Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fnr regulog to Photorhabdus luminescens subsp. laumondii TTO1

Reference regulog properties
Source regulog: Fnr - Enterobacteriales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Energy metabolism; Anaerobic metabolism
Effector: Oxygen
Phylum: Gammaproteobacteria
Propagated regulon:
Target genome Photorhabdus luminescens subsp. laumondii TTO1
Orthologous TF(s) plu2179
Regulated genes 53
Built upon 685 sites [see more]
Predicted regulatory interactions in Photorhabdus luminescens subsp. laumondii TTO1
Locus tag Position Score Sequence
Position: -261
Score: 4.2
Sequence: GTGATTTAAATCAC
Position: -225
Score: 3.9
Sequence: ATTATTAAAAACAA
Locus tag: plu0047
plu0047 -261 4.2 GTGATTTAAATCAC
-225 3.9 ATTATTAAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpI
Ortholog function: ATP synthase protein I
Citrobacter koseri ATCC BAA-895 CKO_00079 -122 4.2 TTGTTTGAAATCAC
Enterobacter sp. 638 Ent638_4125 -292 3.7 TTGATTAATATGAC
Erwinia amylovora ATCC 49946 EAM_3481 -124 3.9 TCGATTGAAATCAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4519 -191 3.7 ATGATTGTTAGCAA
Escherichia coli str. K-12 substr. MG1655 b3739 -123 4.2 TTGTTTGAAATCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04144 -122 4.2 TTGTTTGAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu0047 -225 3.9 ATTATTAAAAACAA
Proteus mirabilis HI4320 PMI3057 -130 4
Salmonella typhimurium LT2 STM3872 -122 4.2 TTGTTTGAAATCAC
Position: -346
Score: 3.6
Sequence: TTATGTCAAATCAA
Locus tag: plu0075
plu0075 -346 3.6 TTATGTCAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sodA
Ortholog function: Manganese superoxide dismutase (EC 1.15.1.1)
Enterobacter sp. 638 Ent638_4063 -132 3.6 ATGATACAAAAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0092 -143 3.5 ATGAAGTAAAGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04217 -146 4.2 TTGTTCTACATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu0075 -346 3.6 TTATGTCAAATCAA
Proteus mirabilis HI4320 PMI3036 -164 3.8 TTTATTTAAAATAA
-85 4 ATGATTTTCATTAA
Position: -319
Score: 3.6
Sequence: CAGATTCATATCAA
Position: -206
Score: 3.5
Sequence: TGGATGCAAATCAT
Locus tag: plu0209
plu0209 -319 3.6 CAGATTCATATCAA
-206 3.5 TGGATGCAAATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Citrobacter koseri ATCC BAA-895 CKO_04830 -204 4.1 TTGAGCCATGTCAA
Enterobacter sp. 638 Ent638_3821 -133 4.2 TTGAGCAAGGTCAA
Escherichia coli str. K-12 substr. MG1655 b3408 -203 4.4 TTGAGCCACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03778 -198 3.8 TTGCGGCATATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0209 -206 3.5 TGGATGCAAATCAT
Proteus mirabilis HI4320 PMI2920 -190 5.2 TTGATGTACATCAA
Salmonella typhimurium LT2 STM3505 -204 4.4 TTGAGCCATATCAA
Serratia proteamaculans 568 Spro_4628 -284 3.8 CTGATTTAACTCAC
Yersinia pestis KIM y3912 -93 4 ATTATTTAAATCAT
Position: -33
Score: 3.8
Sequence: TTGTTGATTCTCAA
Locus tag: plu0214
plu0214 -33 3.8 TTGTTGATTCTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pstS
Ortholog function: Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)
Citrobacter koseri ATCC BAA-895 CKO_00065 -243 4.4 CTGTTTTTAATCAA
Edwardsiella tarda EIB202 ETAE_3538 -93 3.8 TTTACTGTCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4477 -52 3.6 CTGATTGATAACGA
Escherichia coli str. K-12 substr. MG1655 b3728 -138 3.8 CTTATTTAAATCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu0214 -33 3.9 TTGTTGATTCTCAA
Proteus mirabilis HI4320 PMI2893 -46 4 TTGATAGATGTCGA
Position: -282
Score: 4.9
Sequence: TTGATGTACGTCAA
Locus tag: plu0562
plu0562 -282 4.9 TTGATGTACGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcA
Ortholog function: Aerobic respiration control protein arcA
Citrobacter koseri ATCC BAA-895 CKO_03387 -291 5.1 TTGATATATGTCAA
Edwardsiella tarda EIB202 ETAE_0561 -300 5.1 TTGATATATGTCAA
Enterobacter sp. 638 Ent638_0562 -291 5.1 TTGATATATGTCAA
Erwinia amylovora ATCC 49946 EAM_0640 -399 4.5 TTGATGCAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3893 -339 5.1 TTGATATATGTCAA
Escherichia coli str. K-12 substr. MG1655 b4401 -291 5.1 TTGATATATGTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04856 -291 5.1 TTGATATATGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0562 -282 4.9 TTGATGTACGTCAA
Proteus mirabilis HI4320 PMI3719 -343 4 ATTACATAAATCAA
-282 4.6 TTGATATGTGTCAA
Salmonella typhimurium LT2 STM4598 -291 5.1 TTGATATATGTCAA
Serratia proteamaculans 568 Spro_0681 -299 5.1 TTGATATATGTCAA
Yersinia pestis KIM y3721 -298 5.1 TTGATATATGTCAA
Position: -205
Score: 4
Sequence: TTGAACTAAATCAC
Position: 0
Score: 4.1
Sequence: ATGATTAAAATTAA
Locus tag: plu1196
plu1196 -205 4 TTGAACTAAATCAC
0 4.1 ATGATTAAAATTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nqrA
Ortholog function: Na-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00239 0 4.2 ATGATTAAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu1196 -205 4.1 TTGAACTAAATCAC
Proteus mirabilis HI4320 PMI0352 -205 4.2 TTGAGCTAAATCAC
Serratia proteamaculans 568 Spro_0953 0 4.3 ATGATTAAAATCAG
Yersinia pestis KIM y0951 18 4.2 ATGATTAAAATAAA
Position: -110
Score: 3.6
Sequence: TTGATGACAAAGAA
Locus tag: plu1425
plu1425 -110 3.6 TTGATGACAAAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltA
Ortholog function: Citrate synthase (EC 2.3.3.1)
Citrobacter koseri ATCC BAA-895 CKO_02439 -67 3.8 TTGATTTATGTAAC
Enterobacter sp. 638 Ent638_1221 -147 3.6 TCGCGCTAGATCAA
Erwinia amylovora ATCC 49946 EAM_1167 -171 3.7 ATGATACTCATCAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4121 -185 4.8 TTTATCTAAATCAA
Escherichia coli str. K-12 substr. MG1655 b0720 -173 3.6 TTATTCGTCATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00489 28 3.6 TTGCCGGACAACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1425 -110 3.6 TTGATGACAAAGAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3138 -56 3.8 CCTATTTAAATCAA
Salmonella typhimurium LT2 STM0730 -213 3.9 TCGAAATTAATCAA
Position: -127
Score: 4
Sequence: TTGTGAAAAAACAA
Locus tag: plu1426
plu1426 -127 4 TTGTGAAAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Citrobacter koseri ATCC BAA-895 CKO_02438 25 3.6 ATGTGAAAAAACAA
Edwardsiella tarda EIB202 ETAE_2588 10 4
Escherichia coli str. K-12 substr. MG1655 b0721 10 3.6 ATGTGAAAAAACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00728 -104 3.6 ATGTGAAAAAACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1426 -127 4 TTGTGAAAAAACAA
Proteus mirabilis HI4320 PMI0565 -2 4 TTGTGAAAAAACAA
Salmonella typhimurium LT2 STM0732 10 3.6 ATGTGAAAAAACAA
Serratia proteamaculans 568 Spro_1263 -249 4.1 GTGATCTAAATCAC
Yersinia pestis KIM y3071 -224 3.8 ATGTTATCAATCAG
Position: -267
Score: 3.7
Sequence: TTAATGTAAAACGA
Locus tag: plu1498
plu1498 -267 3.7 TTAATGTAAAACGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybhK
Ortholog function: Predicted transferase, NAD(P)-binding
Edwardsiella tarda EIB202 ETAE_2348 -92 3.9 TTGATACATGTCAC
Enterobacter sp. 638 Ent638_1272 -90 4.5 TTGATATACGTCAT
Erwinia amylovora ATCC 49946 EAM_1217 -88 4 TTGATATATAGCGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2818 -117 3.7 ATGAGCTTACTCAA
Escherichia coli str. K-12 substr. MG1655 b0780 -147 4.8 TTGATATACATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00809 -91 4 TTGATGTCGGTCAG
Salmonella typhimurium LT2 STM0801 -146 4.8 TTGATATATATCAT
Yersinia pestis KIM y3024 -190 4.2 TTGTTTAAAATCAC
Position: -155
Score: 3.7
Sequence: TCGTTTTACATTAA
Locus tag: plu1499
