Propagation of KdgR regulog to Citrobacter rodentium ICC168

Reference regulog properties
Source regulog:	KdgR - Enterobacteriales
Regulator type:	Transcription factor
Regulator family:	IclR
Regulation mode:	repressor (activator)
Biological process:	Pectin and polygalacturonate utlization
Effector:	2-keto-3-deoxygluconate
Phylum:	Proteobacteria/gamma
Propagated regulon:
Target genome	Citrobacter rodentium ICC168
Orthologous TF(s)	ROD_18671
Regulated genes	18

Built upon 159 sites [see more]

Predicted regulatory interactions in *Citrobacter rodentium ICC168*
	Locus tag	Position	Score	Sequence
Position: -99 Score: 6 Sequence: AATTAAAACGACGTTTCATTT Locus tag: ROD_13281
	ROD_13281	-99	6	AATTAAAACGACGTTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kduD2
Ortholog function: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
Citrobacter koseri ATCC BAA-895	CKO_01753	-99	5.9	TTATAAAACACTGTTTCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01240	-104	5.8	AATCAAAACATTGTTTCATTT
Enterobacter sp. 638	Ent638_1716	-94	5.6	TTTTAAAACATCATTTCATTT

Position: -286 Score: 5.1 Sequence: ATTTGAAACGCCGTTTTCATT Locus tag: ROD_13741
	ROD_13741	-286	5.1	ATTTGAAACGCCGTTTTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pykF
Ortholog function: Pyruvate kinase (EC 2.7.1.40)
Escherichia coli str. K-12 substr. MG1655	b1676	-286	5	TTTTGAAACGCTGTTTTTGTT
Salmonella typhimurium LT2	STM1378	-286	4.7	TTTTGAAACAGGGTTTTCATT
Citrobacter koseri ATCC BAA-895	CKO_01709	-286	5	TTTTGAAACGCTGTTTTCATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02133	-285	5	ATTTGAAACGAGGTTTTTATT
Enterobacter sp. 638	Ent638_1768	-286	5.1	TTTTGAAACGCCGTTTCCATT
Serratia proteamaculans 568	Spro_2187	-203	4.1	AAtaacAACAcatTTTCATcT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1867	-259	5.1	ATACGGAACGTCGTTTCAATT

Position: -191 Score: 5.4 Sequence: AATAGAAACGCTGTTTTATAA Locus tag: ROD_19221
	ROD_19221	-191	5.4	AATAGAAACGCTGTTTTATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiT
Ortholog function: Rhamnogalacturonide transporter
Citrobacter koseri ATCC BAA-895	CKO_01081	-190	5.4	AATAGAAACGCTGTTTTATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02390	-200	4.9	AAGAGAAATGCTGTTTTATAA
Enterobacter sp. 638	Ent638_2444	-189	5.6	AAAAGAAACGCTGTTTTATAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3560	-167	4.7	AGTTAAAATGCCTTTTTATAA

Position: -228 Score: 5 Sequence: TTTTGAAATAGTGTTTCAGAT Locus tag: ROD_19541
	ROD_19541	-228	5	TTTTGAAATAGTGTTTCAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tpfX
Ortholog function: ThiJ/PfpI-family hypothetical protein
Salmonella typhimurium LT2	STM1931	-231	5.4	TTATGAAACATTGTTTCAGAT
Citrobacter koseri ATCC BAA-895	CKO_01049	-199	5.4	TTTTGAAATGATGTTTCATAT
Enterobacter sp. 638	Ent638_2477	-42	5	GGATGAAACGCTGTTTTAAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0102	-85	6.1	TAATAAAACATCGTTTCATTT

Position: -9 Score: 4.9 Sequence: ATTTGAAATGTGGTTTCAACT Locus tag: ROD_20951
	ROD_20951	-9	4.9	ATTTGAAATGTGGTTTCAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yeeO
Ortholog function: predicted multidrug efflux system, MATE family
Escherichia coli str. K-12 substr. MG1655	b1985	-7	4.9	ATTTGAAATGTGGTTTCACTT
Salmonella typhimurium LT2	STM2013	-7	5	TATTGAAATGTGGTTTCAACT
Citrobacter koseri ATCC BAA-895	CKO_00837	-7	4.9	ATTTGAAATGAGGTTTCAACT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02447	-40	5.1	ATTTGAAATGTTGTTTCAACA
Enterobacter sp. 638	Ent638_2574	-74	5	ATTTGAAATGTAGTTTCAACT
Yersinia pestis KIM	y2593	-158	4.8	TCATGAAACTATGTTCCATTT
Serratia proteamaculans 568	Spro_3106	-39	5.2	ATTTGAAATGTTGTTTCACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2762	-140	5.1	AATAGAAACGTCATTTTAAAA

Position: -108 Score: 4.9 Sequence: GAATGAAATGCCATTTTGATT Locus tag: ROD_22971
	ROD_22971	-108	4.9	GAATGAAATGCCATTTTGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: setC
Ortholog function: lactose/glucose efflux system
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02601	-102	5	TTTTGAAACGCCTTTTTAATT
Enterobacter sp. 638	Ent638_2764	-109	4.9	TTTTGAAATGCTATTTTGATT

Position: -38 Score: 5.5 Sequence: AAATGAAACAATGTTTCAAAC Locus tag: ROD_28851
	ROD_28851	-38	5.5	AAATGAAACAATGTTTCAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgF
Ortholog function: Pectin degradation protein KdgF
Citrobacter koseri ATCC BAA-895	CKO_04218	-38	5.6	AGTTGAAACATTGTTTCAATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03255	-39	5.8	AAATGAAACAATGTTTCACTT
Enterobacter sp. 638	Ent638_3287	-38	5.5	AATTAAAACAATGTTTCACTA
Yersinia pestis KIM	y1888	-155	6	AAATGAAATGATGTTTTATTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2399	-174	6.1	AAATGAAATAATGTTTTATTT

Position: -130 Score: 5.7 Sequence: AAGTGAAACGTTGTTTTATTT Locus tag: ROD_28921
	ROD_28921	-130	5.7	AAGTGAAACGTTGTTTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kduI
Ortholog function: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Escherichia coli str. K-12 substr. MG1655	b2843	-130	6.3	AAATGAAACATTGTTTTATTT
		-63	5.4	AAACGAAACAGTGTTTCACTA
Salmonella typhimurium LT2	STM3018	-123	6.2	AAATGAAACGTTGTTTTATTT
		-58	5.3	AATCAAAACAGTGTTTTGATT
Citrobacter koseri ATCC BAA-895	CKO_04220	-119	6.2	AAATGAAACAACGTTTTATTT
		-51	4.4	AAACGGAACGGTGTTTCGCCT
Enterobacter sp. 638	Ent638_3296	-127	5.4	AACTGAAACAACGTTTTAAAT
		-60	5	AATCGGAACATTGTTTCGTTA
Yersinia pestis KIM	y1887	-201	6	TAATAAAACATCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2400	-209	6.1	AAATAAAACATTATTTCATTT
Edwardsiella tarda EIB202	ETAE_1898	-129	5.6	AATCAAAACAGCATTTCATTT

Position: -337 Score: 5.7 Sequence: AAATAAAACAACGTTTCACTT Position: -106 Score: 5 Sequence: CATTGAAACGATGTTTTGATA Locus tag: ROD_28931
	ROD_28931	-337	5.7	AAATAAAACAACGTTTCACTT
		-106	5	CATTGAAACGATGTTTTGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ogl
Ortholog function: Oligogalacturonate lyase (EC 4.2.2.6)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03266	-299	5.8	ATTTAAAACGATGTTTCATTT
		-103	5.6	TAATGAAACAATGTTTTGATA
Enterobacter sp. 638	Ent638_3297	-105	5	CATTGAAACGTCGTTTTGATA

Position: -30 Score: 5.2 Sequence: AAATAAAACAACATTTCAAAC Locus tag: ROD_32591
	ROD_32591	-30	5.2	AAATAAAACAACATTTCAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgX
Ortholog function: predicted 2-keto-3-deoxygluconate permease
Salmonella typhimurium LT2	STM4395	-34	5.8	AAATAAAACATTATTTTAATT
Citrobacter koseri ATCC BAA-895	CKO_03627	-31	5.2	AAATAAAACATTATTTCAAAG
Enterobacter sp. 638	Ent638_0375	-33	5.9	AATTGAAACGTCATTTTATTT
Yersinia pestis KIM	y1734	-22	5.8	TAACGAAACATCATTTCATTT

Position: -33 Score: 5.9 Sequence: AAATGAAACAATGTTTTAAAT Locus tag: ROD_33191
	ROD_33191	-33	5.9	AAATGAAACAATGTTTTAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjgK
Ortholog function: cytoplasmic protein involved in polygalacturonate utilization
Escherichia coli str. K-12 substr. MG1655	b4252	-35	6	AAATGAAACGTTGTTTTAATT
Salmonella typhimurium LT2	STM4468	-32	5.7	AAATAAAACGCTGTTTTAACT
Citrobacter koseri ATCC BAA-895	CKO_03553	-33	6.2	AAATGAAACGTTGTTTTATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04658	-33	5.8	AAATGAAATGCTGTTTTATAT
Enterobacter sp. 638	Ent638_0453	-34	6	AAATGAAACATTGTTTTATAT
Yersinia pestis KIM	y0739	-41	5.9	TAATAAAACAGCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0383	-41	5.1	TTGTAAAACAGGGTTTCATTT
Edwardsiella tarda EIB202	ETAE_3112	-39	5.6	AAATAAAACGCAGTTTTATAA

Position: -68 Score: 4.9 Sequence: AACAGAAACGCTGTTTCAATG Locus tag: ROD_34441
	ROD_34441	-68	4.9	AACAGAAACGCTGTTTCAATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjcB
Ortholog function: putative inner membrane protein
Salmonella typhimurium LT2	STM4263	-120	5.4	AATAGAAACAATGTTTCATTC
Citrobacter koseri ATCC BAA-895	CKO_03830	-121	5.1	AACAGAAACGTTGTTTCATTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04460	-113	4.9	AACAGAAATGGCGTTTCATCA

Position: -86 Score: 5.3 Sequence: TAATGGAACGTTGTTTTAATA Locus tag: ROD_42811
	ROD_42811	-86	5.3	TAATGGAACGTTGTTTTAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgK
Ortholog function: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Salmonella typhimurium LT2	STM3612	-85	4.9	TAATGGACCGATGTTTTAATA
Citrobacter koseri ATCC BAA-895	CKO_04968	-87	5.3	TAATGGAACGATGTTTTAATA

Position: -49 Score: 5.2 Sequence: AACTAAAACACTGTTTTAACA Locus tag: ROD_43491
	ROD_43491	-49	5.2	AACTAAAACACTGTTTTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiA
Ortholog function: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit
Citrobacter koseri ATCC BAA-895	CKO_04899	-138	5.1	TTTTAAACCATCGTTTCAATT
		-50	4.8	AACTAAAACAATGTTTTAACG
Enterobacter sp. 638	Ent638_3876	-134	4.5	TTTCAAACCATCGTTTCAAAA
		-49	4.8	AACTAAAACAACGTTTTAACG
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0357	-239	5.6	ATATAAAACAGCATTTCATAT

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of KdgR regulog to Citrobacter rodentium ICC168

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --