582	-68	5	TGATGTGATCGGTAGCACATTT
Enterobacter sp. 638	Ent638_2744	-68	4.7	TGATGTGATCCGTAGCACGTTT
Yersinia pestis KIM	y2654	-32	4.7	TAGTGTGATGGGTAGCACAGAA
Serratia proteamaculans 568	Spro_1570	-62	4.3	ATTTGTGGCGGAGGTCACAGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2828	-69	4.5	ATTCGTGATCTGTGGCACGTAA
Edwardsiella tarda EIB202	ETAE_1164	-68	4.9	TGATGTGATCAGTAGCACATTT
Proteus mirabilis HI4320	PMI0645	-71	5.2	TATTGTGATCCATAGCACACTT

Position: -128 Score: 3.8 Sequence: AGTTGTGCTATCTATCGCACCA Locus tag: YintA_01001378
	YintA_01001378	-128	3.8	AGTTGTGCTATCTATCGCACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gnd
Ortholog function: hypothetical protein
Enterobacter sp. 638	Ent638_2642	-116	4	CAGTGTGACATAGATCAGCAAA
Yersinia pestis KIM	y2629	-78	3.8	AGTTGTGCTATCTATCGCACCA
		-76	3.6	TTGTGCTATCTATCGCACCAAT
Serratia proteamaculans 568	Spro_1608	-297	3.7	ATGCTTGAAGTGGCTCTCACTT
		-72	4.2	ACATGTGTGCCACATCACAAAA
Proteus mirabilis HI4320	PMI0655	-71	4.7	CTATGTGATCAGGTTAACAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu1560	-74	4.4	ACATGTGATCACATTAACAAAT

Position: -188 Score: 4.1 Sequence: AATTGTGATCTTCAACGCAAGT Locus tag: YintA_01001419
	YintA_01001419	-188	4.1	AATTGTGATCTTCAACGCAAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: treB
Ortholog function: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655	b4240	-101	3.8	AATTGTGATCTTCGCTGCGTTT
Citrobacter koseri ATCC BAA-895	CKO_03571	-156	3.8	ATTTGTGATCTTCGCTGCGTTT
Enterobacter sp. 638	Ent638_0439	-106	4	TATTGTGATCTTCACCCGATTT
Serratia proteamaculans 568	Spro_0529	-124	3.8	TTTTGTGATCCTCGCCCCAAAC
Photorhabdus luminescens subsp. laumondii TTO1	plu3288	-127	4.3	CAATGTGATCTTCAACCCATTT

Position: -157 Score: 3.7 Sequence: AGTTGTTACATACCTTAAATAA Locus tag: YintA_01001433
	YintA_01001433	-157	3.7	AGTTGTTACATACCTTAAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: CKO_03591
Ortholog function: hypothetical protein
Salmonella typhimurium LT2	STM4440	-229	4.5	AACTGTAATACCCATCACACTT
		-162	3.8	TGCCGCGATAGATCTCACACTT
		-111	4.1	TTCTGTGGCGCAGATCACCTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04633	-172	4.3	TGTTGTGATACATCTCACGCCA
		-121	4.2	ATATGTGGAGTCGATCACCTAA
Enterobacter sp. 638	Ent638_0424	-265	3.8	AAACCTTATCCGCGTCACACTT
		-189	4.6	TAGCGTGATATTCATCACGCAA
Erwinia amylovora ATCC 49946	EAM_0469	-156	3.8	TGATGTGAGTTGTCTCGCTTTG

Position: -105 Score: 5.1 Sequence: ATGTGTGATCTAAATCACTTTT Locus tag: YintA_01001443
	YintA_01001443	-105	5.1	ATGTGTGATCTAAATCACTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aaeR
Ortholog function: LysR-family transcriptional regulator
Escherichia coli str. K-12 substr. MG1655	b3243	-37	5.3	TTATGTGATCTAAATCACTTTT
Salmonella typhimurium LT2	STM3367	-37	5.3	TTATGTGATCTAAATCACTTTT
Citrobacter koseri ATCC BAA-895	CKO_04651	-37	5.3	ATATGTGATCTAAATCACTTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03652	-55	5.1	ATGTGTGATCTAAATCACTTTT
Enterobacter sp. 638	Ent638_3680	-37	5.3	ATATGTGATCTAAATCACTTTT
Erwinia amylovora ATCC 49946	EAM_3128	-37	5.3	AAATGTGATCTAAATCACTTTT
Yersinia pestis KIM	y0180	-55	5.1	ATGTGTGATCTAAATCACTTTT
Serratia proteamaculans 568	Spro_4393	-37	4.9	ATCTGTGATCTAAATCACTTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0276	-37	5.1	TAGTGTGATCTAAATCACTTTT
Edwardsiella tarda EIB202	ETAE_3129	-131	4.5	ATCTGTGACGCAAATCACTTTT

Position: -212 Score: 4.1 Sequence: AATTGTGATGTTTAGTAGAAAA Locus tag: YintA_01001462
	YintA_01001462	-212	4.1	AATTGTGATGTTTAGTAGAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dusB
Ortholog function: tRNA-dihydrouridine synthase B
Escherichia coli str. K-12 substr. MG1655	b3260	-297	4.4	AAGTGCGAGCAAGCTCACAAAA
		-212	4.3	AATTGAGAACTTACTCAAATTT
Citrobacter koseri ATCC BAA-895	CKO_04672	-212	3.7	AAATGAGAAGTTACGCAAAATT
Enterobacter sp. 638	Ent638_3699	-299	4.1	AAATGGGACCCAGATCGCAAAG
Erwinia amylovora ATCC 49946	EAM_3146	-219	4	TATTGTTAACTTGCTCACAAGA
Yersinia pestis KIM	y0213	-57	4.3	TAACGTGATGTTATTTATAATT
Proteus mirabilis HI4320	PMI3623	-94	3.8	TTTCGCGATTTGGTTAAACTTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4088	-191	3.7	CTAAGTGATAAACTTTACCAAT

Position: -258 Score: 3.5 Sequence: AAGTGTTATTAGATTAGCATCA Locus tag: YintA_01001521
	YintA_01001521	-258	3.5	AAGTGTTATTAGATTAGCATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gdhA
Ortholog function: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Escherichia coli str. K-12 substr. MG1655	b1761	-106	3.5	TTTCTTGCTTACCGTCACATTC
Salmonella typhimurium LT2	STM1299	-107	3.6	TTTCTTGCTTACCGTCACATTG
		-55	3.6	TATTCTGATAAAACGCAAATAC
Citrobacter koseri ATCC BAA-895	CKO_01789	-107	3.4	TTTCTTGCTTACCGTCACACTG
Enterobacter sp. 638	Ent638_1685	-110	3.3	AATTTTCACTTGCCTCGCAAAG
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0051	-234	3.6	TTTTGTTATATAACAAAAACTT
Proteus mirabilis HI4320	PMI3008	-195	3.4	AATCCTGATTTTATTAGCCTTT
		-88	3.5	AAACAATATCAACCTCACATAA
Photorhabdus luminescens subsp. laumondii TTO1	plu0122	-92	3.5	AAACACAACTTACCTCACATTT

Position: -325 Score: 3.8 Sequence: AAGTTATATTTGCATCACAAAT Position: -151 Score: 4.2 Sequence: TTTAGTGATCATCATCAAAACA Position: -126 Score: 3.8 Sequence: CGTTGTGATCCGTGAAACACTT Locus tag: YintA_01001522
	YintA_01001522	-325	3.8	AAGTTATATTTGCATCACAAAT
		-151	4.2	TTTAGTGATCATCATCAAAACA
		-126	3.8	CGTTGTGATCCGTGAAACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uspA3
Ortholog function: Universal stress protein A
Enterobacter sp. 638	Ent638_3909	-195	3.8	AAAGTCGATCGGGTTCACGTTT
Yersinia pestis KIM	y3859	-151	3.6	ATTAGTGATCATTGTCAAAACC
Serratia proteamaculans 568	Spro_4691	-123	4	CAGTGTGATCGCCTCAACATAT
Proteus mirabilis HI4320	PMI3009	-290	3.6	AGTTGTTCGCTTTTTCAAAAAA
		-113	3.8	AGTTGTGATCAAGGCAACATCT

Position: -263 Score: 4.7 Sequence: AGATGTGACTTTTATCACAAAG Locus tag: YintA_01001542
	YintA_01001542	-263	4.7	AGATGTGACTTTTATCACAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntT
Ortholog function: gluconate transporter
Yersinia pestis KIM	y3875	-217	4	TATGTTGATCTCTATCTCAGAA
		-147	4.1	TATCATGATACCGGTAACAAAT
		-123	4.6	AGATGTGACTTTTATCACAACA
Serratia proteamaculans 568	Spro_4651	-243	4.2	AAGTTTGATCTCTATCCCAGAA
		-173	3.8	TATCATGATACCGGTAACAATG
		-147	3.7	TGCGGTGATATTGATCGCGATA

Position: -57 Score: 3.6 Sequence: AATCGTGAGCGAAAACGAACAT Locus tag: YintA_01001556
	YintA_01001556	-57	3.6	AATCGTGAGCGAAAACGAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpD
Ortholog function: glycerol-3-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655	b3426	-116	4.4	TAATGTTATACATATCACTCTA
Salmonella typhimurium LT2	STM3526	-116	4.4	TAATGTTATACATATCACTCTA
Citrobacter koseri ATCC BAA-895	CKO_04845	-116	4.5	TAATGTTATATGTATCACTCTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03792	-119	3.7	ATATGTTACACCCATCACTTCA
		-58	3.7	TATAGTGAGCGATATCGAGCAT
Enterobacter sp. 638	Ent638_3835	-116	4.4	TTATGTTATCTCTATCACTCAA
		-55	4	TATTATGAGCGATATCGAACAT
Erwinia amylovora ATCC 49946	EAM_3265	-124	4	AGACGTTATCGGCATCACGCAT
Yersinia pestis KIM	y3891	-129	4.4	AAATGTTACCTCCATCACGCAT
Serratia proteamaculans 568	Spro_4642	-129	3.6	AACTGTTACCTCTATCACGCCT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4141	-144	4.3	TAATGTGACAACTATCATCATA
		-124	4.4	TATTGTTAGCTTCATCACGCAT
Edwardsiella tarda EIB202	ETAE_3312	-124	4.3	TTGTGTTATCCGCATCGCGTAA
Proteus mirabilis HI4320	PMI2930	-129	4.4	AATTGTTATTTATATCACGCAG

Position: -202 Score: 4.7 Sequence: AATTGTGATCCGGTGCAACTTA Locus tag: YintA_01001560
	YintA_01001560	-202	4.7	AATTGTGATCCGGTGCAACTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: malT
Ortholog function: transcriptional regulator MalT
Escherichia coli str. K-12 substr. MG1655	b3418	-142	4.3	AATTGTGACACAGTGCAAATTC
Salmonella typhimurium LT2	STM3515	-143	4.3	AATTGTGACAGAGTGCAAATTC
Citrobacter koseri ATCC BAA-895	CKO_04840	-142	4.3	AATTGTGACAGAGTGCAAATTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03788	-142	4.4	ATTTGTGACATAGAGCAAATTC
Enterobacter sp. 638	Ent638_3831	-142	4.6	AATTGTGACAGAGTGCAAATTA
Yersinia pestis KIM	y3900	-202	4.6	AATTGTGATCCGTAGCAACTTA
Serratia proteamaculans 568	Spro_4637	-203	4	AAGTGTGATCAATAGCAATATA
Edwardsiella tarda EIB202	ETAE_3303	-212	3.8	AAATGTGATCAGCCGCAATTTC

Position: -96 Score: 4.8 Sequence: TAATTTGAGCCGGTTCACACTT Locus tag: YintA_01001642
	YintA_01001642	-96	4.8	TAATTTGAGCCGGTTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: deaD
Ortholog function: ATP-independent RNA helicase
Salmonella typhimurium LT2	STM3280.S	-154	3.9	CTTTTTGATTGCCATCACCTTC
		-99	4.4	TACTTTGAGCCGGTTCACACTT
Citrobacter koseri ATCC BAA-895	CKO_04559	-103	3.9	CTTTTTGATTGCCATCACCTTC
		-48	4.4	TACTTTGAGCCGGTTCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03570	-154	3.8	TTTTTTGCTTGCCATCACCTTC
		-99	4.4	TACTTTGAGCCGGTTCACACAT
Enterobacter sp. 638	Ent638_3599	-154	4.1	TCTTATGATTGCCATCACCTTA
		-99	4.4	TACTTTGAGCCGGTTCACACTT
Erwinia amylovora ATCC 49946	EAM_3065	-99	4.8	TAATTTGAGCCGGTTCACACTT
Yersinia pestis KIM	y0696	-96	4.8	TAATTTGAGCCGGTTCACACTT
Serratia proteamaculans 568	Spro_0495	-96	4.8	TAATTTGAGCCGGTTCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0718	-96	4.4	CAATTTGAGCCGGTTCACACTT
Edwardsiella tarda EIB202	ETAE_0411	-96	4.8	TAATTTGAGCCGGTTCACACTT
Proteus mirabilis HI4320	PMI3424	-80	5	TAATTTGAGCCAGTTCACATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4523	-95	5	TAATTTGAGCCAGTTCACATTT

