Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fnr regulog to Photorhabdus asymbiotica

Reference regulog properties
Source regulog: Fnr - Enterobacteriales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Energy metabolism; Anaerobic metabolism
Effector: Oxygen
Phylum: Gammaproteobacteria
Propagated regulon:
Target genome Photorhabdus asymbiotica
Orthologous TF(s) PAU_02371
Regulated genes 47
Built upon 685 sites [see more]
Predicted regulatory interactions in Photorhabdus asymbiotica
Locus tag Position Score Sequence
Position: -259
Score: 4.2
Sequence: GTGATTTAAATCAC
Position: -224
Score: 3.9
Sequence: ATTATTAAAAACAA
Locus tag: PAU_00043
PAU_00043 -259 4.2 GTGATTTAAATCAC
-224 3.9 ATTATTAAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpI
Ortholog function: ATP synthase protein I
Citrobacter koseri ATCC BAA-895 CKO_00079 -122 4.2 TTGTTTGAAATCAC
Enterobacter sp. 638 Ent638_4125 -292 3.7 TTGATTAATATGAC
Erwinia amylovora ATCC 49946 EAM_3481 -124 3.9 TCGATTGAAATCAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4519 -191 3.7 ATGATTGTTAGCAA
Escherichia coli str. K-12 substr. MG1655 b3739 -123 4.2 TTGTTTGAAATCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04144 -122 4.2 TTGTTTGAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu0047 -225 3.9 ATTATTAAAAACAA
Proteus mirabilis HI4320 PMI3057 -130 4
Salmonella typhimurium LT2 STM3872 -122 4.2 TTGTTTGAAATCAC
Position: -166
Score: 3.6
Sequence: CTGATCAATACCAA
Position: -55
Score: 3.9
Sequence: TTTATATTAATAAA
Locus tag: PAU_00152
PAU_00152 -166 3.6 CTGATCAATACCAA
-55 3.9 TTTATATTAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Citrobacter koseri ATCC BAA-895 CKO_04830 -204 4.1 TTGAGCCATGTCAA
Enterobacter sp. 638 Ent638_3821 -133 4.2 TTGAGCAAGGTCAA
Escherichia coli str. K-12 substr. MG1655 b3408 -203 4.4 TTGAGCCACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03778 -198 3.8 TTGCGGCATATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0209 -206 3.5 TGGATGCAAATCAT
Proteus mirabilis HI4320 PMI2920 -190 5.2 TTGATGTACATCAA
Salmonella typhimurium LT2 STM3505 -204 4.4 TTGAGCCATATCAA
Serratia proteamaculans 568 Spro_4628 -284 3.8 CTGATTTAACTCAC
Yersinia pestis KIM y3912 -93 4 ATTATTTAAATCAT
Position: -61
Score: 4
Sequence: TTGATTTATTTTAA
Locus tag: PAU_00416
PAU_00416 -61 4 TTGATTTATTTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceB
Ortholog function: Malate synthase (EC 2.3.3.9)
Citrobacter koseri ATCC BAA-895 CKO_03906 -162 4.2 TTTATTGTTATCAA
Enterobacter sp. 638 Ent638_0218 -111 4 TTGATTTTAGAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04395 -154 4.1 TTCATTGTTATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4396 -61 4
Proteus mirabilis HI4320 PMI2764 -64 4.2
Position: -282
Score: 4.9
Sequence: TTGATGTACGTCAA
Locus tag: PAU_00532
PAU_00532 -282 4.9 TTGATGTACGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcA
Ortholog function: Aerobic respiration control protein arcA
Citrobacter koseri ATCC BAA-895 CKO_03387 -291 5.1 TTGATATATGTCAA
Edwardsiella tarda EIB202 ETAE_0561 -300 5.1 TTGATATATGTCAA
Enterobacter sp. 638 Ent638_0562 -291 5.1 TTGATATATGTCAA
Erwinia amylovora ATCC 49946 EAM_0640 -399 4.5 TTGATGCAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3893 -339 5.1 TTGATATATGTCAA
Escherichia coli str. K-12 substr. MG1655 b4401 -291 5.1 TTGATATATGTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04856 -291 5.1 TTGATATATGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0562 -282 4.9 TTGATGTACGTCAA