plu1499 -155 3.7 TCGTTTTACATTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaA
Ortholog function: Molybdenum cofactor biosynthesis protein MoaA
Citrobacter koseri ATCC BAA-895 CKO_02345 -253 4.7 CTGATGTATATCAA
Edwardsiella tarda EIB202 ETAE_2347 -380 3.9 GTGACATGTATCAA
Enterobacter sp. 638 Ent638_1273 -236 4.4 ATGACGTATATCAA
Erwinia amylovora ATCC 49946 EAM_1218 -212 4.2 TCGCTATATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2817 -321 3.5 ATGACCTGAGACAA
Escherichia coli str. K-12 substr. MG1655 b0781 -263 4.9 ATGATGTATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00810 -257 4 CTGACCGACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1499 -155 3.7 TCGTTTTACATTAA
Salmonella typhimurium LT2 STM0802 -264 5 ATGATATATATCAA
Serratia proteamaculans 568 Spro_1320 -312 3.7 GTGATTCCGGTCAA
Yersinia pestis KIM y3023 -310 4.3 GTGATTTTAAACAA
Position: 9
Score: 3.7
Sequence: TTAACCCACATCAA
Locus tag: plu1500
plu1500 9 3.7 TTAACCCACATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaC
Ortholog function: Molybdenum cofactor biosynthesis protein MoaC
Citrobacter koseri ATCC BAA-895 CKO_02343 -253 4.7 CTGATGTATATCAA
Edwardsiella tarda EIB202 ETAE_2346 -380 3.9 GTGACATGTATCAA
Enterobacter sp. 638 Ent638_1275 -236 4.4 ATGACGTATATCAA
Erwinia amylovora ATCC 49946 EAM_1220 -212 4.2 TCGCTATATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2815 -321 3.5 ATGACCTGAGACAA
Escherichia coli str. K-12 substr. MG1655 b0783 -263 4.9 ATGATGTATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00812 -257 4 CTGACCGACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1500 -155 3.7 TCGTTTTACATTAA
Salmonella typhimurium LT2 STM0804 -264 5 ATGATATATATCAA
Serratia proteamaculans 568 Spro_1322 -312 3.7 GTGATTCCGGTCAA
Yersinia pestis KIM y3021 -222 3.7 GTGATGATCAACAA
Position: -84
Score: 3.3
Sequence: ACGAGCAAAGTCAA
Locus tag: plu1540
plu1540 -84 3.3 ACGAGCAAAGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moeA
Ortholog function: Molybdopterin biosynthesis protein MoeA
Edwardsiella tarda EIB202 ETAE_1153 -335 3.8 ATGATACAGATCAC
Enterobacter sp. 638 Ent638_1321 -155 3.3 TCTATAAATATCAT
Erwinia amylovora ATCC 49946 EAM_1284 -244 3.5 CTGTGATAAATCAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2836 -383 3.7 ATGATGTAAAGCAG
Escherichia coli str. K-12 substr. MG1655 b0827 18 3.7 TTGATGTCGCTCGA
Photorhabdus luminescens subsp. laumondii TTO1 plu1540 -244 3.9 TTGACAGTGGTCAA
Proteus mirabilis HI4320 PMI0637 -182 3.7 TTAAAATACAACAA
Yersinia pestis KIM y2673 -202 3.8 TTGATATATATATA
Position: -159
Score: 4.6
Sequence: TTTATTAAAATCAA
Position: -84
Score: 4.9
Sequence: ATGATCTATATCAA
Locus tag: plu1614
plu1614 -159 4.6 TTTATTAAAATCAA
-84 4.9 ATGATCTATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: focA
Ortholog function: Formate efflux transporter (TC 2.A.44 family)
Citrobacter koseri ATCC BAA-895 CKO_02167 -116 4.9 ATGATCTATATCAA
Edwardsiella tarda EIB202 ETAE_2181 -117 4.2 ATGATCCATGTCAA
Enterobacter sp. 638 Ent638_1424 -74 4.9 ATGATCTATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2596 -228 4 ATGATTTTTATTAA
-75 4.5 ATGATCCACATCAA
Escherichia coli str. K-12 substr. MG1655 b0904 -74 4.9 ATGATCTATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00932 -117 4.9 ATGATCTATATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1614 -267 4.1 TTTATTTGCAACAA
-159 4.7 TTTATTAAAATCAA
-84 4.9 ATGATCTATATCAA
Proteus mirabilis HI4320 PMI0706 -159 4.1 TTATTATTAATCAA
-85 4.5 ATGATCCATATCAA
Salmonella typhimurium LT2 STM0974 -74 4.9 ATGATCTATATCAA
Serratia proteamaculans 568 Spro_1703 -143 3.9 ATAATTTAACTCAA
-81 4.6 ATGATCCAAATCAA
Yersinia pestis KIM y2789 -80 4.5 ATGATCCATATCAA
Position: -55
Score: 3.7
Sequence: TTTATTGTTATCAT
Locus tag: plu1616
plu1616 -55 3.7 TTTATTGTTATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ansB
Ortholog function: L-asparaginase (EC 3.5.1.1)
Edwardsiella tarda EIB202 ETAE_2179 0 3.7 ATGAAGTTAGTCAA
Escherichia coli str. K-12 substr. MG1655 b2957 -71 4.5 TTGTTTAACGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1616 -55 3.7 TTTATTGTTATCAT
Proteus mirabilis HI4320 PMI0708 -139 4.2 TTGATTTTAAATAA
Yersinia pestis KIM y2787 0 3.6 ATGAAATATATAAA
Position: -35
Score: 3.4
Sequence: TTGAAGGATATGAA
Locus tag: plu2179
plu2179 -35 3.4 TTGAAGGATATGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fnr
Ortholog function: Fumarate and nitrate reduction regulatory protein
Citrobacter koseri ATCC BAA-895 CKO_01409 -83 3.8 TTGATGTAAAGTAA
Edwardsiella tarda EIB202 ETAE_1744 -133 3.4 GTGCTATACATCAC
-33 4.6 TTGACCGATATCAA
Enterobacter sp. 638 Ent638_1853 -33 4.6 TTGACCAATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2207 -34 4.6 TTGACCAATATCAA
Escherichia coli str. K-12 substr. MG1655 b1334 -33 4.7 TTGACAAATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01530 -327 4.6 TTGACCAATATCAA
-185 3.5 ATGAGCTTGATCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu2179 -35 3.4 TTGAAGGATATGAA
Proteus mirabilis HI4320 PMI1203 -40 4.5 TTGACACATATCAA
Salmonella typhimurium LT2 STM1660.S -33 4.7 TTGACAAATATCAA
Serratia proteamaculans 568 Spro_2582 -34 4.4 TTGACGCATATCAA
Yersinia pestis KIM y2132 -32 4.4 TTGACGCATATCAA
Position: 7
Score: 4.5
Sequence: TTGATTTAAAAAAA
Locus tag: plu2432
plu2432 7 4.5 TTGATTTAAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: acnA
Ortholog function: Aconitate hydratase (EC 4.2.1.3); 2-methylisocitrate dehydratase (EC 4.2.1.99)
Enterobacter sp. 638 Ent638_2192 -135 4.6 TTGTTTTATCTCAA
Erwinia amylovora ATCC 49946 EAM_1866 37 4.4 TGGATGTAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1941 -98 3.7 ATGAGCTTACTCAA
Escherichia coli str. K-12 substr. MG1655 b1276 -133 3.7 TTGCTTTGCCACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2432 7 4.6 TTGATTTAAAAAAA
Salmonella typhimurium LT2 STM1712 -301 3.9 TTGATTAAACACAG
Yersinia pestis KIM y2063 -37 3.9 TTGAATTAAAACAC
Position: -160
Score: 5
Sequence: TTGATTTGGATCAA
Locus tag: plu2478
plu2478 -160 5 TTGATTTGGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W; colicin S4 receptor; putative transporter
Citrobacter koseri ATCC BAA-895 CKO_01333 -117 4.1 TTAATCTGGATCAA
Edwardsiella tarda EIB202 ETAE_1528 -157 4.9 TTGATGTCTATCAA
Enterobacter sp. 638 Ent638_2283 -117 4.1 TTAATCTGGATCAA
Erwinia amylovora ATCC 49946 EAM_1884 -160 5.4 TTGATCTAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2303 -160 4.8 TTGATCTGGATCAA
Escherichia coli str. K-12 substr. MG1655 b1256 -162 4.8 TTGATTTAAATCAC
-117 4.1 TTAATCCAGATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01248 -247 4.2 TTGATTTCACTCAT
-80 4.1 TTAATCTGGATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2478 -160 5 TTGATTTGGATCAA
Proteus mirabilis HI4320 PMI1350 -164 4.8 TTGATGTGGATCAA
Salmonella typhimurium LT2 STM1732 -117 4.1 TTAATCTGGATCAA
Serratia proteamaculans 568 Spro_2674 -131 5 TTGATTCAGATCAA
Yersinia pestis KIM y2044 -171 3.6 ATGATAAATGGCAA
-147 4.4 ATGATCCAGATCAA
Position: -134
Score: 4.5
Sequence: GTGATTAAGATCAA
Locus tag: plu2496
plu2496 -134 4.5 GTGATTAAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Citrobacter koseri ATCC BAA-895 CKO_01318 -238 4.1 TTGATCTGGATCAC
Enterobacter sp. 638 Ent638_2304 -249 4.5 TTGATTCAGATCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2326 -311 3.6 TCGATGTTGATCAC
-305 3.8 TTGATCACAAAAAA
Escherichia coli str. K-12 substr. MG1655 b1241 -237 4.3 TTGATTTGGATCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02199 -233 4.7 TTGATCTAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu2496 -134 4.5 GTGATTAAGATCAA