Position: -149 Score: 5.4 Sequence: ATATGTGATTCGCATCACACTT Locus tag: YintA_01001672
	YintA_01001672	-149	5.4	ATATGTGATTCGCATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: udp
Ortholog function: Uridine phosphorylase (EC 2.4.2.3)
Escherichia coli str. K-12 substr. MG1655	b3831	-144	5.2	TTATGTGATTTGCATCACTTTT
		-92	4.2	CATGGTGATGAGTATCACGAAA
Salmonella typhimurium LT2	STM3968	-144	5.1	TATTGTGATGAACATCACTTTT
		-92	4.1	CATAGTGATGGCTGTCACGAAA
Citrobacter koseri ATCC BAA-895	CKO_00173	-143	5.2	TTATGTGATGTAAATCACTATT
		-91	3.9	CATGGTGATGAGCGTCACGAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04327	-143	5.2	TAATGTGATGTGTATCACTATT
		-91	4.1	CTTGGTGACTATCATCACAAAA
Enterobacter sp. 638	Ent638_3962	-143	4.7	TAGTGTGATGCATGTCACTATT
Erwinia amylovora ATCC 49946	EAM_0200	-143	4.6	AATTGCGACTTGTATCACCTTT
		-90	4	ATTAAGGATGTTCATCACATAA
Yersinia pestis KIM	y0444	-149	5.4	ATGTGTGATTTAAATCACAATT
		-97	4	CAAGGTGACATAAATCACGAAA
Serratia proteamaculans 568	Spro_0244	-143	5.3	TTTTGTGACTTTAATCACAAAA
		-125	3.7	AAAAGTTATGTAGATTGCATTC
		-91	4.1	CATAGTGATGGTTGTCACGAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0185	-197	5.1	AAAAGTGATTTAAGTCACATTT
Edwardsiella tarda EIB202	ETAE_0143	-148	4.7	TATTGTGAAAATAATCACAGTT
Proteus mirabilis HI4320	PMI3532	-145	5.1	ATTTGTGATAACTATCACGTTT
		-93	3.6	ACAGGTGACGTCAATCACTAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu4417	-271	5.2	TTTTGTGATTTATATCTCAAAA
		-219	4	TGAAGTGACATTTATCACTAAA

Position: -155 Score: 4.2 Sequence: ACCTGTGACTTTGATCACAATC Locus tag: YintA_01001710
	YintA_01001710	-155	4.2	ACCTGTGACTTTGATCACAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpA
Ortholog function: sn-glycerol-3-phosphate dehydrogenase subunit A
Escherichia coli str. K-12 substr. MG1655	b2241	-165	4.6	AAATGTGAATTGCCGCACACAT
Salmonella typhimurium LT2	STM2284	-163	5	TAATGTGAATTACAGCACATAT
Citrobacter koseri ATCC BAA-895	CKO_00536	-163	4.7	TAATGTGAATTACAGCACAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02647	-165	4.3	TACTGTGAAACATCGCACAATT
		-115	3.8	ATGTGAGCACGAAATCACATAA
Enterobacter sp. 638	Ent638_2805	-163	4.1	TACTGTGAATCAACGCACAGAT
Yersinia pestis KIM	y0404	-231	3.6	AATTGTTACCTATTTTATGAAA
		-155	4.4	ACCTGTGATTTTGATCACAATC
Serratia proteamaculans 568	Spro_0200	-231	3.6	CGCTGTGATGGATGGCGCAATT
		-138	4.9	AATCGTGATTATGATCACATTC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4165	-148	5.1	TTTAGTGATGCAAATCACACTT
Edwardsiella tarda EIB202	ETAE_3115	-247	4	TACTGTGAGAGATCGCTCATAT
		-142	4.8	TAGAGTGATTTTGATCACATTG
Proteus mirabilis HI4320	PMI3592	-262	3.7	TACTGTGAAGTAATACTCAGTT
		-170	5.5	ATTTGTGATTAGTATCACATAT

Position: -323 Score: 3.6 Sequence: TTGTTTGATAAGGAACAAAAAC Position: -263 Score: 3.8 Sequence: GATTGTGATCAAAGTCACAGGT Position: -170 Score: 3.8 Sequence: AAATGAGCCATCACTCACAGAT Locus tag: YintA_01001712
	YintA_01001712	-323	3.6	TTGTTTGATAAGGAACAAAAAC
		-263	3.8	GATTGTGATCAAAGTCACAGGT
		-170	3.8	AAATGAGCCATCACTCACAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpT
Ortholog function: glycerol-3-phosphate transporter
Escherichia coli str. K-12 substr. MG1655	b2240	-219	3.7	TTGTTTGATTTCGCGCATATTC
		-179	3.6	AAACGTGATTTCATGCGTCATT
		-129	4.6	ATGTGTGCGGCAATTCACATTT
Salmonella typhimurium LT2	STM2283	-220	3.6	ATGTTTGATTTCGCGCATAATC
		-180	4.2	AAACGTGATTTCGTGCGCCTTT
		-131	5.2	ATATGTGCTGTAATTCACATTA
Citrobacter koseri ATCC BAA-895	CKO_00537	-221	3.6	TTGTTTGATTTCGCGCATAATC
		-181	4	AAACGTGATTTCGTGCGCTTTT
		-132	4.8	ATCTGTGCTGTAATTCACATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02646	-218	3.8	TTGTTTGATTTCGAGCATATTC
		-178	4.6	TTATGTGATTTCGTGCTCACAT
		-128	4.5	AATTGTGCGATGTTTCACAGTA
Enterobacter sp. 638	Ent638_2804	-201	3.6	TTGTTTGATTTCGAACATAATC
		-161	3.8	AAGCGTGATCTCATGCGCTTAT
		-111	4	ATCTGTGCGTTGATTCACAGTA
Erwinia amylovora ATCC 49946	EAM_0195	-240	3.7	AAACGCGATGCGGTTAACGATG
		-147	3.7	ATTTGTGCCTCTCTTCACGGTC
Serratia proteamaculans 568	Spro_0199	-249	4.5	GAATGTGATCATAATCACGATT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4166	-253	3.7	ATGTTTGATAAAGAGCAAAAAC
		-193	4.9	AAGTGTGATTTGCATCACTAAA
Edwardsiella tarda EIB202	ETAE_3116	-200	3.7	ATATGAGCGATCTCTCACAGTA
Proteus mirabilis HI4320	PMI3591	-291	3.6	ATGTTTGATAATGAGCAAAAAC
		-232	5.4	ATATGTGATACTAATCACAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu4119	-250	4.9	TATTGTGACAATTGTCACAATT

Position: -9 Score: 4.6 Sequence: AGTTGTGCTATGGCTCACAGAA Locus tag: YintA_01001715
	YintA_01001715	-9	4.6	AGTTGTGCTATGGCTCACAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pldB
Ortholog function: Lysophospholipase L2 (EC 3.1.1.5)
Citrobacter koseri ATCC BAA-895	CKO_00166	-60	3.8	TATTGTGTCAGGCATCATAAAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04321	-56	3.8	TTGTGTGATACACGGTAAAAAA
Enterobacter sp. 638	Ent638_3971	-56	4.3	TTTTGTGATGCGTCACGAAAAA
Yersinia pestis KIM	y0400	-144	4.8	AGTTGTGCTATGGCTCACAAAA
Serratia proteamaculans 568	Spro_0196	-88	3.8	TTGTAAGAATTGAATCACAATA
		-53	4.2	TCTTGTGCCAGAGGTCACATTT
Edwardsiella tarda EIB202	ETAE_3343	-217	3.9	CGGTGTGATAATCCTCAAACTT

Position: -206 Score: 4 Sequence: AGGTGTTAGATTGATCACGTTT Locus tag: YintA_01001735
	YintA_01001735	-206	4	AGGTGTTAGATTGATCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyaA
Ortholog function: Adenylate cyclase (EC 4.6.1.1)
Yersinia pestis KIM	y0382	-151	4	AGGTGTTAGATTGATCACGTTT
Serratia proteamaculans 568	Spro_0179	-115	4	AGGTGTTAGATTGATCACGTTT
Edwardsiella tarda EIB202	ETAE_0119	-119	4	AGGTGTTAAATTGATCACGTTT

Position: -279 Score: 4.2 Sequence: AAACGTGATCAATCTAACACCT Locus tag: YintA_01001736
	YintA_01001736	-279	4.2	AAACGTGATCAATCTAACACCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemC
Ortholog function: porphobilinogen deaminase
Escherichia coli str. K-12 substr. MG1655	b3805	-236	4.2	AAACGTGATCAATTTAACACCT
Salmonella typhimurium LT2	STM3938	-219	4.2	AAACGTGATCAATTTAACACCT
Citrobacter koseri ATCC BAA-895	CKO_00147	-220	4.2	AAACGTGATCAATTTAACACCT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04304	-232	4.2	AAACGTGATCAATTTAACACCT
Enterobacter sp. 638	Ent638_3987	-211	4.2	AAACGTGATCAATCTAACACCT
Serratia proteamaculans 568	Spro_0178	-223	4.2	AAACGTGATCAATCTAACACCT
Edwardsiella tarda EIB202	ETAE_0118	-205	4.2	AAACGTGATCAATTTAACACCT

Position: -184 Score: 3.8 Sequence: AAAATTGATATAAAACATAAAT Position: -131 Score: 3.8 Sequence: AAGATTGATTTAAGTCAAAGAA Locus tag: YintA_01001766
	YintA_01001766	-184	3.8	AAAATTGATATAAAACATAAAT
		-131	3.8	AAGATTGATTTAAGTCAAAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: grcA
Ortholog function: Autonomous glycyl radical cofactor
Serratia proteamaculans 568	Spro_3682	-140	3.8	AAAATTGACTTTAATCAAAGAA

Position: -280 Score: 4.6 Sequence: TTTTGCGATAAACATCACATTG Locus tag: YintA_01001792
	YintA_01001792	-280	4.6	TTTTGCGATAAACATCACATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: chbB
Ortholog function: N,N'-diacetylchitobiose-specific PTS system , EIIB component
Yersinia pestis KIM	y1251	-214	4.5	TTTTGCGATAACCATCACATTG
Serratia proteamaculans 568	Spro_0834	-177	4.6	ATTTGCGAGACAGATCACACTA
		-143	3.6	AAATGTGAAGAGGGTCAATCAG

Position: -108 Score: 3.7 Sequence: TTATTTTATACAAAACATATAT Locus tag: YintA_01001837
	YintA_01001837	-108	3.7	TTATTTTATACAAAACATATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yafK
Ortholog function: hypothetical protein
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00238	-208	3.7	AAATGCGAGCTATTGCGCAAAG
Yersinia pestis KIM	y0949	-217	3.7	TTATTTTATACAAAACATATAT
Serratia proteamaculans 568	Spro_0952	-136	4.2	TTTTTTTATACACAACACATAT
Proteus mirabilis HI4320	PMI0351	-297	3.7	AATTGTTACTATTTTCTCTTAT
		-228	3.7	TCGAGTGATTTAGCTCAAGCAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1195	-232	3.9	TCAAGTGATTTAGTTCAAGCAA

Position: -102 Score: 3.9 Sequence: ATTTTTGACAAAAATAACATCA Locus tag: YintA_01001943
	YintA_01001943	-102	3.9	ATTTTTGACAAAAATAACATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirC
Ortholog function: nitrite transporter NirC
Escherichia coli str. K-12 substr. MG1655	b3367	-124	3.2	AAAATTTATACAAATCAGCAAT
		-76	3.4	GAATTTGATTTACATCAATAAG
Enterobacter sp. 638	Ent638_3795	-76	3.3	GTATTTGATTTGCATCAATAAG

Position: -75 Score: 3.4 Sequence: CAAATTGATTTACATCAAGAAG Position: -4 Score: 3.5 Sequence: AAAAATGAGCAAAGTCAAACTT Locus tag: YintA_01001945
	YintA_01001945	-75	3.4	CAAATTGATTTACATCAAGAAG
		-4	3.5	AAAAATGAGCAAAGTCAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirB
Ortholog function: nitrite reductase (NAD(P)H) subunit
Escherichia coli str. K-12 substr. MG1655	b3365	-124	3.2	AAAATTTATACAAATCAGCAAT
		-76	3.4	GAATTTGATTTACATCAATAAG
Salmonella typhimurium LT2	STM3474	-76	3.4	GAATTTGATTTACATCAATAAG
Citrobacter koseri ATCC BAA-895	CKO_04789	-76	3.4	GAATTTGATTTACATCAATAAG
Enterobacter sp. 638	Ent638_3793	-76	3.3	GTATTTGATTTGCATCAATAAG
Yersinia pestis KIM	y3945	-75	3.7	CAAATTGATTTACATCAAGAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4079	-186	4.2	AAGCGTGCTATAGATCTCACTT
Proteus mirabilis HI4320	PMI1479	-129	3.5	TTTTGTGCACTTTATTAACAAT