Proteus mirabilis HI4320 PMI3719 -343 4 ATTACATAAATCAA
-282 4.6 TTGATATGTGTCAA
Salmonella typhimurium LT2 STM4598 -291 5.1 TTGATATATGTCAA
Serratia proteamaculans 568 Spro_0681 -299 5.1 TTGATATATGTCAA
Yersinia pestis KIM y3721 -298 5.1 TTGATATATGTCAA
Position: -316
Score: 4
Sequence: TTAATCTAATTCAA
Position: -236
Score: 4.1
Sequence: TTATTTTACAACAA
Locus tag: PAU_00744
PAU_00744 -316 4 TTAATCTAATTCAA
-236 4.1 TTATTTTACAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fdnG
Ortholog function: Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1408 -81 3.9 TTGATTTTGCGCAA
Position: -118
Score: 4.1
Sequence: ATGATGTTAATCAT
Locus tag: PAU_01513
PAU_01513 -118 4.1 ATGATGTTAATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: Acetate kinase (EC 2.7.2.1)
Citrobacter koseri ATCC BAA-895 CKO_00498 -92 4.1 ATGATGTTAATCAT
Edwardsiella tarda EIB202 ETAE_2397 -93 4.1 ATGATGTTAATCAT
Enterobacter sp. 638 Ent638_2840 -92 4.1 ATGATGTTAATCAT
Erwinia amylovora ATCC 49946 EAM_2301 -119 3.9 TTGCTTTCGGACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3039 -91 4.1 ATGATGTTAATCAT
Escherichia coli str. K-12 substr. MG1655 b2296 -92 4.1 ATGATGTTAATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02687 -91 4.1 ATGATGTTAATCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu3095 -117 4.1 ATGATGTTAATCAT
Proteus mirabilis HI4320 PMI1771 -165 3.7 TTGATGATTGGCAA
Salmonella typhimurium LT2 STM2337 -92 4.1 ATGATGTTAATCAT
Serratia proteamaculans 568 Spro_3316 -121 4.1 ATGATGTTAATCAT
Yersinia pestis KIM y1622 -163 4.1 ATGATGTTAATCAT
Position: -150
Score: 4.5
Sequence: TTGATGTCACTCAA
Locus tag: PAU_01717
PAU_01717 -150 4.5 TTGATGTCACTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase (EC 1.6.99.3)
Citrobacter koseri ATCC BAA-895 CKO_01946 -163 5.2 TTGATGTACATCAA
Edwardsiella tarda EIB202 ETAE_2070 -162 5.1 TTGATTTGAATCAA
Enterobacter sp. 638 Ent638_1624 -149 5.1 TTGATTCATATCAA
Erwinia amylovora ATCC 49946 EAM_1473 -146 4.2 TTGACCAGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1815 -149 5.4 TTGATATATATCAA
Escherichia coli str. K-12 substr. MG1655 b1109 -150 5.2 TTGATTAACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01106 -148 4.8 TTGATGCACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2821 -150 4.2 TTGATGTTGTTCAA
Proteus mirabilis HI4320 PMI0875 -153 5.5 TTGATATAAATCAA
Salmonella typhimurium LT2 STM1211 -150 4.8 TTGATGCACATCAA
Serratia proteamaculans 568 Spro_1926 -149 5.2 TTGATGTACATCAA
Yersinia pestis KIM y1777 -148 5.4 TTGATATATATCAA
Position: -249
Score: 4.2
Sequence: TTGTTAAATATCAG
Locus tag: PAU_01740
PAU_01740 -249 4.2 TTGTTAAATATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: icdA
Ortholog function: Isocitrate dehydrogenase (EC 1.1.1.42)
Edwardsiella tarda EIB202 ETAE_2050 -73 3.9 TTTTATTAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2439 -158 3.7 GTGATTTTTAACAG
Escherichia coli str. K-12 substr. MG1655 b1136 -89 3.6 TTGCTCTAAAGCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu2801 -249 4.8 TTGTTAAATATCAA
Serratia proteamaculans 568 Spro_2025 -3 4.3 TTGATGGAAAGCAA
Yersinia pestis KIM y1802 -106 3.7 GTGATTTTTAACAG
Position: -148
Score: 5.3
Sequence: TTGATTTTAATCAA
Locus tag: PAU_01780
PAU_01780 -148 5.3 TTGATTTTAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: purM
