Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagated regulons of Yersinia intermedia ATCC 29909

Type Regulator Effector Pathway Genes Sites
TF AcrR Rhodamine 6G; Ethidium bromide; Proflavin Multidrug resistance 2 2
TF AgaR N-acetylgalactosamine-6-phosphate; Galactosamine-6-phosphate N-acetylgalactosamine utilization 3 4
TF AllR Allantoin Allantoin utilization 2 2
TF AraC Arabinose Arabinose utilization 2 3
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 14 31
TF AscG Cellobiose-6-phosphate; Beta-glucoside-6-phosphate Beta-glucosides utilization; Cellobiose utilization 2 2
TF BirA Biotin Biotin biosynthesis 2 2
TF Crp Cyclic 3',5'-AMP Carbon catabolism 229 558
TF CueR Copper ion, (Cu+) Copper resistance 3 3
TF DeoR Deoxyribonucleoside utilization 2 4
TF DgoR Galactonate Galactonate utilization 1 1
TF ExuR Galacturonate Galacturonate utilization 8 15
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 3 3
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 10 13
TF Fnr Oxygen Energy metabolism; Anaerobic metabolism 86 160
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Central carbohydrate metabolism 17 23
TF Fur Iron ion, (Fe2+) Iron homeostasis 41 147
TF GalR/GalS Galactose Galactose utilization 4 4
TF GcvA Glycine Glycine metabolism 1 1
TF GlpR Glycerol 3-phosphate Glycerol utilization 5 7
TF GntR Gluconate Gluconate utilization 6 10
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 3 5
TF HutC cis-Urocanic acid Histidine utilization 4 4
TF IclR Pyruvate; Glyoxylate Glyoxylate bypass 1 1
TF IlvY 2-Acetolactate Branched-chain amino acid biosynthesis 2 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 3 4
TF KdgR 2-keto-3-deoxygluconate Pectin and polygalacturonate utlization 20 32
TF LacI Allolactose Lactose utilization 1 1
TF LeuO Guanosine 3',5'-bis(diphosphate) 1 6
TF LexA DNA damage SOS response 16 19
TF LfaR Sugar utilization 2 3
TF LsrR 4,5-dihydroxypentan-2,3-dione Quorum sensing; Biofilm formation 1 1
TF LysR LL-2,6-Diaminopimelate Lysine biosynthesis 2 2
TF MetR Homocysteine Methionine biosynthesis 5 7
TF ModE Molybdate Molybdopterin biosynthesis; Molybdenum homeostasis 3 3
TF MprA 2,4-Dinitrophenol; Carbonyl cyanide m-chlorophenylhydrazone Multidrug resistance 2 2
TF NadR NAD NAD biosynthesis 2 2
TF NagC N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 5 8
TF NarP Nitrate; Nitrite Nitrate and nitrite respiration 15 23
TF NhaR Potassium ion Osmotic stress response 1 1
TF NorR Nitric oxide Nitrosative stress response 1 1
TF NrdR Deoxyribonucleotides Ribonucleotide reductases 4 8
TF NsrR Nitric oxide Nitrosative stress response 7 11
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 8 18
TF PdhR Pyruvate Pyruvate metabolism 3 5
TF PhnF Phosphonate utilization 1 1
TF PurR Hypoxanthine; Guanine Purine metabolism 16 18
TF QorR Energy metabolism 2 2
TF RbsR Ribose Ribose utilization 1 2
TF RhaR Rhamnose Rhamnose utilization 2 2
TF RhaS Rhamnose Rhamnose utilization 4 4
TF SdaR Glycerate Glucarate utilization; Galactarate utilization 4 4
TF SorC Sorbose Sorbose utilization 1 2
TF TrpR Tryptophan Tryptophan biosynthesis 3 3
TF TyrR Tyrosine; Phenylalanine Aromatic amino acid metabolism 6 10
TF UxuR Glucuronate Glucuronate utilization 7 11
TF YiaJ Ascorbate-6-phosphate L-lyxose utilization 1 1
TF ZntR Zinc ion, (Zn2+) Zinc resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 5 6
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