Position: -277 Score: 4.5 Sequence: AAATGAGATGTTTCTCGCAAAA Position: -226 Score: 4 Sequence: AGACGTGATCCCTATAGCAGAA Position: 14 Score: 4 Sequence: TTTAGTGACCTTCATTGCACTT Locus tag: YintA_01001952
	YintA_01001952	-277	4.5	AAATGAGATGTTTCTCGCAAAA
		-226	4	AGACGTGATCCCTATAGCAGAA
		14	4	TTTAGTGACCTTCATTGCACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppiA
Ortholog function: Peptidyl-prolyl cis-trans isomerase ppiA precursor (EC 5.2.1.8)
Yersinia pestis KIM	y3951	-247	4.5	AAATGAGATATTTCTCGCAAAA
		-81	3.6	AAATGTGCATTCTGTTACGTAA
Serratia proteamaculans 568	Spro_4589	-181	3.9	ATGCGTGATGCAGTTGGCAAAA

Position: -314 Score: 3.3 Sequence: TTTTCTGATTAAGACTACCCTT Locus tag: YintA_01001957
	YintA_01001957	-314	3.3	TTTTCTGATTAAGACTACCCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: crp
Ortholog function: cyclic AMP receptor protein
Escherichia coli str. K-12 substr. MG1655	b3357	-154	3.3	TACATTGATGTACTGCATGTAT
		-136	3.3	GTATGCAAAGGACGTCACATTA
Salmonella typhimurium LT2	STM3466	-159	3.1	TACATTGACGTACTGCATGTAT
Citrobacter koseri ATCC BAA-895	CKO_04777	-160	3.1	TACATTGACGTACTGCATGTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03743	-158	3.3	TACATTGATGTACTGCATGTAT
Enterobacter sp. 638	Ent638_3784	-128	2.9	AAACATTACAGGCTGCAAACAT
Yersinia pestis KIM	y3956	-309	3	AATTTAGACTACCCTTTCATTT
Serratia proteamaculans 568	Spro_4580	-121	3.5	ATTTATGACACGCCTCAAAACC
Proteus mirabilis HI4320	PMI2820	-135	3.3	TATTATAATCTATTCCTTATTA

Position: -217 Score: 3.9 Sequence: AAATGGGCTGATGTGCACATTT Position: -97 Score: 4 Sequence: ATGCGTGATCTGCCGCCCAAAA Locus tag: YintA_01002031
	YintA_01002031	-217	3.9	AAATGGGCTGATGTGCACATTT
		-97	4	ATGCGTGATCTGCCGCCCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: acs
Ortholog function: acetyl-coenzyme A synthetase
Escherichia coli str. K-12 substr. MG1655	b4069	-100	4.1	TTGCGTGATCTGTCGCCCAAAT
Salmonella typhimurium LT2	STM4275	-100	4.1	TTGCGTGATCTGTCGCCCAAAT
Citrobacter koseri ATCC BAA-895	CKO_03816	-101	4.3	TTGCGTGATCTGCCGCGCAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04478	-101	3.9	TTGCGTGATCTGCCCCCCAATT
Enterobacter sp. 638	Ent638_0276	-101	4.1	TTGCGTGATCTGTCGCCCAAAT
Yersinia pestis KIM	y0510	-97	4.2	ATACGTGATCTGCCGCCCAAAA
Serratia proteamaculans 568	Spro_0297	-97	4	TTGCGTGATCTGCCGCCCAAAA
Proteus mirabilis HI4320	PMI3037	-97	4.5	TTTCGTGATCTTATGCGCAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu0074	-98	4.2	TTGCGTGATCTTCCGCGCAAAA

Position: -183 Score: 4.2 Sequence: TTTTGTGATGAGTTGCTTATTT Locus tag: YintA_01002101
	YintA_01002101	-183	4.2	TTTTGTGATGAGTTGCTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dgoR
Ortholog function: GntR domain protein
Escherichia coli str. K-12 substr. MG1655	b4479	-154	4.2	TTTTGTGATCTAAATTGTAGTA
Salmonella typhimurium LT2	STM3830	-154	4.2	TTTTGTGATCTAAATTGTAGTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04098	-154	4.1	TTTTGTGATCCAAATTGTAGTA
Enterobacter sp. 638	Ent638_0006	-154	4.2	TTTTGTGATCCAGATTGTAGTA
Serratia proteamaculans 568	Spro_0041	-103	4.2	TTTTGTGATCTTGATTGTAGTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4419	-164	4.2	TTTTGTGATCCAGATTGTAGTA

Position: -278 Score: 4.6 Sequence: TAGTGTGATCTGCGTCAACAAA Position: -234 Score: 4.8 Sequence: TGGTGTGACATTGATCACACAA Locus tag: YintA_01002124
	YintA_01002124	-278	4.6	TAGTGTGATCTGCGTCAACAAA
		-234	4.8	TGGTGTGACATTGATCACACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtlA
Ortholog function: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655	b3599	-206	4.5	TTTTGTGATGAACGTCACGTCA
		-162	5.4	TTATGTGATTGATATCACACAA
		-113	3.3	TTCAGTGCCAGATTTCGCAGTA
Salmonella typhimurium LT2	STM3685	-207	4.8	CTTTGTGATCAATATCACATCA
		-163	5.4	TTATGTGACGCAAATCACATAA
Citrobacter koseri ATCC BAA-895	CKO_05054	-203	5.2	TTTTGTGATCAATATCACATCA
		-159	5	TCATGTGATCCAAATCACACAA
		-110	3.4	TTCAGTGCCAGATTTCGCACTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03942	-208	4.9	TTTTGTGATCATCATCACTAAA
		-164	5.2	TCATGTGATCCAAATCACATAA
		-115	3.4	TTCAGTGCCAGATTTCGCACTA
Enterobacter sp. 638	Ent638_0136	-224	3.4	TATTTTTTTCATACTCTCATTT
		-205	4.8	TTTTGTGATGGCGATCACCTCA
		-161	5.1	TTGCGTGATGCAGATCACACAA
Erwinia amylovora ATCC 49946	EAM_3416	-229	3.3	CATTGCGAATATCTTTACACTT
		-210	3.9	CTTCGTGACTCATGTCACTAAA
		-166	4.8	TTAAGTGACCCGCATCACACTT
		-95	3.2	CGTTTTGATCGTGATCCCTCAA
		-34	3.5	ACATGAGATTTGCATCATTAAT
Yersinia pestis KIM	y4087	-223	4.6	AGATGTGATCTTAATCAACAAA
		-179	4.5	TTGTGTGACTTTCGTCACGAAA
Serratia proteamaculans 568	Spro_0072	-195	5.2	AAATGTGATGTATATCACTATA
		-151	4.5	GTTGGTGATCTGCATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0087	-230	5.1	TTTTGTGAAGTAAATCACCTAT
		-186	4.5	TTGTGTGATTTTTGTCACGTTG

Position: -252 Score: 4.5 Sequence: AATCGTGATCCTAATCACTGTT Locus tag: YintA_01002181
	YintA_01002181	-252	4.5	AATCGTGATCCTAATCACTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Enterobacter sp. 638	Ent638_1222	-295	4.2	TATCGTGACTGTGATCACTGTT
Erwinia amylovora ATCC 49946	EAM_1168	-249	4.4	AAGTGTGATTTTTGTCACTGTT
		-190	3.6	TAATGAGATTGTGATCCACTTA
Yersinia pestis KIM	y3071	-254	4.5	AATCGTGATCCTAATCACTGTT
Serratia proteamaculans 568	Spro_1263	-253	4.3	ATCCGTGATCTAAATCACTGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1357	-265	4.7	ATTCGTGATCTAAATCACTGTT
Edwardsiella tarda EIB202	ETAE_2588	-261	3.7	ATGCGTGACCGTTGTCACTGTT
Proteus mirabilis HI4320	PMI0565	-264	4.3	AAAAGTGATCCCTCTCACTGTT

Position: -272 Score: 3.8 Sequence: TAAATTGTTCTGGATCAAACTA Locus tag: YintA_01002190
	YintA_01002190	-272	3.8	TAAATTGTTCTGGATCAAACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydA
Ortholog function: cytochrome d terminal oxidase, polypeptide subunit I
Proteus mirabilis HI4320	PMI0573	-247	3.8	AAATATGCTGTTACTAACCTAA

Position: -322 Score: 4.6 Sequence: TTTTGTGATCAGTTGCACGCTT Locus tag: YintA_01002265
	YintA_01002265	-322	4.6	TTTTGTGATCAGTTGCACGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpI
Ortholog function: ATP synthase subunit I
Escherichia coli str. K-12 substr. MG1655	b3739	-263	4.8	ATATGTGATCTGAAGCACGCTT
Salmonella typhimurium LT2	STM3872	-262	4.6	ATGTGTGATCTGGTGCACGCTT
		-211	4.1	TTTTGTACGATCGTTCACACTT
Citrobacter koseri ATCC BAA-895	CKO_00079	-262	4.7	ATATGTGATCCGAAGCACGCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04144	-262	4.7	TTATGTGATCTGATGCACGCTT
Enterobacter sp. 638	Ent638_4125	-261	4.8	TTTTGTGATCTCGTGCACGCTT
Erwinia amylovora ATCC 49946	EAM_3481	-264	4.4	ATTTGTGATCGTGGACACGCTT
Yersinia pestis KIM	y4142	-263	5.4	TTATGTGATGTATTTCACGTTT
Serratia proteamaculans 568	Spro_0001	-265	4.4	TATTGTGAGCAACTACACGTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4519	-254	5	TTATGTGAGTCACATCACAGAT
Edwardsiella tarda EIB202	ETAE_3526	-297	3.7	AATCGTGAAAATATTTAAATTA
Proteus mirabilis HI4320	PMI3057	-259	5	TTGTGTGTTCTAGATCACATTA
Photorhabdus luminescens subsp. laumondii TTO1	plu0047	-265	5.7	TTATGTGATTTAAATCACATTT

Position: -53 Score: 4.5 Sequence: AAGTATGATGTGTATAACACTA Locus tag: YintA_01002267
	YintA_01002267	-53	4.5	AAGTATGATGTGTATAACACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpE
Ortholog function: ATP synthase subunit C
Escherichia coli str. K-12 substr. MG1655	b3737	-263	4.8	ATATGTGATCTGAAGCACGCTT
Salmonella typhimurium LT2	STM3870	-262	4.6	ATGTGTGATCTGGTGCACGCTT
		-211	4.1	TTTTGTACGATCGTTCACACTT
Citrobacter koseri ATCC BAA-895	CKO_00077	-262	4.7	ATATGTGATCCGAAGCACGCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04142	-262	4.7	TTATGTGATCTGATGCACGCTT
Enterobacter sp. 638	Ent638_4127	-261	4.8	TTTTGTGATCTCGTGCACGCTT
Erwinia amylovora ATCC 49946	EAM_3479	-264	4.4	ATTTGTGATCGTGGACACGCTT
Yersinia pestis KIM	y4140	-263	5.4	TTATGTGATGTATTTCACGTTT
Serratia proteamaculans 568	Spro_0003	-265	4.4	TATTGTGAGCAACTACACGTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4517	-254	5	TTATGTGAGTCACATCACAGAT
Edwardsiella tarda EIB202	ETAE_3528	-297	3.7	AATCGTGAAAATATTTAAATTA
Proteus mirabilis HI4320	PMI3059	-259	5	TTGTGTGTTCTAGATCACATTA
Photorhabdus luminescens subsp. laumondii TTO1	plu0045	-265	5.7	TTATGTGATTTAAATCACATTT

Position: -134 Score: 4 Sequence: TACTGTGAACTACACCAAACTA Locus tag: YintA_01002268
	YintA_01002268	-134	4	TACTGTGAACTACACCAAACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpF
Ortholog function: ATP synthase subunit B
Escherichia coli str. K-12 substr. MG1655	b3736	-263	4.8	ATATGTGATCTGAAGCACGCTT
Salmonella typhimurium LT2	STM3869	-262	4.6	ATGTGTGATCTGGTGCACGCTT
		-211	4.1	TTTTGTACGATCGTTCACACTT
Citrobacter koseri ATCC BAA-895	CKO_00076	-262	4.7	ATATGTGATCCGAAGCACGCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04141	-262	4.7	TTATGTGATCTGATGCACGCTT
Enterobacter sp. 638	Ent638_4128	-261	4.8	TTTTGTGATCTCGTGCACGCTT
Erwinia amylovora ATCC 49946	EAM_3478	-264	4.4	ATTTGTGATCGTGGACACGCTT
Yersinia pestis KIM	y4139	-263	5.4	TTATGTGATGTATTTCACGTTT
Serratia proteamaculans 568	Spro_0004	-265	4.4	TATTGTGAGCAACTACACGTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4516	-254	5	TTATGTGAGTCACATCACAGAT
Edwardsiella tarda EIB202	ETAE_3529	-297	3.7	AATCGTGAAAATATTTAAATTA
Proteus mirabilis HI4320	PMI3060	-259	5	TTGTGTGTTCTAGATCACATTA
Photorhabdus luminescens subsp. laumondii TTO1	plu0044	-265	5.7	TTATGTGATTTAAATCACATTT

