Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of KdgR regulog to Yersinia intermedia ATCC 29909

Reference regulog properties
Source regulog: KdgR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: IclR
Regulation mode: repressor (activator)
Biological process: Pectin and polygalacturonate utlization
Effector: 2-keto-3-deoxygluconate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Yersinia intermedia ATCC 29909
Orthologous TF(s) YintA_01000154
Regulated genes 20
Built upon 159 sites [see more]
Predicted regulatory interactions in Yersinia intermedia ATCC 29909
Locus tag Position Score Sequence
Position: -42
Score: 5.2
Sequence: TAACGAAACATCATTCCATTT
Locus tag: YintA_01000010
YintA_01000010 -42 5.2 TAACGAAACATCATTCCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgX
Ortholog function: predicted 2-keto-3-deoxygluconate permease
Salmonella typhimurium LT2 STM4395 -34 5.8 AAATAAAACATTATTTTAATT
Citrobacter koseri ATCC BAA-895 CKO_03627 -31 5.2 AAATAAAACATTATTTCAAAG
Enterobacter sp. 638 Ent638_0375 -33 5.9 AATTGAAACGTCATTTTATTT
Yersinia pestis KIM y1734 -22 5.8 TAACGAAACATCATTTCATTT
Position: -97
Score: 5.7
Sequence: AAATGAAACATCGTTTCTATA
Locus tag: YintA_01000153
YintA_01000153 -97 5.7 AAATGAAACATCGTTTCTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ogl
Ortholog function: Oligogalacturonate lyase (EC 4.2.2.6)
Enterobacter sp. 638 Ent638_3293 -226 5.1 AATTAAAACGCCGTTTTACAA
Yersinia pestis KIM y1875 -96 5.8 AAATGAAACATTGTTTCTATA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2426 -180 5.8 AAATGAAACATTGTTTCTATA
Position: -76
Score: 4.7
Sequence: AATAAAACCACTGTTCTATTT
Locus tag: YintA_01000154
YintA_01000154 -76 4.7 AATAAAACCACTGTTCTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgR
Ortholog function: 2-keto-3-deoxy-D-gluconate repressor, IclR family
Yersinia pestis KIM y1876 -76 4.7 AATAAAACCATTGTTCTATTT
Position: -201
Score: 6
Sequence: TAATAAAACATCATTTCATTT
Locus tag: YintA_01000165
YintA_01000165 -201 6 TAATAAAACATCATTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kduI
Ortholog function: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Escherichia coli str. K-12 substr. MG1655 b2843 -130 6.3 AAATGAAACATTGTTTTATTT
-63 5.4 AAACGAAACAGTGTTTCACTA
Salmonella typhimurium LT2 STM3018 -123 6.2 AAATGAAACGTTGTTTTATTT
-58 5.3 AATCAAAACAGTGTTTTGATT
Citrobacter koseri ATCC BAA-895 CKO_04220 -119 6.2 AAATGAAACAACGTTTTATTT
-51 4.4 AAACGGAACGGTGTTTCGCCT
Enterobacter sp. 638 Ent638_3296 -127 5.4 AACTGAAACAACGTTTTAAAT
-60 5 AATCGGAACATTGTTTCGTTA
Yersinia pestis KIM y1887 -201 6 TAATAAAACATCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2400 -209 6.1 AAATAAAACATTATTTCATTT
Edwardsiella tarda EIB202 ETAE_1898 -129 5.6 AATCAAAACAGCATTTCATTT
Position: -155
Score: 6
Sequence: AAATGAAATGATGTTTTATTA
Locus tag: YintA_01000167
YintA_01000167 -155 6 AAATGAAATGATGTTTTATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgF
Ortholog function: Pectin degradation protein KdgF
Citrobacter koseri ATCC BAA-895 CKO_04218 -38 5.6 AGTTGAAACATTGTTTCAATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03255 -39 5.8 AAATGAAACAATGTTTCACTT
Enterobacter sp. 638 Ent638_3287 -38 5.5 AATTAAAACAATGTTTCACTA
Yersinia pestis KIM y1888 -155 6 AAATGAAATGATGTTTTATTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2399 -174 6.1 AAATGAAATAATGTTTTATTT
Position: -120
Score: 5.3
Sequence: TTATAAAACATCTTTTCATTA
Locus tag: YintA_01000283
YintA_01000283 -120 5.3 TTATAAAACATCTTTTCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: spiX
Ortholog function: predicted 5-keto-4-deoxyuronate isomerase
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1742 -54 5.1 AATTGAAATACAGTTTTAAAA
Position: -279
Score: 4.9
Sequence: ATACGAACCGTCGTTTCAGTT
Locus tag: YintA_01000756
YintA_01000756 -279 4.9 ATACGAACCGTCGTTTCAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pykF
Ortholog function: Pyruvate kinase (EC 2.7.1.40)
Escherichia coli str. K-12 substr. MG1655 b1676 -286 5 TTTTGAAACGCTGTTTTTGTT
Salmonella typhimurium LT2 STM1378 -286 4.7 TTTTGAAACAGGGTTTTCATT
Citrobacter koseri ATCC BAA-895 CKO_01709 -286 5 TTTTGAAACGCTGTTTTCATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02133 -285 5 ATTTGAAACGAGGTTTTTATT