Ortholog function: Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)
Edwardsiella tarda EIB202 ETAE_1086 -186 4.7 ATGATCTCAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1254 -198 4.3 CTGATCCAGATCAA
Escherichia coli str. K-12 substr. MG1655 b2499 -243 4.6 TTGACTTTAGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2760 -137 5.2 TTGATTTTCATCAA
Proteus mirabilis HI4320 PMI1575 -148 5 TTGATATTGATCAA
Salmonella typhimurium LT2 STM2499.S -309 4.4 TTGACCTGGATCAA
Yersinia pestis KIM y1407 -312 4.5 CTGATTCAGATCAA
-274 3.7 ATGCTAAAAATCAG
Position: -104
Score: 5.3
Sequence: TTGATTAAAATCAA
Locus tag: PAU_01781
PAU_01781 -104 5.3 TTGATTAAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: upp
Ortholog function: Uracil phosphoribosyltransferase (EC 2.4.2.9)
Citrobacter koseri ATCC BAA-895 CKO_00293 -103 4.6 TTGATCCATGTCAA
Edwardsiella tarda EIB202 ETAE_1087 -97 4.5 TTGATTGAGATCAT
Enterobacter sp. 638 Ent638_2986 -97 4.4 TTGATCACCGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1255 -169 4.3 TTGATCTGGATCAG
Escherichia coli str. K-12 substr. MG1655 b2498 -95 4.6 TTGACTAAAGTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02821 -96 5 TTGATATACGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2759 -103 5.1 TTGATGAAAATCAA
Proteus mirabilis HI4320 PMI1574 -97 5.1 TTGATCAATATCAA
Salmonella typhimurium LT2 STM2498 -103 4.6 TTGATCCAGGTCAA
Yersinia pestis KIM y1408 -98 4.4 TTGATCTGAATCAG
Position: -134
Score: 4.5
Sequence: GTGATTAAGATCAA
Position: -26
Score: 3.8
Sequence: TTAATATTTATCAG
Locus tag: PAU_02030
PAU_02030 -134 4.5 GTGATTAAGATCAA
-26 3.8 TTAATATTTATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Citrobacter koseri ATCC BAA-895 CKO_01318 -238 4.1 TTGATCTGGATCAC
Enterobacter sp. 638 Ent638_2304 -249 4.5 TTGATTCAGATCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2326 -311 3.6 TCGATGTTGATCAC
-305 3.8 TTGATCACAAAAAA
Escherichia coli str. K-12 substr. MG1655 b1241 -237 4.3 TTGATTTGGATCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02199 -233 4.7 TTGATCTAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu2496 -134 4.5 GTGATTAAGATCAA
Proteus mirabilis HI4320 PMI1486 -242 3.8 GTGATGTAGATCAC
Salmonella typhimurium LT2 STM1749 -238 4.7 TTGATTTAGATCAC
Serratia proteamaculans 568 Spro_2704 -274 4.4 ATGATTTAAATCAC
Position: -160
Score: 5
Sequence: TTGATTTGCATCAA
Locus tag: PAU_02049
PAU_02049 -160 5 TTGATTTGCATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W; colicin S4 receptor; putative transporter
Citrobacter koseri ATCC BAA-895 CKO_01333 -117 4.1 TTAATCTGGATCAA
Edwardsiella tarda EIB202 ETAE_1528 -157 4.9 TTGATGTCTATCAA
Enterobacter sp. 638 Ent638_2283 -117 4.1 TTAATCTGGATCAA
Erwinia amylovora ATCC 49946 EAM_1884 -160 5.4 TTGATCTAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2303 -160 4.8 TTGATCTGGATCAA
Escherichia coli str. K-12 substr. MG1655 b1256 -162 4.8 TTGATTTAAATCAC
-117 4.1 TTAATCCAGATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01248 -247 4.2 TTGATTTCACTCAT
-80 4.1 TTAATCTGGATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2478 -160 5 TTGATTTGGATCAA
Proteus mirabilis HI4320 PMI1350 -164 4.8 TTGATGTGGATCAA
Salmonella typhimurium LT2 STM1732 -117 4.1 TTAATCTGGATCAA
Serratia proteamaculans 568 Spro_2674 -131 5 TTGATTCAGATCAA
Yersinia pestis KIM y2044 -171 3.6 ATGATAAATGGCAA
-147 4.4 ATGATCCAGATCAA
Position: 7
Score: 4
Sequence: TTGATTTAAAAAAG
Locus tag: PAU_02077