Position: -175 Score: 4 Sequence: ATTCATGACGGCTATCACAATC Locus tag: YintA_01002296
	YintA_01002296	-175	4	ATTCATGACGGCTATCACAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadH
Ortholog function: 2,4-dienoyl-CoA reductase [NADPH] (2,4-dienoyl coenzyme A reductase)
Escherichia coli str. K-12 substr. MG1655	b3081	-112	3.9	CTTTTTGAATCCCATCACAAAC
Salmonella typhimurium LT2	STM3219	-113	4.3	TTTTTTGAATCCCATCACAATC
Citrobacter koseri ATCC BAA-895	CKO_04487	-113	4.3	TTTTTTGAATCCCATCACAATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03510	-111	3.9	TTCTTTGAATCCCATCACAATC
Enterobacter sp. 638	Ent638_3539	-111	3.9	ATCTTTGAATCCCATCACATTC
Erwinia amylovora ATCC 49946	EAM_0507	-169	3.8	AACCGTGACTGAGATCGCTAAA
Yersinia pestis KIM	y3589	-131	4	ATTCATGACGGCTATCACAATC
Serratia proteamaculans 568	Spro_4309	-126	4.2	ATTCATGACATCTATCACATTC
Proteus mirabilis HI4320	PMI3702	-213	3.8	TATTATTATATGATTAAAAAAT
		-103	3.8	TTCCATGATTAAGATCACAACT
Photorhabdus luminescens subsp. laumondii TTO1	plu3990	-161	4.3	TTTCATGACCTTCATCACATTC

Position: -162 Score: 4.1 Sequence: TTTTATGATCCAGATCAATTTC Locus tag: YintA_01002395
	YintA_01002395	-162	4.1	TTTTATGATCCAGATCAATTTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W
Escherichia coli str. K-12 substr. MG1655	b1256	-166	4.9	AAAATTGATTTAAATCACATTA
		-82	3.8	TAATGTGATCTATGTAGGATCA
Salmonella typhimurium LT2	STM1732	-82	4.2	AAATGTGATCTGTATTAGATCA
Citrobacter koseri ATCC BAA-895	CKO_01333	-82	3.9	TAATGTGATCTGTATTGGATCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01248	-101	3.9	CATTGCGATCGGTAGCAAAAAT
		-45	4	TAGTGTGATCTAAAACAGATCA
Enterobacter sp. 638	Ent638_2283	-121	3.7	AAAATTAATCTGGATCAACAAA
Yersinia pestis KIM	y2044	-69	3.9	AGATGTGATCTCGATTAGATCA
Serratia proteamaculans 568	Spro_2674	-135	3.8	TTTTTTGATTCAGATCAATCCT
Edwardsiella tarda EIB202	ETAE_1528	-161	3.9	CTGATTGATGTCTATCAAATTT
Proteus mirabilis HI4320	PMI1350	-168	4.6	AAATTTGATGTGGATCAATTAT
		-85	3.8	AGTTGTGATCGGCATTAGATCA
Photorhabdus luminescens subsp. laumondii TTO1	plu2478	-164	4.3	AACTTTGATTTGGATCAAGTTA
		-39	3.8	TATTTTGATTGACTTTAAATCA

Position: -285 Score: 5.3 Sequence: TTTTGTGATATAAATCACGAAA Locus tag: YintA_01002416
	YintA_01002416	-285	5.3	TTTTGTGATATAAATCACGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Escherichia coli str. K-12 substr. MG1655	b1241	-241	5	AAATTTGATTTGGATCACGTAA
Salmonella typhimurium LT2	STM1749	-242	4.9	AATCTTGATTTAGATCACACAA
Citrobacter koseri ATCC BAA-895	CKO_01318	-242	4.9	AAATTTGATCTGGATCACGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02199	-237	4.7	ATACTTGATCTAAATCACGTAA
Enterobacter sp. 638	Ent638_2304	-253	4.1	TAAATTGATTCAGATCATGTTT
Erwinia amylovora ATCC 49946	EAM_1900	-223	3.9	ATTGATGATCTGCATCATCTTT
Yersinia pestis KIM	y2023	-286	5.3	TTTTGTGATTTAAATCACGAAA
Serratia proteamaculans 568	Spro_2704	-278	5.1	TTTTATGATTTAAATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2326	-315	4.5	AAGTTCGATGTTGATCACAAAA
Edwardsiella tarda EIB202	ETAE_1508	-265	5	TTTCGTGACCTTAATCACAAAA
Proteus mirabilis HI4320	PMI1486	-246	5.4	TATTGTGATGTAGATCACTTTA
		-187	3.7	AAAGGAGATCTTTTTAAAATAT
Photorhabdus luminescens subsp. laumondii TTO1	plu2496	-237	3.7	TATTTTTATTAGATTAAAAATT
		-138	4.6	TTATGTGATTAAGATCAATATA

Position: -236 Score: 4.4 Sequence: TATTGTGAGATTGGTCATGTAA Locus tag: YintA_01002417
	YintA_01002417	-236	4.4	TATTGTGAGATTGGTCATGTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tdk
Ortholog function: Thymidine kinase (EC 2.7.1.21)
Yersinia pestis KIM	y2145	-208	4.9	TATTGTGAGATTGCTCATATAA
Serratia proteamaculans 568	Spro_2705	-203	4.3	AAATGTGATGTCAGACAGAAAT
Edwardsiella tarda EIB202	ETAE_1506	-206	4	AACTGTTAGGTCGATCACTTAT
Photorhabdus luminescens subsp. laumondii TTO1	plu2497	-157	4.1	TGGTGTGATGGTGGTCATGAAT

Position: -32 Score: 4.6 Sequence: AATTGTGAACTAACTCACGATC Locus tag: YintA_01002511
	YintA_01002511	-32	4.6	AATTGTGAACTAACTCACGATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: dadA
Ortholog function: D-amino acid dehydrogenase small subunit
Escherichia coli str. K-12 substr. MG1655	b1189	-116	4.7	AGATGTGAGCCAGCTCACCATA
Salmonella typhimurium LT2	STM1803	-107	4.6	ATATGTGAAGCACGTCACCATA
Citrobacter koseri ATCC BAA-895	CKO_01193	-107	4.5	AGATGTGAGGTGCGTCACCATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02309	-106	4.1	TGCTGTGAGTTAAGTCACCATA
Enterobacter sp. 638	Ent638_2363	-107	4.3	AGGTGTGAGGTAAGTCACCATA
Serratia proteamaculans 568	Spro_2746	-113	4.6	AATTGTGAATGTTGTCACGTTT
Proteus mirabilis HI4320	PMI1509	-121	4.7	AAATGTGATTTGACTCTAAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu2561	-114	5.4	AATTGTGATCTAAATCATAAAT

Position: -131 Score: 3.9 Sequence: AATAGTGATGTATATCCCAACC Locus tag: YintA_01002528
	YintA_01002528	-131	3.9	AATAGTGATGTATATCCCAACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadD
Ortholog function: long-chain-fatty-acid--CoA ligase
Escherichia coli str. K-12 substr. MG1655	b1805	-131	3.7	AATAGTGACGCGCTTCGCAACC
Salmonella typhimurium LT2	STM1818	-131	3.7	AATAGTGACGCGCTTCGCAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02322	-97	3.7	AATAGTGACGCGCTTCGCAACC
Erwinia amylovora ATCC 49946	EAM_1956	-130	3.9	TTTAGTGATGCGCTTCGCAACC
Yersinia pestis KIM	y2236	-80	4.1	AATAGTGATGTATATCTCAACC
Serratia proteamaculans 568	Spro_2760	-99	3.9	ATTAGTGACGTACATCGCAACC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2372	-132	3.8	ATTAGTGATCGTTCTCGCAACC
		-75	3.7	TAAAATAATGTTAATAACAATA
Proteus mirabilis HI4320	PMI1166	-121	4.4	TTTAGTGATACACTTCGCATCT
Photorhabdus luminescens subsp. laumondii TTO1	plu2134	-288	3.8	AAATGCTATCTTAAGCAAAAAA
		-137	4	ATTAGTGATGTGTATCTCAACC

Position: -113 Score: 3.8 Sequence: AACTGTGAACTTATGCGCGTTA Position: -81 Score: 3.8 Sequence: TTTTCTGCCAAACTTCACACTT Position: -28 Score: 3.9 Sequence: TTTTGCGATACATGTCGAATAG Locus tag: YintA_01002606
	YintA_01002606	-113	3.8	AACTGTGAACTTATGCGCGTTA
		-81	3.8	TTTTCTGCCAAACTTCACACTT
		-28	3.9	TTTTGCGATACATGTCGAATAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: cpdB
Ortholog function: 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor
Escherichia coli str. K-12 substr. MG1655	b4213	-118	3.8	AACTGTGATAGTGTCATCATTT
		-85	3.8	AATTGTGGCATTCTTCACTGTT
Salmonella typhimurium LT2	STM4403	-145	3.7	TTCTGTGAACACTCGCAAAAAA
Citrobacter koseri ATCC BAA-895	CKO_03616	-25	4.2	TTTTGTGTTTCAGATCTAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04607	-156	3.8	TTGTTTTATTTATATCGCATCA
		-87	3.7	TTTTCTGGCAAGATTCACATTT
		-35	4.2	TTCTGTGCTATCGCTCATAAAA
Enterobacter sp. 638	Ent638_0392	-34	4	TTTTGTGGCTTGGATCGAAAAA
Yersinia pestis KIM	y0653	-148	3.6	AACTGTGAGCGTCTACGCGTTA
		-116	3.8	TTTTCTGCCAAACTTCACACTT
		-63	4.4	TTTTGCGATACATATCGAATAT
Serratia proteamaculans 568	Spro_0453	-95	3.8	TTTTCTGCCACACTTCACAGTT

Position: -241 Score: 4.1 Sequence: TTTTATGATAACGATCATGTTT Position: -136 Score: 4.4 Sequence: TTATGAGATCTACGCCACAATT Locus tag: YintA_01002665
	YintA_01002665	-241	4.1	TTTTATGATAACGATCATGTTT
		-136	4.4	TTATGAGATCTACGCCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylA
Ortholog function: Xylose isomerase (EC 5.3.1.5)
Escherichia coli str. K-12 substr. MG1655	b3565	-224	3.9	ATTTATGACCGAGATCTTACTT
		-134	4.2	TTTTGCGAGCGAGCGCACACTT
Salmonella typhimurium LT2	STM3661	-260	3.9	TTATGCGAAATTCATCACAGCA
		-133	4.4	TTTTGAGAGCCAGAGCACATTT
Citrobacter koseri ATCC BAA-895	CKO_05021	-214	4.1	AATTATGACCGAGATCGTACTT
		-122	4.2	TTTTGCGAGGCGGCGCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03929	-234	4.1	TTTTGCGAGCTGGCGCACGTTT
Enterobacter sp. 638	Ent638_0156	-231	3.8	ATTTATGACCGTGATCTGATTT
		-135	3.9	TTTTGGGAGCCAGCGCACGTTT
Yersinia pestis KIM	y4057	-220	4.6	TTATGAGATCTACACCACAATT
Serratia proteamaculans 568	Spro_0098	-222	3.9	TTTTATGATGGCGGTCATGCTT
		-129	4.6	TTATGAGATCTGTCGCACATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0097	-223	4.7	TTTTTTGATGCGGGTCATATTT
		-135	4.4	TTTTGCGACACAGCGCACATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2275	-251	4.6	ATTTATGAGATAAATCACACAA

Position: -266 Score: 4.5 Sequence: AATTGTGGCGTAGATCTCATAA Position: -161 Score: 4.2 Sequence: AAACATGATCGTTATCATAAAA Locus tag: YintA_01002666
	YintA_01002666	-266	4.5	AATTGTGGCGTAGATCTCATAA
		-161	4.2	AAACATGATCGTTATCATAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylF
Ortholog function: Xylose ABC transporter, periplasmic xylose-binding protein XylF
Escherichia coli str. K-12 substr. MG1655	b3566	-253	4.2	AAGTGTGCGCTCGCTCGCAAAA
		-163	3.7	AAGTAAGATCTCGGTCATAAAT
Citrobacter koseri ATCC BAA-895	CKO_05022	-254	4.1	AAGTGTGCGCCGCCTCGCAAAA
		-162	3.8	AAGTACGATCTCGGTCATAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03930	-234	3.8	AAATACGATCGCCGTCATAATT
Enterobacter sp. 638	Ent638_0155	-264	3.9	AAACGTGCGCTGGCTCCCAAAA
Yersinia pestis KIM	y4056	-264	4.8	AATTGTGGTGTAGATCTCATAA
		-160	4.2	AAACATGATCGTTATCATAAAA
Serratia proteamaculans 568	Spro_0099	-259	4.4	AAATGTGCGACAGATCTCATAA
		-166	3.7	AAGCATGACCGCCATCATAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0098	-272	4.5	AAATATGACCCGCATCAAAAAA

Position: -274 Score: 4.5 Sequence: ATATGTGACTTCGTGCGCAAAA Locus tag: YintA_01002686
	YintA_01002686	-274	4.5	ATATGTGACTTCGTGCGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hutU
Ortholog function: urocanate hydratase
Citrobacter koseri ATCC BAA-895	CKO_02357	-123	3.8	AAGCGTGATTGCTGACGCAATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00795	-124	4	AAACGTGATTGCTGACGCAATA
Enterobacter sp. 638	Ent638_1263	-120	4	AAGCGTGATAGCTAACGCAATA
Erwinia amylovora ATCC 49946	EAM_1253	-121	3.8	TTTTGTGACAAAGCTGGCACAA
Yersinia pestis KIM	y4038	-261	4.9	ATATGTGATTTGGTGCGCAAAT
Serratia proteamaculans 568	Spro_0805	-196	4.8	TATTGTGATTTGACGCGCAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu3193	-203	4.7	ATTTGTGATTATAAACACAAAA

Position: -128 Score: 4.9 Sequence: TATTTTGATAGAGATCACGTTA Locus tag: YintA_01002761
	YintA_01002761	-128	4.9	TATTTTGATAGAGATCACGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fsaB
Ortholog function: fructose 6-phosphate aldolase 2
Yersinia pestis KIM	y2074	-103	4.3	TATTTTGATAAGAATAACGTTA
Serratia proteamaculans 568	Spro_2640	-88	4.7	TGATTTGATTTCGATCAAATAT

Position: -139 Score: 4.1 Sequence: TTTTATGACGCACCACACACAT Locus tag: YintA_01002829
	YintA_01002829	-139	4.1	TTTTATGACGCACCACACACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpF
Ortholog function: facilitator for glycerol uptake
Yersinia pestis KIM	y0046	-139	4	TTTCATGACGAATAACACATAT
Serratia proteamaculans 568	Spro_4797	-183	4.1	TTTTATGACGAAGCACACACAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4266	-153	4.3	TTTTTTGACGCGCAACACACAT
Edwardsiella tarda EIB202	ETAE_3441	-139	3.9	TTTTTTGACGACACACACACAT

Position: -128 Score: 3.6 Sequence: TTATGCAAATTAGGTAACAAAT Locus tag: YintA_01002836
	YintA_01002836	-128	3.6	TTATGCAAATTAGGTAACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cytR
Ortholog function: transcriptional repressor
Escherichia coli str. K-12 substr. MG1655	b3934	-128	3.9	AAATTCAATATTCATCACACTT
Citrobacter koseri ATCC BAA-895	CKO_03060	-129	3.8	AAATTAAATATCCATCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04229	-162	3.6	TCTTGCGAGCCGGATCGAAAAA
		-143	3.9	AAATTTAACAAGCATCACGTTT
Yersinia pestis KIM	y0297	-177	3.7	TTCTGCGAGCCAGTTCGAAAAA
		-135	3.6	TTATGCAAATTAGGTAACAAAT
Edwardsiella tarda EIB202	ETAE_3434	-258	4.2	AAGTGCGATCGGGATCGAAAAA
		-175	3.6	ATATGTGATCATATACTCATCG
Proteus mirabilis HI4320	PMI3218	-207	4.3	TTTTGCGAACTACCTCATAAAA
		-189	3.9	AAAAACGATTGGTATCACACTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4760	-213	4.2	ATTTGCGAGCCATATCGAATAA
		-195	4.6	ATAAATGATTTATATCACACTT

Position: -234 Score: 3.5 Sequence: TTATGTGAACGAATTAACACGG Locus tag: YintA_01002921
	YintA_01002921	-234	3.5	TTATGTGAACGAATTAACACGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: acnB
Ortholog function: Aconitate hydratase 2 (EC 4.2.1.3)
Escherichia coli str. K-12 substr. MG1655	b0118	-144	3.5	TTTTGTAAACAGATTAACACCT
Salmonella typhimurium LT2	STM0158	-157	3.9	TTTTGTAAACAGATTAACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00124	-260	3.5	TTTTGTAAACAGATTAACACCT
Yersinia pestis KIM	y0771	-276	4.3	TTATGTGAACGAATTAACACTG
Serratia proteamaculans 568	Spro_4008	-192	3.9	TTATGTGAACGAATTAACAACC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3778	-163	4.3	TTATGTGAACGAATTAACAATC
Proteus mirabilis HI4320	PMI2040	-177	4.5	TTATGTGAACGAATTAACATAG
Photorhabdus luminescens subsp. laumondii TTO1	plu3619	-261	3.6	TTCTGTGAACGAATTAACATCG

Position: -56 Score: 3.8 Sequence: ATATTCGATAGATTTCAAAATG Locus tag: YintA_01002924
	YintA_01002924	-56	3.8	ATATTCGATAGATTTCAAAATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: lpdA
Ortholog function: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Escherichia coli str. K-12 substr. MG1655	b0116	-224	3.3	AATTGTTAACAATTTTGTAAAA
Salmonella typhimurium LT2	STM0154	-153	3.5	GTTTGTGAGGTTATTAGCGAAA
Citrobacter koseri ATCC BAA-895	CKO_03256	-95	3.3	AATTGTTAACAATTTTGTAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00120	-105	3.3	AATTGTTAACAATTTTGTAAAA
Yersinia pestis KIM	y0769	-253	3.3	ATTGGTGATCTTGTTATTACTG
Serratia proteamaculans 568	Spro_4009	-246	3.6	TATGGTGATGTAATGAAAAAAG
Proteus mirabilis HI4320	PMI2044	-133	3.4	GGTTGTGAGATCTGTCATGTTA
Photorhabdus luminescens subsp. laumondii TTO1	plu3621	-131	3.9	TGTTGCGAGTTCTGTCACGTTA

Position: -340 Score: 3.4 Sequence: TATTTTGTTTTGAATATAAATT Position: -247 Score: 3.1 Sequence: AAAAGTTAAAACTCGCTCATAT Position: -163 Score: 4.2 Sequence: AAATGTGCTGGGTTTCATGATT Position: -151 Score: 3.3 Sequence: TTTCATGATTTTGGTCAAGGTC Position: -86 Score: 3.4 Sequence: TTTTGAAATTGGTATTACCAAT Position: -4 Score: 3.4 Sequence: AATTATGGCCTACAACAAAATA Locus tag: YintA_01002927
	YintA_01002927	-340	3.4	TATTTTGTTTTGAATATAAATT
		-247	3.1	AAAAGTTAAAACTCGCTCATAT
		-163	4.2	AAATGTGCTGGGTTTCATGATT
		-151	3.3	TTTCATGATTTTGGTCAAGGTC
		-86	3.4	TTTTGAAATTGGTATTACCAAT
		-4	3.4	AATTATGGCCTACAACAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhR
Ortholog function: Transcriptional repressor for pyruvate dehydrogenase complex
Escherichia coli str. K-12 substr. MG1655	b0113	-156	3.7	AAACGTTATATATGTCAAGTTG
		-131	3.8	AAATGTGCACAGTTTCATGATT
Salmonella typhimurium LT2	STM0151	-157	3.5	AAACATGATTTCTGTAAAATTG
		-120	3.2	TTTACTGATTTCAATCAAAACC
		-79	3	CTTATTAAGCTTTCTCACGAAA
		-54	3.4	TAATGGGACAGGTTCCAGATAA
Citrobacter koseri ATCC BAA-895	CKO_03260	-180	3.2	ATTTGTGCATAGTTACATCTTT
		-157	3.1	AAACGTTATTTCTGTAATCTTG
		-148	3.3	TTCTGTAATCTTGTTAAAATGT
		-120	3.2	TTTACTGATTTCAATCAAAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00117	-155	3.2	AAATGTTATTTCTGTAAGGTTG
		-118	3.2	TTTACTGATTTCAATCAAAACC
Enterobacter sp. 638	Ent638_0659	-120	3.2	TTTACTGATTTCAATCAAAACC
		-77	3.1	TATTGTATTTTCTGGCGAAAAT
		-68	3	TTTAGCGATACGAATATGAAAT
Erwinia amylovora ATCC 49946	EAM_0746	-198	3.3	TAAAGCGATCGGATTTAACAAT
Yersinia pestis KIM	y0766	-151	4.2	AAATGTGCTGGGTTTCATGATT
		-139	3.3	TTTCATGATTTCGGTCAAGGTC
		-74	3.4	TTTTGAAATTGGTATTACCAAT
Serratia proteamaculans 568	Spro_4012	-132	3.1	AAATGTGCGGGTAACCTGATTT
		-56	3.4	TTTTGAAATTGGTATTACCAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3790	-120	3.7	ATTGGTGATTTAGCTCAAGGTC
		-55	3.4	TTTTGAAATTGGTATTACCAAT
Edwardsiella tarda EIB202	ETAE_0658	-143	3.2	TTTCATGATTTACATCAATAGT
Proteus mirabilis HI4320	PMI2047	-218	3.1	TGTTTTTAATCTTTTCTAATAA
		-199	4.4	TAATGCGATCTAGTTATCAAAT
		-181	4.2	AAATTTGATGAATTTATCAAAT
		-158	3	ATTTGTTAAAATTTGCAGGTTT
		-138	3.9	TTTTATGATTTCGCTCAACAAC
		-95	3.1	CTTTGTTACTTTATTATCCATT
		-89	3.1	TACTTTATTATCCATTACATTA

Position: -214 Score: 3.9 Sequence: GAAAGTGAAACAGCTCACAGTT Locus tag: YintA_01002978
	YintA_01002978	-214	3.9	GAAAGTGAAACAGCTCACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaS
Ortholog function: L-rhamnose operon regulatory protein RhaS
Escherichia coli str. K-12 substr. MG1655	b3905	-182	4.5	GAACGTGATGATGTTCACAATT
		-147	4.5	TGATGTGATGCTCACCGCATTT
Salmonella typhimurium LT2	STM4048	-182	4.3	GAACGTGATAGCGTTCACAGTT
		-147	4	CGGTGTGATGTCGTCCGCATTT
		-62	3.8	TAAGGTGAGGCCGATAACCCTT
Citrobacter koseri ATCC BAA-895	CKO_03099	-194	4.5	GAACGTGATAGCGTTCACAATT
		-34	4.3	ATTTCTGACATGTTTCTCATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04214	-204	3.8	GACCGTGAGGGACATCACAGTT
Enterobacter sp. 638	Ent638_4066	-194	4.2	GAACGTGAGGGAGTTCACAGTT
Yersinia pestis KIM	y0590	-214	3.9	GAAAGTGAAACAGCTCACAGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0441	-144	3.9	CGGTGTGATCCTTGCCACACTT

Position: -174 Score: 4.2 Sequence: AACTGTGAGCTGTTTCACTTTC Locus tag: YintA_01002980
	YintA_01002980	-174	4.2	AACTGTGAGCTGTTTCACTTTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaB
Ortholog function: rhamnulokinase
Escherichia coli str. K-12 substr. MG1655	b3904	-162	3.8	AAATGCGGTGAGCATCACATCA
		-127	4.4	AATTGTGAACATCATCACGTTC
Salmonella typhimurium LT2	STM4047	-247	3.9	AAGGGTTATCGGCCTCACCTTA
		-127	4.1	AACTGTGAACGCTATCACGTTC
Citrobacter koseri ATCC BAA-895	CKO_03100	-182	4.5	AATTGTGAACGCTATCACGTTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04213	-128	4.2	AACTGTGATGTCCCTCACGGTC
Enterobacter sp. 638	Ent638_4067	-129	4.2	AACTGTGAACTCCCTCACGTTC
Yersinia pestis KIM	y0587	-234	4.2	AACTGTGAGCTGTTTCACTTTC

Position: -27 Score: 3.6 Sequence: AAATGTTAGCAAAAACAGATTA Locus tag: YintA_01002995
	YintA_01002995	-27	3.6	AAATGTTAGCAAAAACAGATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: deoB
Ortholog function: phosphopentomutase
Escherichia coli str. K-12 substr. MG1655	b4383	-149	4.6	TTATTTGAACCAGATCGCATTA
		-96	4.5	AATTGTGATGTGTATCGAAGTG
Salmonella typhimurium LT2	STM4569	-133	4.9	TAATTTGATTCAGATCTCATTA
		-80	4.2	AACTGTGATGTATATCGAAGTG
Citrobacter koseri ATCC BAA-895	CKO_03408	-134	4.2	TTATTTGAAGTGGATCTCGTTA
		-81	4.2	AACTGTGATGTATATCGAAGTG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04839	-158	5.2	ATTTGTGATTTTAATCACGTTA
		-105	3.7	AACTGTGATGAATGTCGAAGTG
Enterobacter sp. 638	Ent638_0543	-151	4.6	AAATTTGAAGTGGATCTCATTA
		-98	3.7	AACTGTGATGAATGTCGAAGTG
Erwinia amylovora ATCC 49946	EAM_0617	-233	4.6	TGATGTGATAATTCTAACATTA
Yersinia pestis KIM	y3741	-169	3.7	TGCGGTGAGATGGATCTCAATT
Serratia proteamaculans 568	Spro_0662	-262	4.6	ATTTGTGAACGATATCGCGTTA
		-240	5.5	TTTTGTGATGGTCTTCACATAT
		-188	3.8	TAGTGTGACTGTGAACGCGAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0729	-282	4.4	AAGTGTGAATGAATGCACAAAA
Proteus mirabilis HI4320	PMI2414	-267	4.4	ATATGTGAGTTACTTCGCAACT
		-135	5.6	TTTTGTGATTCTGATCACAATT
		-83	4.5	TATTGTGACAGAAAGCACATCT

Position: -243 Score: 3.7 Sequence: TGCGGTGAGATGGATCTCAATT Locus tag: YintA_01002997
	YintA_01002997	-243	3.7	TGCGGTGAGATGGATCTCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: deoC
Ortholog function: 2-deoxyribose-5-phosphate aldolase
Escherichia coli str. K-12 substr. MG1655	b4381	-149	4.6	TTATTTGAACCAGATCGCATTA
		-96	4.5	AATTGTGATGTGTATCGAAGTG
Salmonella typhimurium LT2	STM4567	-133	4.9	TAATTTGATTCAGATCTCATTA
		-80	4.2	AACTGTGATGTATATCGAAGTG
Citrobacter koseri ATCC BAA-895	CKO_03410	-134	4.2	TTATTTGAAGTGGATCTCGTTA
		-81	4.2	AACTGTGATGTATATCGAAGTG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04837	-158	5.2	ATTTGTGATTTTAATCACGTTA
		-105	3.7	AACTGTGATGAATGTCGAAGTG
Enterobacter sp. 638	Ent638_0541	-151	4.6	AAATTTGAAGTGGATCTCATTA
		-98	3.7	AACTGTGATGAATGTCGAAGTG
Erwinia amylovora ATCC 49946	EAM_0615	-233	4.6	TGATGTGATAATTCTAACATTA
Yersinia pestis KIM	y3743	-169	3.7	TGCGGTGAGATGGATCTCAATT
Serratia proteamaculans 568	Spro_0660	-262	4.6	ATTTGTGAACGATATCGCGTTA
		-240	5.5	TTTTGTGATGGTCTTCACATAT
		-188	3.8	TAGTGTGACTGTGAACGCGAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0727	-282	4.4	AAGTGTGAATGAATGCACAAAA
Proteus mirabilis HI4320	PMI2416	-267	4.4	ATATGTGAGTTACTTCGCAACT
		-135	5.6	TTTTGTGATTCTGATCACAATT
		-83	4.5	TATTGTGACAGAAAGCACATCT

Position: -156 Score: 5.2 Sequence: TAATGTGACTTTTGTCACATTT Locus tag: YintA_01002999
	YintA_01002999	-156	5.2	TAATGTGACTTTTGTCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nupC2
Ortholog function: Na+ dependent nucleoside transporter
Yersinia pestis KIM	y3744	-154	3.8	CTTTGTCAATAACCTCACATAT
		-115	5.5	TAATGTGATTATGATCACATTT
Serratia proteamaculans 568	Spro_0659	-181	3.9	AACCGTGACGCATGTCACGTAC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0473	-182	4.9	AATTGTGACGAAGATCACTTTT
Edwardsiella tarda EIB202	ETAE_0482	-232	4.9	TGATGTGATATGCATCACTTTT
Proteus mirabilis HI4320	PMI2418	-180	5.2	TAGTGTGATTTAGATCTCATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu0519	-178	5.5	TTGTGTGATTCACATCACATTT

Position: -261 Score: 3.7 Sequence: AAATTTGATACTCATCAGGTCA Locus tag: YintA_01003034
	YintA_01003034	-261	3.7	AAATTTGATACTCATCAGGTCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: zraS
Ortholog function: Sensory histidine kinase in two-component regulatory system with ZraR
Escherichia coli str. K-12 substr. MG1655	b4003	-255	3.6	TTTCGTGTTCCGTTTCATGGTT

Position: -223 Score: 4.5 Sequence: AACTGTGAGAAGAATCACAGAT Locus tag: YintA_01003055
	YintA_01003055	-223	4.5	AACTGTGAGAAGAATCACAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aspA
Ortholog function: aspartate ammonia-lyase
Escherichia coli str. K-12 substr. MG1655	b4139	-206	4.5	AGCGGTGATCTATTTCACAAAT
		-156	4.2	TAAAGTGATCCAGATTACGGTA
Salmonella typhimurium LT2	STM4326	-209	4.2	AGCGGTGACCTATTTCACAAAA
		-159	4.2	TTAAGTGATCCAGATTACGGTA
Citrobacter koseri ATCC BAA-895	CKO_03696	-54	4.2	AGCGGTGACCTATTTCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04529	-204	3.9	AGCGGTGACCCATTTCACAGAT
		-154	3.8	ATAAGTGATCAAGCTTACTGAT
Enterobacter sp. 638	Ent638_0326	-205	4.1	AGCGGTGATTCATTTCACAGAT
Erwinia amylovora ATCC 49946	EAM_0416	-228	4.2	CAATGTGACCTGGAACAGATAT
Yersinia pestis KIM	y0606	-224	4.6	AAGTGTGAGAGCAATCACAGAT
Serratia proteamaculans 568	Spro_0406	-205	4.7	AAACGTGAATGAGATCACAGAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0621	-272	4	ACTCGTGACTACAATCACAGTT
Edwardsiella tarda EIB202	ETAE_0311	-197	4.4	ATCTGTGAGTATTATCACAGAT
Proteus mirabilis HI4320	PMI2546	-206	4.1	ATCCATGAGATAGATCACAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu4137	-274	3.8	AGATATAATTGGGGTCACAGTT
		-211	5.6	AATTGTGATAAATATCACATAT

Position: -240 Score: 4.8 Sequence: ATCTGTGATTCTTCTCACAGTT Locus tag: YintA_01003056
	YintA_01003056	-240	4.8	ATCTGTGATTCTTCTCACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fxsA
Ortholog function: suppressor of F plamsid exlusion of phage T7
Escherichia coli str. K-12 substr. MG1655	b4140	-202	4.1	TACCGTAATCTGGATCACTTTA
		-152	4.3	ATTTGTGAAATAGATCACCGCT
Salmonella typhimurium LT2	STM4327	-203	4.1	TACCGTAATCTGGATCACTTAA
		-153	4.1	TTTTGTGAAATAGGTCACCGCT
Citrobacter koseri ATCC BAA-895	CKO_03695	-156	4.1	TTTTGTGAAATAGGTCACCGCT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04530	-140	3.7	ATCTGTGAAATGGGTCACCGCT
Enterobacter sp. 638	Ent638_0327	-151	3.8	ATCTGTGAAATGAATCACCGCT
Erwinia amylovora ATCC 49946	EAM_0417	-161	3.9	ATATCTGTTCCAGGTCACATTG
Yersinia pestis KIM	y0607	-245	4.8	ATCTGTGATTGCTCTCACACTT
Serratia proteamaculans 568	Spro_0407	-117	4.9	TTCTGTGATCTCATTCACGTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0623	-245	3.7	AACTGTGATTGTAGTCACGAGT
		-185	3.6	AAATGTGCAAAGGCGCACCCAT
Edwardsiella tarda EIB202	ETAE_0312	-189	4.6	ATCTGTGATAATACTCACAGAT
Proteus mirabilis HI4320	PMI2545	-188	4.7	TTTTGTGATCTATCTCATGGAT
Photorhabdus luminescens subsp. laumondii TTO1	plu4136	-188	5.6	ATATGTGATATTTATCACAATT

Position: -326 Score: 4.5 Sequence: ATACGTGATCTGGCTTGCAAAT Position: -263 Score: 4.1 Sequence: CAGTGTTAACTGGGTCACAATA Locus tag: YintA_01003083
	YintA_01003083	-326	4.5	ATACGTGATCTGGCTTGCAAAT
		-263	4.1	CAGTGTTAACTGGGTCACAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: malE
Ortholog function: maltose ABC transporter periplasmic protein
Yersinia pestis KIM	y0028	-286	4.2	TATTGTGCCTAACACCACAAAA
		-257	4	CAGTGTTAACTGAGTCACAATA
Serratia proteamaculans 568	Spro_4472	-199	4	ATCTGTGATCTGCCTGGCAAAA
		-165	3.6	TTTTGTGTCTGACGCCACAGAA
		-136	4.4	CAATGTTAACTGGATCACACTA

Position: -204 Score: 3.7 Sequence: GATTGTGATAAATCACTCACTA Locus tag: YintA_01003193
	YintA_01003193	-204	3.7	GATTGTGATAAATCACTCACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: maeB
Ortholog function: malic enzyme
Escherichia coli str. K-12 substr. MG1655	b2463	-257	3.9	ATGAGTGCGTTAATTCACACTT
Salmonella typhimurium LT2	STM2472	-240	3.8	ATGAGTGTGTTGATTCACACTT
Enterobacter sp. 638	Ent638_2958	-231	4.1	ATACATGACGTACTTAACAAAA
Yersinia pestis KIM	y1449	-92	3.7	GATTGTGATAAATCACTCACTA
Serratia proteamaculans 568	Spro_3472	-209	3.6	CTTTGTTATCAAACTCACTATC
		-90	4.1	GTTTGTGACGTTTCTCTCACTA
Photorhabdus luminescens subsp. laumondii TTO1	plu2719	-74	4	TGTTATGATTTGACACACAGTA

Position: -211 Score: 5.1 Sequence: TAATGTGATGAATATCTCAATT Position: -161 Score: 4.6 Sequence: TTTTGTGATAGCGCTATCATTT Locus tag: YintA_01003238
	YintA_01003238	-211	5.1	TAATGTGATGAATATCTCAATT
		-161	4.6	TTTTGTGATAGCGCTATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: CKO_00488
Ortholog function: LacI-family transcriptional regulator
Salmonella typhimurium LT2	STM2345	-192	4	AGCTGCGATCGTTATCACAAAG
		-143	4.6	AATTGTGATAGCGCTATCAAAT
Citrobacter koseri ATCC BAA-895	CKO_00488	-192	4.6	ATCTGTGATCATATTCACAAAG
		-143	4.5	ATATGTGATAGCGCTATCAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01748	-155	4.2	AACTGTGATACACCTCCCAAAG
		-53	3.6	AGTTATAATGCGATTCGCAGAT
Enterobacter sp. 638	Ent638_2847	-178	4.1	AGCTGCGATCAAGATCACAAAG
		-129	4.6	AATTGTGATAGCGCTATCAAAT
Yersinia pestis KIM	y1619	-208	5.4	TAATGTGATCTGGATCTCAATT
		-158	4.6	ATTTGTGATAGCGCTATCATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3772	-246	4.5	TAATGTGATTAACATCCAAAAA
		-196	4	AACTGTGACCGGCTTAGCACAA
Edwardsiella tarda EIB202	ETAE_3025	-210	4.3	TTTCGTGATAGCGCTATCATTT
Proteus mirabilis HI4320	PMI1778	-139	4.2	AATTGTGATAGCGCTATTATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu1978	-195	3.8	GCTAGTGATATTAGTCACAAAT
		-145	4.7	AATTGTGATAGCGCTATCATTT

Position: -155 Score: 4.2 Sequence: ATGTGTGAACCAGATCATTAAT Locus tag: YintA_01003267
	YintA_01003267	-155	4.2	ATGTGTGAACCAGATCATTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nhaA
Ortholog function: Na+/H+ antiporter NhaA type
Salmonella typhimurium LT2	STM0039	-97	3.7	AAACGAGCTATTCATCATATAT
Yersinia pestis KIM	y3704	-147	4.1	AAATGTGATATGCGTTATCAAT
Serratia proteamaculans 568	Spro_0694	-120	4.7	AAGTGTGATATAAATCGCTTAT
Proteus mirabilis HI4320	PMI0011	-110	3.9	ATAAGCGATTGAGATCGAAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu0587	-122	4.4	TATTGAGATGTAGATCATCAAT

Position: -137 Score: 4.7 Sequence: AAGTGTGACTTTACTCACCATT Locus tag: YintA_01003325
	YintA_01003325	-137	4.7	AAGTGTGACTTTACTCACCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fdrA
Ortholog function: membrane protein FdrA
Escherichia coli str. K-12 substr. MG1655	b0518	-213	3.8	TTATTTGATAATCCGCTCACTT
		-105	4.7	CTGTGTGATATTCATCACCTTA
Salmonella typhimurium LT2	STM0529	-120	4.4	TGATGTGACGTTAATCACTCTA
Proteus mirabilis HI4320	PMI2202	-191	4.2	AACTGTGACTTTAATCACTCTA