Proteus mirabilis HI4320 PMI1486 -242 3.8 GTGATGTAGATCAC
Salmonella typhimurium LT2 STM1749 -238 4.7 TTGATTTAGATCAC
Serratia proteamaculans 568 Spro_2704 -274 4.4 ATGATTTAAATCAC
Position: -103
Score: 5.1
Sequence: TTGATGAAAATCAA
Locus tag: plu2759
plu2759 -103 5.1 TTGATGAAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: upp
Ortholog function: Uracil phosphoribosyltransferase (EC 2.4.2.9)
Citrobacter koseri ATCC BAA-895 CKO_00293 -103 4.6 TTGATCCATGTCAA
Edwardsiella tarda EIB202 ETAE_1087 -97 4.5 TTGATTGAGATCAT
Enterobacter sp. 638 Ent638_2986 -97 4.4 TTGATCACCGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1255 -169 4.3 TTGATCTGGATCAG
Escherichia coli str. K-12 substr. MG1655 b2498 -95 4.6 TTGACTAAAGTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02821 -96 5 TTGATATACGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2759 -103 5.1 TTGATGAAAATCAA
Proteus mirabilis HI4320 PMI1574 -97 5.1 TTGATCAATATCAA
Salmonella typhimurium LT2 STM2498 -103 4.6 TTGATCCAGGTCAA
Yersinia pestis KIM y1408 -98 4.4 TTGATCTGAATCAG
Position: -137
Score: 5.2
Sequence: TTGATTTTCATCAA
Locus tag: plu2760
plu2760 -137 5.2 TTGATTTTCATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: purM
Ortholog function: Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)
Edwardsiella tarda EIB202 ETAE_1086 -186 4.7 ATGATCTCAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1254 -198 4.3 CTGATCCAGATCAA
Escherichia coli str. K-12 substr. MG1655 b2499 -243 4.6 TTGACTTTAGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2760 -137 5.2 TTGATTTTCATCAA
Proteus mirabilis HI4320 PMI1575 -148 5 TTGATATTGATCAA
Salmonella typhimurium LT2 STM2499.S -309 4.4 TTGACCTGGATCAA
Yersinia pestis KIM y1407 -312 4.5 CTGATTCAGATCAA
-274 3.7 ATGCTAAAAATCAG
Position: -150
Score: 4.2
Sequence: TTGATGTTGTTCAA
Locus tag: plu2821
plu2821 -150 4.2 TTGATGTTGTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase (EC 1.6.99.3)
Citrobacter koseri ATCC BAA-895 CKO_01946 -163 5.2 TTGATGTACATCAA
Edwardsiella tarda EIB202 ETAE_2070 -162 5.1 TTGATTTGAATCAA
Enterobacter sp. 638 Ent638_1624 -149 5.1 TTGATTCATATCAA
Erwinia amylovora ATCC 49946 EAM_1473 -146 4.2 TTGACCAGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1815 -149 5.4 TTGATATATATCAA
Escherichia coli str. K-12 substr. MG1655 b1109 -150 5.2 TTGATTAACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01106 -148 4.8 TTGATGCACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2821 -150 4.2 TTGATGTTGTTCAA
Proteus mirabilis HI4320 PMI0875 -153 5.5 TTGATATAAATCAA
Salmonella typhimurium LT2 STM1211 -150 4.8 TTGATGCACATCAA
Serratia proteamaculans 568 Spro_1926 -149 5.2 TTGATGTACATCAA
Yersinia pestis KIM y1777 -148 5.4 TTGATATATATCAA
Position: -207
Score: 3.7
Sequence: TTGTTATTTGTAAA
Locus tag: plu3089
plu3089 -207 3.7 TTGTTATTTGTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nuoA
Ortholog function: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00508 -198 4 TCGATGTAAATTAA
Edwardsiella tarda EIB202 ETAE_2385 -292 3.7 TTGATGTAAACGAA
Escherichia coli str. K-12 substr. MG1655 b2288 -433 3.7 ATGATGTTAAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02678 -392 3.6 TTGATTTACGACGG
Photorhabdus luminescens subsp. laumondii TTO1 plu3089 -207 3.8 TTGTTATTTGTAAA
Salmonella typhimurium LT2 STM2328 -199 4.6 TTGATGTAAATTAA
Serratia proteamaculans 568 Spro_3308 -280 3.8 TTTCTACACATCAA
Yersinia pestis KIM y1630 -465 3.6 TTTTATTAAAACAA
Position: -117
Score: 4.1
Sequence: ATGATGTTAATCAT
Locus tag: plu3095
plu3095 -117 4.1 ATGATGTTAATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: Acetate kinase (EC 2.7.2.1)
Citrobacter koseri ATCC BAA-895 CKO_00498 -92 4.1 ATGATGTTAATCAT
Edwardsiella tarda EIB202 ETAE_2397 -93 4.1 ATGATGTTAATCAT