PAU_02077 7 4 TTGATTTAAAAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: acnA
Ortholog function: Aconitate hydratase (EC 4.2.1.3); 2-methylisocitrate dehydratase (EC 4.2.1.99)
Enterobacter sp. 638 Ent638_2192 -135 4.6 TTGTTTTATCTCAA
Erwinia amylovora ATCC 49946 EAM_1866 37 4.4 TGGATGTAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1941 -98 3.7 ATGAGCTTACTCAA
Escherichia coli str. K-12 substr. MG1655 b1276 -133 3.7 TTGCTTTGCCACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2432 7 4.6 TTGATTTAAAAAAA
Salmonella typhimurium LT2 STM1712 -301 3.9 TTGATTAAACACAG
Yersinia pestis KIM y2063 -37 3.9 TTGAATTAAAACAC
Position: -268
Score: 3.3
Sequence: TTGCTTTCCTTCAG
Position: -188
Score: 3.4
Sequence: TTTTGTTATGACAA
Position: -35
Score: 4.4
Sequence: TTGAGCCATATCAA
Locus tag: PAU_02371
PAU_02371 -268 3.3 TTGCTTTCCTTCAG
-188 3.4 TTTTGTTATGACAA
-35 4.4 TTGAGCCATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fnr
Ortholog function: Fumarate and nitrate reduction regulatory protein
Citrobacter koseri ATCC BAA-895 CKO_01409 -83 3.8 TTGATGTAAAGTAA
Edwardsiella tarda EIB202 ETAE_1744 -133 3.4 GTGCTATACATCAC
-33 4.6 TTGACCGATATCAA
Enterobacter sp. 638 Ent638_1853 -33 4.6 TTGACCAATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2207 -34 4.6 TTGACCAATATCAA
Escherichia coli str. K-12 substr. MG1655 b1334 -33 4.7 TTGACAAATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01530 -327 4.6 TTGACCAATATCAA
-185 3.5 ATGAGCTTGATCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu2179 -35 3.4 TTGAAGGATATGAA
Proteus mirabilis HI4320 PMI1203 -40 4.5 TTGACACATATCAA
Salmonella typhimurium LT2 STM1660.S -33 4.7 TTGACAAATATCAA
Serratia proteamaculans 568 Spro_2582 -34 4.4 TTGACGCATATCAA
Yersinia pestis KIM y2132 -32 4.4 TTGACGCATATCAA
Position: -55
Score: 3.7
Sequence: TTTATTGTTATCAT
Locus tag: PAU_02834
PAU_02834 -55 3.7 TTTATTGTTATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ansB
Ortholog function: L-asparaginase (EC 3.5.1.1)
Edwardsiella tarda EIB202 ETAE_2179 0 3.7 ATGAAGTTAGTCAA
Escherichia coli str. K-12 substr. MG1655 b2957 -71 4.5 TTGTTTAACGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1616 -55 3.7 TTTATTGTTATCAT
Proteus mirabilis HI4320 PMI0708 -139 4.2 TTGATTTTAAATAA
Yersinia pestis KIM y2787 0 3.6 ATGAAATATATAAA
Position: -264
Score: 4.6
Sequence: TTTATTTAAAACAA
Position: -157
Score: 4.6
Sequence: TTTATTAAAATCAA
Position: -83
Score: 4.9
Sequence: ATGATCTATATCAA
Locus tag: PAU_02836
PAU_02836 -264 4.6 TTTATTTAAAACAA
-157 4.6 TTTATTAAAATCAA
-83 4.9 ATGATCTATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: focA
Ortholog function: Formate efflux transporter (TC 2.A.44 family)
Citrobacter koseri ATCC BAA-895 CKO_02167 -116 4.9 ATGATCTATATCAA
Edwardsiella tarda EIB202 ETAE_2181 -117 4.2 ATGATCCATGTCAA
Enterobacter sp. 638 Ent638_1424 -74 4.9 ATGATCTATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2596 -228 4 ATGATTTTTATTAA
-75 4.5 ATGATCCACATCAA
Escherichia coli str. K-12 substr. MG1655 b0904 -74 4.9 ATGATCTATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00932 -117 4.9 ATGATCTATATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1614 -267 4.1 TTTATTTGCAACAA
-159 4.7 TTTATTAAAATCAA
-84 4.9 ATGATCTATATCAA
Proteus mirabilis HI4320 PMI0706 -159 4.1 TTATTATTAATCAA
-85 4.5 ATGATCCATATCAA
Salmonella typhimurium LT2 STM0974 -74 4.9 ATGATCTATATCAA
Serratia proteamaculans 568 Spro_1703 -143 3.9 ATAATTTAACTCAA