Enterobacter sp. 638 Ent638_1768 -286 5.1 TTTTGAAACGCCGTTTCCATT
Serratia proteamaculans 568 Spro_2187 -203 4.1 AAtaacAACAcatTTTCATcT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1867 -259 5.1 ATACGGAACGTCGTTTCAATT
Position: -78
Score: 5.2
Sequence: AAATAAAATGACGTTCCATAA
Locus tag: YintA_01001503
YintA_01001503 -78 5.2 AAATAAAATGACGTTCCATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgM
Ortholog function: Oligogalacturonate-specific porin protein KdgM
Enterobacter sp. 638 Ent638_0483 -304 4.9 TCTCAAAACATCATTTCATTT
Yersinia pestis KIM y3833 -75 5.7 AAATAAAATACTGTTTCATAA
Position: -176
Score: 5.5
Sequence: ATTTAAAACGTCGTTTTAATA
Locus tag: YintA_01001508
YintA_01001508 -176 5.5 ATTTAAAACGTCGTTTTAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgK
Ortholog function: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Yersinia pestis KIM y3838 -225 5.1 ATTTAAAACACCGTTTTAATC
Serratia proteamaculans 568 Spro_4750 -105 6.2 AAATAAAACGTTGTTTTATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4360 -125 5.4 AAATAAAACATCGTTTCAAGA
Edwardsiella tarda EIB202 ETAE_3377 -91 5.4 AAACAGAACGTTGTTTTATTT
Position: -43
Score: 6
Sequence: TAATGAAACGTTATTTCATTT
Locus tag: YintA_01001611
YintA_01001611 -43 6 TAATGAAACGTTATTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjgK
Ortholog function: cytoplasmic protein involved in polygalacturonate utilization
Escherichia coli str. K-12 substr. MG1655 b4252 -35 6 AAATGAAACGTTGTTTTAATT
Salmonella typhimurium LT2 STM4468 -32 5.7 AAATAAAACGCTGTTTTAACT
Citrobacter koseri ATCC BAA-895 CKO_03553 -33 6.2 AAATGAAACGTTGTTTTATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04658 -33 5.8 AAATGAAATGCTGTTTTATAT
Enterobacter sp. 638 Ent638_0453 -34 6 AAATGAAACATTGTTTTATAT
Yersinia pestis KIM y0739 -41 5.9 TAATAAAACAGCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0383 -41 5.1 TTGTAAAACAGGGTTTCATTT
Edwardsiella tarda EIB202 ETAE_3112 -39 5.6 AAATAAAACGCAGTTTTATAA
Position: -166
Score: 5.2
Sequence: AAATAGAACAATGTTCCATTT
Locus tag: YintA_01002209
YintA_01002209 -166 5.2 AAATAGAACAATGTTCCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pemA
Ortholog function: Putative pectinesterase (EC 3.1.1.11)
Yersinia pestis KIM y3757 -149 5.3 AAATGGAATTGCGTTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3253 -213 5.1 TATTAAAATAACATTTCACTT
Position: -36
Score: 5.6
Sequence: TTATAAAACAACGTTTCTTTT
Locus tag: YintA_01003102
YintA_01003102 -36 5.6 TTATAAAACAACGTTTCTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pehX
Ortholog function: Exo-poly-alpha-D-galacturonosidase precursor (EC 3.2.1.82)
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3111 -291 4.9 TAATGAAACCATGTTTTACCA
Position: -171
Score: 5.9
Sequence: AAATAAAACAGTGTTTTATAA
Locus tag: YintA_01003248
YintA_01003248 -171 5.9 AAATAAAACAGTGTTTTATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiT
Ortholog function: Rhamnogalacturonide transporter
Citrobacter koseri ATCC BAA-895 CKO_01081 -190 5.4 AATAGAAACGCTGTTTTATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02390 -200 4.9 AAGAGAAATGCTGTTTTATAA
Enterobacter sp. 638 Ent638_2444 -189 5.6 AAAAGAAACGCTGTTTTATAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3560 -167 4.7 AGTTAAAATGCCTTTTTATAA
Position: -37
Score: 6
Sequence: TAATGAAACATTGTTTTAATT
Locus tag: YintA_01003651
YintA_01003651 -37 6 TAATGAAACATTGTTTTAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: togT
Ortholog function: Oligogalacturonide transporter
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02398 -46 5.2 TATAAAAACAGTGTTTCAAAA
Yersinia pestis KIM y2961 -47 4.5 AAAGAAAACAGTTATTCATTA
-25 6.1 AAATGAAACATTGTTTTAATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0817 -60 4.5 TAAAGAAATGATAGTTCAATC
-38 5.5 AACTGAAATATTGTTTCATAT
Position: -290
Score: 6
Sequence: ATATGAAACGGTGTTTTATTT
Locus tag: YintA_01003681
YintA_01003681 -290 6 ATATGAAACGGTGTTTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygjV
Ortholog function: putative transport protein
Escherichia coli str. K-12 substr. MG1655 b3090 -64 5.4 ATAAAAAACGGCGTTTCATAA
Yersinia pestis KIM y3597 -133 5.2 ATATGAAACGGTGTTCTGTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0648 -70 6.2 AAATAAAACGGCGTTTCATTT
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