Enterobacter sp. 638 Ent638_2840 -92 4.1 ATGATGTTAATCAT
Erwinia amylovora ATCC 49946 EAM_2301 -119 3.9 TTGCTTTCGGACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3039 -91 4.1 ATGATGTTAATCAT
Escherichia coli str. K-12 substr. MG1655 b2296 -92 4.1 ATGATGTTAATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02687 -91 4.1 ATGATGTTAATCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu3095 -117 4.1 ATGATGTTAATCAT
Proteus mirabilis HI4320 PMI1771 -165 3.7 TTGATGATTGGCAA
Salmonella typhimurium LT2 STM2337 -92 4.1 ATGATGTTAATCAT
Serratia proteamaculans 568 Spro_3316 -121 4.1 ATGATGTTAATCAT
Yersinia pestis KIM y1622 -163 4.1 ATGATGTTAATCAT
Position: -111
Score: 3.7
Sequence: TTGATTCGTATCCA
Position: -56
Score: 3.8
Sequence: CCTATTTAAATCAA
Locus tag: plu3138
plu3138 -111 3.7 TTGATTCGTATCCA
-56 3.8 CCTATTTAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltA
Ortholog function: Citrate synthase (EC 2.3.3.1)
Citrobacter koseri ATCC BAA-895 CKO_02439 -67 3.8 TTGATTTATGTAAC
Enterobacter sp. 638 Ent638_1221 -147 3.6 TCGCGCTAGATCAA
Erwinia amylovora ATCC 49946 EAM_1167 -171 3.7 ATGATACTCATCAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4121 -185 4.8 TTTATCTAAATCAA
Escherichia coli str. K-12 substr. MG1655 b0720 -173 3.6 TTATTCGTCATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00489 28 3.6 TTGCCGGACAACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1425 -110 3.6 TTGATGACAAAGAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3138 -56 3.8 CCTATTTAAATCAA
Salmonella typhimurium LT2 STM0730 -213 3.9 TCGAAATTAATCAA
Position: -233
Score: 4.1
Sequence: TTGATTCAGAACAG
Locus tag: plu3371
plu3371 -233 4.1 TTGATTCAGAACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ung
Ortholog function: Uracil-DNA glycosylase (EC 3.2.2.27)
Citrobacter koseri ATCC BAA-895 CKO_00204 -209 5.6 TTGATTTAAATCAA
-156 5.1 TTGTTTTACATCAA
Edwardsiella tarda EIB202 ETAE_2734 -396 4.1 TTGAGATAGAGCAA
-280 5.4 TTGATCTAAATCAA
-227 4.7 ATGTTTTACATCAA
Enterobacter sp. 638 Ent638_3065 -194 5 TTGACCTAAATCAA
-142 5.1 TTGTTTTATATCAA
34 4.2 CTGATGAAAAACAA
Erwinia amylovora ATCC 49946 EAM_2526 -177 4.9 TTGATGCAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3289 -228 5.1 TTGACTTAAATCAA
-175 5.1 TTGTTTTATATCAA
Escherichia coli str. K-12 substr. MG1655 b2580 -197 5.6 TTGATTTAAATCAA
-144 5.1 TTGTTTTACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02903 -206 5.5 TTGATATAAATCAA
-153 5.1 TTGTTTTACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3371 -233 4.1 TTGATTCAGAACAG
Proteus mirabilis HI4320 PMI1899 -221 5.1 TTGATAAATATCAA
-168 5.2 TTGTTTTAAATCAA
Salmonella typhimurium LT2 STM2647 -208 5.6 TTGATTTAAATCAA
-155 5.1 TTGTTTTACATCAA
Serratia proteamaculans 568 Spro_3683 -222 5 TTGATTAAAGTCAA
-169 4.4 ATGTTTTATGTCAA
Yersinia pestis KIM y1281 -213 5.2 TTGATTCAAATCAA
-160 4.7 ATGTTTTATATCAA
Position: -336
Score: 3.8
Sequence: TTGTGAGCTATCAA
Locus tag: plu3875
plu3875 -336 3.8 TTGTGAGCTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoA
Ortholog function: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
Photorhabdus luminescens subsp. laumondii TTO1 plu3875 -336 3.8 TTGTGAGCTATCAA
Proteus mirabilis HI4320 PMI0108 9 3.6 ATGAAATACATAAA
Serratia proteamaculans 568 Spro_1090 -293 3.6 TTCTTTTACATTAA
Yersinia pestis KIM y1021 -223 3.5 TTGTTTTTCCTTAA
Position: 15
Score: 3.5
Sequence: ATGACTAACCACAA
Locus tag: plu3877
plu3877 15 3.5 ATGACTAACCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoC
Ortholog function: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)
Citrobacter koseri ATCC BAA-895 CKO_02731 -267 3.7 TTGTTGATAATTAA
Erwinia amylovora ATCC 49946 EAM_0983 -207 3.7 GTTATTTAAATCAG
Escherichia coli str. K-12 substr. MG1655 b0430 -241 3.7 TTGTTTTATTTCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00392 -49 3.7 TTGAGGTCGTTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3877 -336 3.8 TTGTGAGCTATCAA
Proteus mirabilis HI4320 PMI0106 9 3.6 ATGAAATACATAAA
Salmonella typhimurium LT2 STM0441 -268 3.4 TTTATTGATAATAA
Serratia proteamaculans 568 Spro_1088 -293 3.6 TTCTTTTACATTAA
Yersinia pestis KIM y1019 -223 3.5 TTGTTTTTCCTTAA
Position: -334
Score: 4.1
Sequence: CTGATCTATATCAC
Position: 0
Score: 4.1
Sequence: ATGCTATATAACAA
Locus tag: plu4009
plu4009 -334 4.1 CTGATCTATATCAC
0 4.1 ATGCTATATAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltB
Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Escherichia coli str. K-12 substr. MG1655 b3212 -156 3.9 TTGACCTGTATCAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03624 -114 3.9 ATGTTGTACGACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4009 -362 4.1 GTGATATAAATCAC
-334 4.1 CTGATCTATATCAC
Proteus mirabilis HI4320 PMI3677 -353 3.7 TTATCTAACATCAA
-252 4.1 TTTTTATTTATCAA
Serratia proteamaculans 568 Spro_4344 -330 3.6 ATATTAAATATCAA
Yersinia pestis KIM y0128 -72 3.8 CTGTCTGATATCAA
Position: -306
Score: 4.2
Sequence: TTGATAAAGAACAG
Locus tag: plu4119
plu4119 -306 4.2 TTGATAAAGAACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpT
Ortholog function: Glycerol-3-phosphate transporter
Citrobacter koseri ATCC BAA-895 CKO_00537 -257 3.7 TCGTTTTTTATCAT
Edwardsiella tarda EIB202 ETAE_3116 -301 3.8 GTGATCAAAATCAC
Enterobacter sp. 638 Ent638_2804 -197 4.2 TTGATTTCGAACAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4166 -249 4.3 TTGATAAAGAGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02646 -214 3.8 TTGATTTCGAGCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu4119 -306 4.2 TTGATAAAGAACAG
Proteus mirabilis HI4320 PMI3591 -287 4 TTGATAATGAGCAA
-45 4.9 TTGTTTAATATCAA
Salmonella typhimurium LT2 STM2283 -256 3.7 TCGTTTTTTATCAT
Serratia proteamaculans 568 Spro_0199 -305 4.3 TTGATAAGGAACAA
Position: -239
Score: 4.1
Sequence: CTGTCTTAGATCAA
Position: -81
Score: 3.7
Sequence: ATGAAAAATAACAA
Position: -30
Score: 4
Sequence: TTAATTTCACTCAA
Locus tag: plu4124
plu4124 -239 4.1 CTGTCTTAGATCAA
-81 3.7 ATGAAAAATAACAA
-30 4 TTAATTTCACTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: frdA
Ortholog function: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Citrobacter koseri ATCC BAA-895 CKO_03678 -151 4 TTAATCAGAATCAA
Enterobacter sp. 638 Ent638_0343 -31 3.6 TTGCGGAATAACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4124 -239 4.1
Proteus mirabilis HI4320 PMI3588 -208 4
Salmonella typhimurium LT2 STM4343 -191 4.4 TTAATCAAAATCAA
Serratia proteamaculans 568 Spro_0419 -63 3.7 TTTATAAATATTAA
Position: -251
Score: 3.4
Sequence: TCGTTTTCAATCCA
Position: -207
Score: 3.7
Sequence: GTGATAAATATCAC
Position: -198
Score: 3.8
Sequence: ATCACATATATCAA
Position: -3
Score: 3.5
Sequence: CTCATGTCAAACAA
Locus tag: plu4137
plu4137 -251 3.4 TCGTTTTCAATCCA
-207 3.7 GTGATAAATATCAC
-198 3.8 ATCACATATATCAA
-3 3.5 CTCATGTCAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aspA
Ortholog function: Aspartate ammonia-lyase (EC 4.3.1.1)
Edwardsiella tarda EIB202 ETAE_0311 19 3.5 TTGAAGAAGATCTA
Enterobacter sp. 638 Ent638_0326 -184 3.6 TTAATAATTATCAT
Erwinia amylovora ATCC 49946 EAM_0416 -194 4 TTGATATAACACGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0621 -288 4 TTGTTCTAAAATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04529 0 3.5 ATGTTAAACAACAT
Photorhabdus luminescens subsp. laumondii TTO1 plu4137 -362 4.2 TTGATTTGGATGAA
-198 3.8 ATCACATATATCAA
Proteus mirabilis HI4320 PMI2546 -202 3.7 ATGAGATAGATCAC
Position: -136
Score: 3.7
Sequence: TTGAATATAATAAA
Locus tag: plu4138
plu4138 -136 3.7 TTGAATATAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuA
Ortholog function: Anaerobic C4-dicarboxylate transporter
Photorhabdus luminescens subsp. laumondii TTO1 plu4138 -136 3.7 TTGAATATAATAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4138 -362 4.2 TTGATTTGGATGAA
-198 3.8 ATCACATATATCAA
Position: -309
Score: 3.4
Sequence: TTCTTCTGAATCAG
Position: -274
Score: 3.4
Sequence: ATTATGTTCATCAT
Position: -253
Score: 3.8
Sequence: TTATTTTTGGTCAA
Position: -250
Score: 3.3
Sequence: TTTTTGGTCAACAA
Locus tag: plu4378
plu4378 -309 3.4 TTCTTCTGAATCAG
-274 3.4 ATTATGTTCATCAT
-253 3.8 TTATTTTTGGTCAA
-250 3.3 TTTTTGGTCAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ubiC
Ortholog function: Chorismate--pyruvate lyase (EC 4.1.3.40)
Erwinia amylovora ATCC 49946 EAM_0260 -194 3.8 CTGATATTAGTCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0626 -230 3.3 GTGACTAGGGTCAA
Escherichia coli str. K-12 substr. MG1655 b4039 -70 3.4 TTGCTTTACATCTC
Photorhabdus luminescens subsp. laumondii TTO1 plu4378 -253 3.8 TTATTTTTGGTCAA
Proteus mirabilis HI4320 PMI2753 -163 4.3 TTGTTTTTTCTCAA
Serratia proteamaculans 568 Spro_4464 -223 3.6 TTGCTGGAGATCAC
Yersinia pestis KIM y0568 -253 3.3 CTGATATTTATAAT
Position: -61
Score: 4
Sequence: TTGATTTATTTTAA
Locus tag: plu4396
plu4396 -61 4 TTGATTTATTTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceB
Ortholog function: Malate synthase (EC 2.3.3.9)
Citrobacter koseri ATCC BAA-895 CKO_03906 -162 4.2 TTTATTGTTATCAA
Enterobacter sp. 638 Ent638_0218 -111 4 TTGATTTTAGAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04395 -154 4.1 TTCATTGTTATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4396 -61 4
Proteus mirabilis HI4320 PMI2764 -64 4.2
Position: -160
Score: 4.6
Sequence: TTGTTTCAGATCAA
Locus tag: plu4499
plu4499 -160 4.6 TTGTTTCAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdD
Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Citrobacter koseri ATCC BAA-895 CKO_03580 -235 4.2 TTGATGCAAATCAC
Edwardsiella tarda EIB202 ETAE_0423 -196 4.7 TTGATTCAGGTCAA
Enterobacter sp. 638 Ent638_0437 -244 4.7 TTGTTCTGAATCAA
-213 4.2 TTGATGCAAATCAC
Erwinia amylovora ATCC 49946 EAM_3059 -106 4.2 TTGCTTCAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0375 -182 4.8 TTGCTCTACATCAA
Escherichia coli str. K-12 substr. MG1655 b4238 -249 4.8 TTGAGCTACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04646 -248 4.2 TTGTTCTGGGTCAA
-217 4.2 TTGATGCAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu4499 -160 4.7 TTGTTTCAGATCAA
Proteus mirabilis HI4320 PMI3451 -184 4.9 TTGATTTAGATCAG
Salmonella typhimurium LT2 STM4452 -249 5 TTGTTCTACATCAA
-218 4.2 TTGATGCAAATCAC
Serratia proteamaculans 568 Spro_0525 -217 4.7 TTGTTCTACGTCAA
Yersinia pestis KIM y0733 -192 4.6 TTGTTCTAGGTCAA
Position: -203
Score: 4.1
Sequence: TTGATCTCAAAAAA
Locus tag: plu4774
plu4774 -203 4.1 TTGATCTCAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pfkA
Ortholog function: 6-phosphofructokinase (EC 2.7.1.11)
Citrobacter koseri ATCC BAA-895 CKO_03085 -132 4 CTGACCTGAATCAA
Edwardsiella tarda EIB202 ETAE_3450 -223 4 CTGACCTGAATCAA
Enterobacter sp. 638 Ent638_4056 -174 4 CTGACCTGAATCAA
Erwinia amylovora ATCC 49946 EAM_0103 -31 4 ATTATTTGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4307 -140 4 CTGACCTGAATCAA
Escherichia coli str. K-12 substr. MG1655 b3916 -125 4 CTGACCTGAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04223 -123 4 CTGACCTGAATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4774 -203 4.1 TTGATCTCAAAAAA
Proteus mirabilis HI4320 PMI3203 -194 3.7 TTAATGCGCATCAA
Salmonella typhimurium LT2 STM4062 -126 4 CTGACCTGAATCAA
Serratia proteamaculans 568 Spro_4807 -145 4.1 GTGACTTGAATCAA
Yersinia pestis KIM y0059 -148 4.2 CTGACTTGAATCAA