-81 4.6 ATGATCCAAATCAA
Yersinia pestis KIM y2789 -80 4.5 ATGATCCATATCAA
Position: 9
Score: 3.8
Sequence: TTGACTCACATTAA
Locus tag: PAU_02933
PAU_02933 9 3.8 TTGACTCACATTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaC
Ortholog function: Molybdenum cofactor biosynthesis protein MoaC
Citrobacter koseri ATCC BAA-895 CKO_02343 -253 4.7 CTGATGTATATCAA
Edwardsiella tarda EIB202 ETAE_2346 -380 3.9 GTGACATGTATCAA
Enterobacter sp. 638 Ent638_1275 -236 4.4 ATGACGTATATCAA
Erwinia amylovora ATCC 49946 EAM_1220 -212 4.2 TCGCTATATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2815 -321 3.5 ATGACCTGAGACAA
Escherichia coli str. K-12 substr. MG1655 b0783 -263 4.9 ATGATGTATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00812 -257 4 CTGACCGACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1500 -155 3.7 TCGTTTTACATTAA
Salmonella typhimurium LT2 STM0804 -264 5 ATGATATATATCAA
Serratia proteamaculans 568 Spro_1322 -312 3.7 GTGATTCCGGTCAA
Yersinia pestis KIM y3021 -222 3.7 GTGATGATCAACAA
Position: -322
Score: 4.1
Sequence: GTGATTTAACACAA
Locus tag: PAU_02934
PAU_02934 -322 4.1 GTGATTTAACACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaA
Ortholog function: Molybdenum cofactor biosynthesis protein MoaA
Citrobacter koseri ATCC BAA-895 CKO_02345 -253 4.7 CTGATGTATATCAA
Edwardsiella tarda EIB202 ETAE_2347 -380 3.9 GTGACATGTATCAA
Enterobacter sp. 638 Ent638_1273 -236 4.4 ATGACGTATATCAA
Erwinia amylovora ATCC 49946 EAM_1218 -212 4.2 TCGCTATATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2817 -321 3.5 ATGACCTGAGACAA
Escherichia coli str. K-12 substr. MG1655 b0781 -263 4.9 ATGATGTATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00810 -257 4 CTGACCGACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1499 -155 3.7 TCGTTTTACATTAA
Salmonella typhimurium LT2 STM0802 -264 5 ATGATATATATCAA
Serratia proteamaculans 568 Spro_1320 -312 3.7 GTGATTCCGGTCAA
Yersinia pestis KIM y3023 -310 4.3 GTGATTTTAAACAA
Position: -99
Score: 4
Sequence: TTGTGTTAAATCAC
Locus tag: PAU_02935
PAU_02935 -99 4 TTGTGTTAAATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybhK
Ortholog function: Predicted transferase, NAD(P)-binding
Edwardsiella tarda EIB202 ETAE_2348 -92 3.9 TTGATACATGTCAC
Enterobacter sp. 638 Ent638_1272 -90 4.5 TTGATATACGTCAT
Erwinia amylovora ATCC 49946 EAM_1217 -88 4 TTGATATATAGCGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2818 -117 3.7 ATGAGCTTACTCAA
Escherichia coli str. K-12 substr. MG1655 b0780 -147 4.8 TTGATATACATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00809 -91 4 TTGATGTCGGTCAG
Salmonella typhimurium LT2 STM0801 -146 4.8 TTGATATATATCAT
Yersinia pestis KIM y3024 -190 4.2 TTGTTTAAAATCAC
Position: -251
Score: 3.8
Sequence: GTGATCTTAATCAC
Position: 10
Score: 4
Sequence: TTGTGAAAAAACAA
Locus tag: PAU_02978
PAU_02978 -251 3.8 GTGATCTTAATCAC
10 4 TTGTGAAAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Citrobacter koseri ATCC BAA-895 CKO_02438 25 3.6 ATGTGAAAAAACAA
Edwardsiella tarda EIB202 ETAE_2588 10 4
Escherichia coli str. K-12 substr. MG1655 b0721 10 3.6 ATGTGAAAAAACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00728 -104 3.6 ATGTGAAAAAACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1426 -127 4 TTGTGAAAAAACAA
Proteus mirabilis HI4320 PMI0565 -2 4 TTGTGAAAAAACAA
Salmonella typhimurium LT2 STM0732 10 3.6 ATGTGAAAAAACAA
Serratia proteamaculans 568 Spro_1263 -249 4.1 GTGATCTAAATCAC
Yersinia pestis KIM y3071 -224 3.8 ATGTTATCAATCAG
Position: -203
Score: 4
Sequence: TTGAAGTAAATCAC
Position: 0
Score: 4.1
Sequence: ATGATTAAAATTAA
Locus tag: PAU_03257
PAU_03257 -203 4 TTGAAGTAAATCAC
0 4.1 ATGATTAAAATTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nqrA
Ortholog function: Na-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00239 0 4.2 ATGATTAAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu1196 -205 4.1 TTGAACTAAATCAC
Proteus mirabilis HI4320 PMI0352 -205 4.2 TTGAGCTAAATCAC
Serratia proteamaculans 568 Spro_0953 0 4.3 ATGATTAAAATCAG
Yersinia pestis KIM y0951 18 4.2 ATGATTAAAATAAA
Position: 15
Score: 3.5
Sequence: ATGACTAACCACAA
Locus tag: PAU_03429
PAU_03429 15 3.5 ATGACTAACCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoC
Ortholog function: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)
Citrobacter koseri ATCC BAA-895 CKO_02731 -267 3.7 TTGTTGATAATTAA
Erwinia amylovora ATCC 49946 EAM_0983 -207 3.7 GTTATTTAAATCAG
Escherichia coli str. K-12 substr. MG1655 b0430 -241 3.7 TTGTTTTATTTCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00392 -49 3.7 TTGAGGTCGTTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3877 -336 3.8 TTGTGAGCTATCAA
Proteus mirabilis HI4320 PMI0106 9 3.6 ATGAAATACATAAA
Salmonella typhimurium LT2 STM0441 -268 3.4 TTTATTGATAATAA
Serratia proteamaculans 568 Spro_1088 -293 3.6 TTCTTTTACATTAA
Yersinia pestis KIM y1019 -223 3.5 TTGTTTTTCCTTAA
Position: 0
Score: 4.1
Sequence: ATGCTATATAACAA
Locus tag: PAU_03647
PAU_03647 0 4.1 ATGCTATATAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltB
Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Escherichia coli str. K-12 substr. MG1655 b3212 -156 3.9 TTGACCTGTATCAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03624 -114 3.9 ATGTTGTACGACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4009 -362 4.1 GTGATATAAATCAC
-334 4.1 CTGATCTATATCAC
Proteus mirabilis HI4320 PMI3677 -353 3.7 TTATCTAACATCAA
-252 4.1 TTTTTATTTATCAA
Serratia proteamaculans 568 Spro_4344 -330 3.6 ATATTAAATATCAA
Yersinia pestis KIM y0128 -72 3.8 CTGTCTGATATCAA
Position: -306
Score: 4.1
Sequence: TTGAAAAAGAACAA
Locus tag: PAU_03741
PAU_03741 -306 4.1 TTGAAAAAGAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpT
Ortholog function: Glycerol-3-phosphate transporter
Citrobacter koseri ATCC BAA-895 CKO_00537 -257 3.7 TCGTTTTTTATCAT
Edwardsiella tarda EIB202 ETAE_3116 -301 3.8 GTGATCAAAATCAC
Enterobacter sp. 638 Ent638_2804 -197 4.2 TTGATTTCGAACAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4166 -249 4.3 TTGATAAAGAGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02646 -214 3.8 TTGATTTCGAGCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu4119 -306 4.2 TTGATAAAGAACAG
Proteus mirabilis HI4320 PMI3591 -287 4 TTGATAATGAGCAA
-45 4.9 TTGTTTAATATCAA
Salmonella typhimurium LT2 STM2283 -256 3.7 TCGTTTTTTATCAT
Serratia proteamaculans 568 Spro_0199 -305 4.3 TTGATAAGGAACAA
Position: -121
Score: 3.9
Sequence: TTGTGATACATCAT
Locus tag: PAU_03742
PAU_03742 -121 3.9 TTGTGATACATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpQ
Ortholog function: Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46)
Citrobacter koseri ATCC BAA-895 CKO_00538 -257 3.7 TCGTTTTTTATCAT
Edwardsiella tarda EIB202 ETAE_3117 -301 3.8 GTGATCAAAATCAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4167 -249 4.3 TTGATAAAGAGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02645 -214 3.8 TTGATTTCGAGCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu4120 -306 4.2 TTGATAAAGAACAG
Proteus mirabilis HI4320 PMI3590 -287 4 TTGATAATGAGCAA
-45 4.9 TTGTTTAATATCAA
Salmonella typhimurium LT2 STM2282 -256 3.7 TCGTTTTTTATCAT
Serratia proteamaculans 568 Spro_0198 -305 4.3 TTGATAAGGAACAA
Position: -329
Score: 3.9
Sequence: CCGATTCATATCAA
Locus tag: PAU_03748
PAU_03748 -329 3.9 CCGATTCATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: frdA
Ortholog function: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Citrobacter koseri ATCC BAA-895 CKO_03678 -151 4 TTAATCAGAATCAA
Enterobacter sp. 638 Ent638_0343 -31 3.6 TTGCGGAATAACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4124 -239 4.1
Proteus mirabilis HI4320 PMI3588 -208 4
Salmonella typhimurium LT2 STM4343 -191 4.4 TTAATCAAAATCAA
Serratia proteamaculans 568 Spro_0419 -63 3.7 TTTATAAATATTAA
Position: -245
Score: 3.7
Sequence: TTGTGTTAGAACAT
Locus tag: PAU_03762
PAU_03762 -245 3.7 TTGTGTTAGAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuA
Ortholog function: Anaerobic C4-dicarboxylate transporter
Photorhabdus luminescens subsp. laumondii TTO1 plu4138 -136 3.7 TTGAATATAATAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4138 -362 4.2 TTGATTTGGATGAA
-198 3.8 ATCACATATATCAA
Position: -161
Score: 4.6
Sequence: TTGTCTTAGATCAA
Locus tag: PAU_04002
PAU_04002 -161 4.6 TTGTCTTAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdD
Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Citrobacter koseri ATCC BAA-895 CKO_03580 -235 4.2 TTGATGCAAATCAC
Edwardsiella tarda EIB202 ETAE_0423 -196 4.7 TTGATTCAGGTCAA
Enterobacter sp. 638 Ent638_0437 -244 4.7 TTGTTCTGAATCAA
-213 4.2 TTGATGCAAATCAC
Erwinia amylovora ATCC 49946 EAM_3059 -106 4.2 TTGCTTCAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0375 -182 4.8 TTGCTCTACATCAA
Escherichia coli str. K-12 substr. MG1655 b4238 -249 4.8 TTGAGCTACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04646 -248 4.2 TTGTTCTGGGTCAA
-217 4.2 TTGATGCAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu4499 -160 4.7 TTGTTTCAGATCAA
Proteus mirabilis HI4320 PMI3451 -184 4.9 TTGATTTAGATCAG
Salmonella typhimurium LT2 STM4452 -249 5 TTGTTCTACATCAA
-218 4.2 TTGATGCAAATCAC
Serratia proteamaculans 568 Spro_0525 -217 4.7 TTGTTCTACGTCAA
Yersinia pestis KIM y0733 -192 4.6 TTGTTCTAGGTCAA
Position: -238
Score: 3.9
Sequence: TTACTTTTTATCAA
Locus tag: PAU_04264
PAU_04264 -238 3.9 TTACTTTTTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pfkA
Ortholog function: 6-phosphofructokinase (EC 2.7.1.11)
Citrobacter koseri ATCC BAA-895 CKO_03085 -132 4 CTGACCTGAATCAA
Edwardsiella tarda EIB202 ETAE_3450 -223 4 CTGACCTGAATCAA
Enterobacter sp. 638 Ent638_4056 -174 4 CTGACCTGAATCAA
Erwinia amylovora ATCC 49946 EAM_0103 -31 4 ATTATTTGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4307 -140 4 CTGACCTGAATCAA
Escherichia coli str. K-12 substr. MG1655 b3916 -125 4 CTGACCTGAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04223 -123 4 CTGACCTGAATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4774 -203 4.1 TTGATCTCAAAAAA
Proteus mirabilis HI4320 PMI3203 -194 3.7 TTAATGCGCATCAA
Salmonella typhimurium LT2 STM4062 -126 4 CTGACCTGAATCAA
Serratia proteamaculans 568 Spro_4807 -145 4.1 GTGACTTGAATCAA
Yersinia pestis KIM y0059 -148 4.2 CTGACTTGAATCAA
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