Position: -298 Score: 4 Sequence: ATTTGCGAGCATGATCACGGTA Locus tag: YintA_01003343
	YintA_01003343	-298	4	ATTTGCGAGCATGATCACGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdaC
Ortholog function: Serine transporter
Escherichia coli str. K-12 substr. MG1655	b2796	-179	4.2	ATTTGAGATCAAGATCACTGAT
Salmonella typhimurium LT2	STM2970	-176	4.2	ATTTGAGATCGGGATCACTGAT
Citrobacter koseri ATCC BAA-895	CKO_04152	-176	4.1	ATTTGGGATCGCGATCACTGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03139	-158	4.2	ATTTGAGATCGCGATCACTGAT
Enterobacter sp. 638	Ent638_3249	-176	4.1	ATTTGGGATCAGGATCACTGAT
Erwinia amylovora ATCC 49946	EAM_1294	-300	3.6	ATTTGTTAAAAATCGCAAAAAA
		-180	3.9	AAATGTGATTCCGATCACCGGC
Yersinia pestis KIM	y2862	-286	4.3	AATTGAGATCACGATCACGGTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3158	-195	3.7	TTCTGTGATCGCCTCAATATTA
Proteus mirabilis HI4320	PMI0672	-283	4.3	ATTTGAGATGGTGATCACGGTA

Position: -126 Score: 4.3 Sequence: ACTTTTGACTGACATCACAAAA Locus tag: YintA_01003364
	YintA_01003364	-126	4.3	ACTTTTGACTGACATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araB
Ortholog function: L-ribulokinase
Erwinia amylovora ATCC 49946	EAM_1697	-131	4.1	ACATATGAAGGCCATCACATAA
Yersinia pestis KIM	y2095	-146	4.3	ACTTTTGACTGACATCACAAAA
Serratia proteamaculans 568	Spro_2244	-132	3.9	ACTTATGACAGCCGTCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2274	-133	3.9	ACCTTTGACCAGCTTCACAAAA

Position: -294 Score: 4.3 Sequence: TTTTGTGATGTCAGTCAAAAGT Locus tag: YintA_01003365
	YintA_01003365	-294	4.3	TTTTGTGATGTCAGTCAAAAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araF
Ortholog function: L-arabinose-binding periplasmic protein
Escherichia coli str. K-12 substr. MG1655	b1901	-163	4.2	CGATGTGATATTGCTCTCCTAT
Citrobacter koseri ATCC BAA-895	CKO_01050	-164	4	CGGTGTGATGCCGCTCTCCTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02396	-161	4	CGATGTGATAATGCTCTCGTAT
		-72	3.6	TGTTTTGATGACGATTAAATTG
Enterobacter sp. 638	Ent638_2476	-162	3.7	CGGTGTGATGGCGCTCTCTTAT
Erwinia amylovora ATCC 49946	EAM_1698	-251	4.3	TTATGTGATGGCCTTCATATGT
Yersinia pestis KIM	y2096	-283	4.3	TTTTGTGATGTCAGTCAAAAGT
Serratia proteamaculans 568	Spro_2245	-251	3.8	TTTTGTGACGGCTGTCATAAGT

Position: -255 Score: 3.5 Sequence: AATTATGAATAAAAATACATTA Locus tag: YintA_01003393
	YintA_01003393	-255	3.5	AATTATGAATAAAAATACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Salmonella typhimurium LT2	STM4121	-44	3.5	AATTATGAATAAAAATACATTA
Citrobacter koseri ATCC BAA-895	CKO_03036	-110	4	ATTTGTGAATAAAAATACATTA
Enterobacter sp. 638	Ent638_4028	-44	3.8	AAATGTGAATAAAAATACACTA
Yersinia pestis KIM	y0310	-43	3.7	TTTATTGACATAAATAAAAATA
Serratia proteamaculans 568	Spro_4781	-167	4	TATTGTGAATAAAAATACAATA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0192	-159	3.5	TATTTTGAATAAAAATACAATA
Edwardsiella tarda EIB202	ETAE_3482	-160	3.4	AATTATGAATAAAAATACAATA
Proteus mirabilis HI4320	PMI3237	-57	3.6	TTTTTTGAATAAAAATACATTA
Photorhabdus luminescens subsp. laumondii TTO1	plu4744	-59	3.6	TTTTTTGAATAAAAATACATTA

Position: -71 Score: 3.9 Sequence: TAATGTATTTTTATTCATAATT Locus tag: YintA_01003394
	YintA_01003394	-71	3.9	TAATGTATTTTTATTCATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argE
Ortholog function: acetylornithine deacetylase
Escherichia coli str. K-12 substr. MG1655	b3957	-66	3.7	TAGTGTATTTTTATTCATAAAT
Salmonella typhimurium LT2	STM4120	-66	3.9	TAATGTATTTTTATTCATAATT
Citrobacter koseri ATCC BAA-895	CKO_03037	-27	4.3	TAATGTATTTTTATTCACAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04246	-27	4	TATTGTATTTTTATTCAAAATA
Enterobacter sp. 638	Ent638_4029	-66	4.2	TAGTGTATTTTTATTCACATTT
Erwinia amylovora ATCC 49946	EAM_0137	-66	3.8	TATTGTATTTTTATTCACTATT
Yersinia pestis KIM	y0309	-223	3.6	TATTTTTATTTATGTCAATAAA
Serratia proteamaculans 568	Spro_4782	-71	4.3	TATTGTATTTTTATTCACAATA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0191	-65	4	TATTGTATTTTTATTCAAAATA
Edwardsiella tarda EIB202	ETAE_3483	-65	3.9	TATTGTATTTTTATTCATAATT
Proteus mirabilis HI4320	PMI3236	-65	3.9	TAATGTATTTTTATTCAAAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu4745	-65	3.9	TAATGTATTTTTATTCAAAAAA

Position: -55 Score: 4.3 Sequence: TTTTGTGAGGCGGATCATTAAA Locus tag: YintA_01003440
	YintA_01003440	-55	4.3	TTTTGTGAGGCGGATCATTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uraA1
Ortholog function: Xanthine permease
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04013	-143	3.7	TGATGCGATTTAGCATACAAAA
Enterobacter sp. 638	Ent638_0073	-169	3.7	CAAAATGATTCTTCGCACATAT
Yersinia pestis KIM	y0107	-60	4	AAATGTGAGTTAGCAAAAAAAT
Edwardsiella tarda EIB202	ETAE_0025	-56	3.7	TTTTGTGGCGCAGATCATTAAA
Proteus mirabilis HI4320	PMI2868	-54	3.7	TTTTGTGGCGCAGATCATTAAA

Position: -318 Score: 3.7 Sequence: AATTTTGACAGGCATTAAGTAA Position: -240 Score: 4.2 Sequence: AAATGGGATCTAAATCTCAAAC Locus tag: YintA_01003494
	YintA_01003494	-318	3.7	AATTTTGACAGGCATTAAGTAA
		-240	4.2	AAATGGGATCTAAATCTCAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yejG
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b2181	-158	3.7	AAACGTGACCACGCCCGCAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02614	-204	3.8	AAAGTTGTTTTGGATCACAGAA
Erwinia amylovora ATCC 49946	EAM_2233	-177	3.6	AAATGAGCATTACTTCTCAAAA
Yersinia pestis KIM	y2914	-238	4.4	AAATGGGATCTGAATCCCAAAT
Serratia proteamaculans 568	Spro_3250	-214	4.2	AAATGCGAGCTGAGTCGCAAAA
		-121	4.1	GCTTGTGATGTTTTTTACATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2740	-178	4	ATTCGTGATCAGTTTGGCATTA
		-101	3.8	TGTTGTTTTTTTGTTCACGAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu2865	-185	4.1	AAATGAGAGATTGATCTCACTT
		-183	3.6	ATGAGAGATTGATCTCACTTTT
		-141	3.8	TAATGTAATACTATAAACACAA

Position: -128 Score: 4.1 Sequence: TATTGTGCGTTCTAGCACAGTT Locus tag: YintA_01003500
	YintA_01003500	-128	4.1	TATTGTGCGTTCTAGCACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: spr
Ortholog function: predicted peptidase, outer membrane lipoprotein
Escherichia coli str. K-12 substr. MG1655	b2175	-130	4.1	TTTTGTGCGTTAGTCCACAGAT
Salmonella typhimurium LT2	STM2214	-128	3.7	ATTTGTGCGTTCCGCCACAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02608	-292	3.6	TAGGGTAATCTCGTTCTCGTTT
		-234	4.2	AATTGTGCGTGACTGCACAAAT
Enterobacter sp. 638	Ent638_2771	-250	3.6	AATCGCTTTGTCTATCACAATT
Yersinia pestis KIM	y2908	-128	3.7	GAATGTGCGTTCATGCACATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2735	-159	3.9	TAATGTGCATTCTGGCACACTT
Edwardsiella tarda EIB202	ETAE_2298	-131	4.4	AAGTGTGTTCTGCTGCACAATT
Proteus mirabilis HI4320	PMI0831	-129	4.2	TTACGTGCTTTAGAGCACGTTT

Position: -146 Score: 4.3 Sequence: ATTCGTGAGGTGGATCAACCAA Locus tag: YintA_01003506
	YintA_01003506	-146	4.3	ATTCGTGAGGTGGATCAACCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxuA
Ortholog function: Mannonate dehydratase (EC 4.2.1.8)
Escherichia coli str. K-12 substr. MG1655	b4322	-271	3.8	TGTTGCGATGAATGTCACATCC
		-186	4.5	TCTTGTGATGTGGTTAACCAAT
Salmonella typhimurium LT2	STM3135	-205	4.3	AAAATTGACACAGATCAAATAA
		-155	4.6	ATTTGTGATTTGGTTAGCCAAT
Citrobacter koseri ATCC BAA-895	CKO_00609	-115	3.9	GATTGTGAGCTGGATCAATCAA
Enterobacter sp. 638	Ent638_2767	-116	3.9	TTCTGTGAGTTGGATCAATCAA
Serratia proteamaculans 568	Spro_3238	-167	3.9	AACCGTGAAGTGGATCAACCAA
		-48	4.1	AATCTTGATCACCACCACAATA
Edwardsiella tarda EIB202	ETAE_2289	-188	4.2	AATCGTGAGGCGGATCAACCAA

Position: -131 Score: 5 Sequence: TAAAGTGATCTTCATCACAGTT Locus tag: YintA_01003552
	YintA_01003552	-131	5	TAAAGTGATCTTCATCACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: idnO
Ortholog function: 5-keto-D-gluconate-5-reductase
Escherichia coli str. K-12 substr. MG1655	b4266	-81	5.1	TGACGTGATCTTCATCACAAAT
Salmonella typhimurium LT2	STM4483	-81	4.3	CAGCGTGACATAAGTCACAAAT
Citrobacter koseri ATCC BAA-895	CKO_02793	-140	5.4	TAATGTGACATGTTTCACAAAT

Position: -272 Score: 4.8 Sequence: AACTGTGATGAAGATCACTTTA Locus tag: YintA_01003553
	YintA_01003553	-272	4.8	AACTGTGATGAAGATCACTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: idnR
Ortholog function: DNA-binding transcriptional repressor, 5-gluconate-binding
Escherichia coli str. K-12 substr. MG1655	b4264	-81	5.1	TGACGTGATCTTCATCACAAAT
Salmonella typhimurium LT2	STM4481	-81	4.3	CAGCGTGACATAAGTCACAAAT
Citrobacter koseri ATCC BAA-895	CKO_02791	-140	5.4	TAATGTGACATGTTTCACAAAT

Position: -264 Score: 3.9 Sequence: TGGTGTGACGTTGCTCATTATT Locus tag: YintA_01003603
	YintA_01003603	-264	3.9	TGGTGTGACGTTGCTCATTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytfQ
Ortholog function: Putative sugar ABC transport system, periplasmic binding protein YtfQ precursor
Escherichia coli str. K-12 substr. MG1655	b4227	-98	3.7	AAGTGTGATGTAACGCAATCTG
Citrobacter koseri ATCC BAA-895	CKO_03603	-130	3.7	AGTTGTGATTAACCTTTTATTT
Yersinia pestis KIM	y0328	-229	3.8	TGGTGTGACGCCGCTCATTATT
Serratia proteamaculans 568	Spro_4768	-163	4.3	TGATGTGATGCCGCTCATTATT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4236	-68	3.7	TATTGTTAGCCTACTTACCATA

Position: -278 Score: 3.9 Sequence: TTCTGTGAGCCGCTACACGATA Position: -200 Score: 3.8 Sequence: TTTTGCGTGCCATATCGCAATT Locus tag: YintA_01003609
	YintA_01003609	-278	3.9	TTCTGTGAGCCGCTACACGATA
		-200	3.8	TTTTGCGTGCCATATCGCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yifB
Ortholog function: magnesium chelatase family protein
Escherichia coli str. K-12 substr. MG1655	b3765	-266	4.2	TTTTATGATGCGTTTAATAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04266	-226	4.1	TTATATGAAAAAAATCAAAAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4230	-144	3.9	AATTGCGACCCATTACGCACAA
Edwardsiella tarda EIB202	ETAE_0086	-128	3.7	TATTGTTAATGTGTTAATAATT
Photorhabdus luminescens subsp. laumondii TTO1	plu4686	-268	3.7	TAATTTAATTTAAATTTCAAAA

Position: -228 Score: 3.9 Sequence: AGATGTGAGCCATATAACCTCT Locus tag: YintA_01003667
	YintA_01003667	-228	3.9	AGATGTGAGCCATATAACCTCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dppB
Ortholog function: dipeptide ABC transporter, permease protein
Citrobacter koseri ATCC BAA-895	CKO_04993	-121	3.8	TTATGTGAACGGAATCCCCATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03898	-62	4	ATATGCAAACAACATCACAATT
Yersinia pestis KIM	y3826	-211	3.9	AGATGTGAGCCATATAACCTCT
Serratia proteamaculans 568	Spro_0139	-271	3.8	TTGTTTGCTGTTTCTCACAGTC
Photorhabdus luminescens subsp. laumondii TTO1	plu0301	-223	3.7	AAATGTGCGCATTGTCATGTTT

Position: -207 Score: 4.1 Sequence: AAAGTTGAGTGACATCACAAAA Locus tag: YintA_01003678
	YintA_01003678	-207	4.1	AAAGTTGAGTGACATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxaC
Ortholog function: Uronate isomerase (EC 5.3.1.12)
Yersinia pestis KIM	y3600	-229	4.1	AAAGTTGAGTGACATCACAAAA
		-109	3.6	TTTTGCGATCAATATCTATAAA
Serratia proteamaculans 568	Spro_4321	-231	4.1	AAAGTTGAGTGATATCACAAAA

Position: -245 Score: 3.6 Sequence: AATAGAGACAGATCTCAGATTT Locus tag: YintA_01003735
	YintA_01003735	-245	3.6	AATAGAGACAGATCTCAGATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuB
Ortholog function: C4-dicarboxylate transporter DcuB
Escherichia coli str. K-12 substr. MG1655	b4123	-53	3.5	GACTGTGATCTATTCAGCAAAA
Salmonella typhimurium LT2	STM4301	-53	3.5	GGCTGTGATCCATTTATCAAAA
Citrobacter koseri ATCC BAA-895	CKO_03748	-52	3.9	GACTGTGATCTATTTATCAAAA
Enterobacter sp. 638	Ent638_2479	-81	3.3	AAATCTGATCTGGCTCCCAGCC
Serratia proteamaculans 568	Spro_3863	-77	3.6	GTTTGTGATCGCTATCCCTCAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1533	-296	3.5	TATTGCGAGCGAGATCTTTTAT
		-247	3.5	TTAATAGATTTAGATCAAGAAA
Edwardsiella tarda EIB202	ETAE_2844	-194	3.6	ATACTTTATTCAGATCAATTTT
Proteus mirabilis HI4320	PMI0389	-138	3.3	AACTATAACAACGATCAAAAAA

Position: -145 Score: 4.5 Sequence: CAATGTGATCAAGTTCTAATAA Locus tag: YintA_01003763
	YintA_01003763	-145	4.5	CAATGTGATCAAGTTCTAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nudE
Ortholog function: ADP compounds hydrolase NudE (EC 3.6.1.-)
Escherichia coli str. K-12 substr. MG1655	b3397	-53	3.7	AAGCGTGTCCGATATCGCACAA
Citrobacter koseri ATCC BAA-895	CKO_04820	-54	4.1	AACCGTGCTGTATATCGCACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03768	-54	4	AAGCGTGTTGCGTATCGCACAA
Enterobacter sp. 638	Ent638_3810	-55	3.6	AACCGTGCGTCATATCGCACAA
Yersinia pestis KIM	y3923	-247	4.5	CAATGTGATCAAGTTCTAATAT
Serratia proteamaculans 568	Spro_4612	-135	4.4	CAATGTGATCAAGATCGGATTT
Edwardsiella tarda EIB202	ETAE_3268	-116	3.6	AAATATGAGCATCTGCGCACAA

Position: -130 Score: 3.9 Sequence: ATCCGTGTTCTATCTCTCATAA Position: -80 Score: 3.8 Sequence: ATATTTGATAGCTATCGCTGTT Locus tag: YintA_01003768
	YintA_01003768	-130	3.9	ATCCGTGTTCTATCTCTCATAA
		-80	3.8	ATATTTGATAGCTATCGCTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pck
Ortholog function: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Escherichia coli str. K-12 substr. MG1655	b3403	-240	4.2	GAATGCGATTCCACTCACAATA
		-137	4	TTTCGTGACAGGAATCACGGAG
Salmonella typhimurium LT2	STM3500	-241	4	GAATGCGATTACAGTCACATTA
		-107	3.9	AATCGTGATTTTGTCCAGATAC
Citrobacter koseri ATCC BAA-895	CKO_04825	-107	3.9	AATCGTGATTTTGTCCAGATAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03773	-242	3.7	GAAAGCGATTACATTCACATTT
		-138	3.7	CTTCGTGACAGGAGTCACCGTT
Enterobacter sp. 638	Ent638_3816	-241	4.1	GTATGCGATTACATTCACATTA
Yersinia pestis KIM	y3918	-130	4.2	ATTCGTGTTCCATCTCTCATAA
		-80	3.8	ATATTTGATAGCTATCGCTGTT
Serratia proteamaculans 568	Spro_4617	-80	4.1	ATATTTGATACCTATCGCGGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4106	-81	4	TTTTATGATTGCTATCGCGGTT
Edwardsiella tarda EIB202	ETAE_3277	-82	3.9	TTTTTTGATGACTATCTCGGTT
Proteus mirabilis HI4320	PMI3015	-131	4	ATTTGTGCATTAGTTCTCGTTA
Photorhabdus luminescens subsp. laumondii TTO1	plu0100	-86	3.8	TTTTTTGATAACTATCGCTGTT

Position: -152 Score: 5.3 Sequence: TTATGTGACTTTAATCACATAA Position: -129 Score: 3.9 Sequence: AAATGTAATGATAACAACAATA Locus tag: YintA_01003782
	YintA_01003782	-152	5.3	TTATGTGACTTTAATCACATAA
		-129	3.9	AAATGTAATGATAACAACAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycdZ
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b1036	-52	4	AAATGTGTGCTCGATCTCATTC
		-50	3.7	ATGTGTGCTCGATCTCATTCAT
Citrobacter koseri ATCC BAA-895	CKO_02033	-40	3.9	AAATGTGTGCGTGATCTCATTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01059	-52	4.1	TACTGTGTTTTAGATCGCATTC
Serratia proteamaculans 568	Spro_3290	-125	4.2	TTTTGTGACAAATTCCACATCT
		-96	3.6	TATCTTGTTTCTCATTACATAT
		-73	4.6	TTATGTGAAATACATCACATGA
Edwardsiella tarda EIB202	ETAE_2360	-124	4.3	AAGTGTGATTGATGTCACTTTG
		-72	3.6	CGGTGTGATGTCCATCAATGAA
Proteus mirabilis HI4320	PMI3124	-240	3.7	ATTAATAATATATATCAAACAA

Position: -228 Score: 3.3 Sequence: TTATGTTAACAATATGATAAAT Locus tag: YintA_01003797
	YintA_01003797	-228	3.3	TTATGTTAACAATATGATAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceB
Ortholog function: malate synthase A
Escherichia coli str. K-12 substr. MG1655	b4014	-117	3.6	AATTGTTTTTGATTTTGCATTT
Salmonella typhimurium LT2	STM4183	-168	3.3	TTAATTTATATTGTTATCAATA
Citrobacter koseri ATCC BAA-895	CKO_03906	-166	3.3	TATTTTTATTGTTATCAATAAG
Yersinia pestis KIM	y0015	-254	3.3	ATGAGTTATAGCCATTAAAAAT
Serratia proteamaculans 568	Spro_4503	-228	3.5	TGTTGTTATGTTTATTAACCAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3991	-185	3.3	TTTTTTAATTTTAATCTTCATT
Proteus mirabilis HI4320	PMI2764	-68	3.7	ATTTTTGATTTTTGTAAAAACT
Photorhabdus luminescens subsp. laumondii TTO1	plu4396	-65	3.8	GTTTTTGATTTATTTTAAATAT

Position: -178 Score: 4.1 Sequence: AAATGTGCGGGCTGTCAAAAAT Locus tag: YintA_01003827
	YintA_01003827	-178	4.1	AAATGTGCGGGCTGTCAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fruB
Ortholog function: PTS system, fructose-specific IIA/FPr component
Escherichia coli str. K-12 substr. MG1655	b2169	-178	4.3	AATTGTGCAGCACATCAAACTT
Salmonella typhimurium LT2	STM2206	-177	4.6	AAATGTGCTTCACCTCAAAAAA
Citrobacter koseri ATCC BAA-895	CKO_00613	-50	4.1	AAGTGTGCTTTATCTCTAAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02600	-177	3.5	AAGTGTGCAGTACCTCTAAGTT
Enterobacter sp. 638	Ent638_2763	-178	4.3	AAATGTGCTGCACTTCTAAATT
Erwinia amylovora ATCC 49946	EAM_2223	-179	4.4	AAATGTGCTGGCTGTCAAAAAT
Yersinia pestis KIM	y2887	-178	4.1	AAATGTGCGGAATGTCAAAAAT
Serratia proteamaculans 568	Spro_3230	-177	4	AAGTGTGCGTGAGGTCAAAAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2729	-180	4.1	AAATGTGCGTGATGTCAAAATT
Edwardsiella tarda EIB202	ETAE_2303	-199	4.1	AAATGTGCTGAAGGTCTAAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu1992	-180	4.7	AAATGTGAGTAATCTCAAAAAA

Position: -181 Score: 3.4 Sequence: AAACGTGATTTAACGCCTGATT Locus tag: YintA_01003920
	YintA_01003920	-181	3.4	AAACGTGATTTAACGCCTGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hupA
Ortholog function: DNA-binding protein HU-alpha (HU-2)
Escherichia coli str. K-12 substr. MG1655	b4000	-179	3.4	AAACGTGATTTAACGCCTGATT
Citrobacter koseri ATCC BAA-895	CKO_02986	-179	3.4	AAACGTGATTTAACGCCTGATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04382	-179	3.4	AAACGTGATTTACCGCCTGAAT
Enterobacter sp. 638	Ent638_0213	-179	3.5	AAACGTGATTTAACGCCTGTTT
Yersinia pestis KIM	y0499	-181	3.4	AAACGTGATTTAACGCCTGATT
Serratia proteamaculans 568	Spro_0290	-181	3.4	AAACGTGATTTAACGCCTCATT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0238	-197	3.3	AAACGTGATTTAAGGCCTGAAA
Edwardsiella tarda EIB202	ETAE_0183	-182	3.3	AAACGTGATTTAACACCTGATT
Proteus mirabilis HI4320	PMI2771	-183	3.7	AAACGTGATTTAGTGCTTGAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu0492	-179	3.4	AAACGTGATTTAATGCTTTAAA

Position: -84 Score: 4.6 Sequence: AAAAGTGATCTTGGTCATACAT Locus tag: YintA_01003935
	YintA_01003935	-84	4.6	AAAAGTGATCTTGGTCATACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: raiA
Ortholog function: stationary phase translation inhibitor and ribosome stability factor
Escherichia coli str. K-12 substr. MG1655	b2597	-81	4.8	TTATGAGATTTTCATCACACAT
Citrobacter koseri ATCC BAA-895	CKO_03918	-40	5.2	TAATGTGATTTAAATCACGCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02919	-88	5.6	AAATGTGATTTATATCACACAT
Enterobacter sp. 638	Ent638_3076	-81	5.4	ATGTGTGATTTAGATCACACAT
Erwinia amylovora ATCC 49946	EAM_2617	-83	5.2	AAATGTGATTTCAATCACGATT
Serratia proteamaculans 568	Spro_0882	-83	4.8	ATACGTGATTTTCATCACGCAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3349	-86	4	AAAAGCGATCAATCTCACGCTT
Edwardsiella tarda EIB202	ETAE_2834	-82	3.8	ATCCGTGATTTTCCTCTCACAC
Proteus mirabilis HI4320	PMI0391	-82	4.6	AAAAGTGATCTTGATCATGTTT
Photorhabdus luminescens subsp. laumondii TTO1	plu1266	-87	5.1	AATAGTGATTTAGATCACCTTT

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of Crp regulog to Yersinia intermedia ATCC 29909

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --