Propagation of KdgR regulog to Dickeya zeae Ech1591

Reference regulog properties
Source regulog:	KdgR - Enterobacteriales
Regulator type:	Transcription factor
Regulator family:	IclR
Regulation mode:	repressor (activator)
Biological process:	Pectin and polygalacturonate utlization
Effector:	2-keto-3-deoxygluconate
Phylum:	Proteobacteria/gamma
Propagated regulon:
Target genome	Dickeya zeae Ech1591
Orthologous TF(s)	No orthologous TFs found
Regulated genes	21

Built upon 159 sites [see more]

Predicted regulatory interactions in *Dickeya zeae Ech1591*
	Locus tag	Position	Score	Sequence
Position: -94 Score: 5.8 Sequence: TATTGAAACGATGTTTCAATT Locus tag: Dd1591_0065
	Dd1591_0065	-94	5.8	TATTGAAACGATGTTTCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tpfX
Ortholog function: ThiJ/PfpI-family hypothetical protein
Salmonella typhimurium LT2	STM1931	-231	5.4	TTATGAAACATTGTTTCAGAT
Citrobacter koseri ATCC BAA-895	CKO_01049	-199	5.4	TTTTGAAATGATGTTTCATAT
Enterobacter sp. 638	Ent638_2477	-42	5	GGATGAAACGCTGTTTTAAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0102	-85	6.1	TAATAAAACATCGTTTCATTT

Position: -183 Score: 4.5 Sequence: AATTAAAATAAAATGTTGTTT Position: -178 Score: 5.7 Sequence: AAATAAAATGTTGTTTTGTTT Locus tag: Dd1591_0523
	Dd1591_0523	-183	4.5	AATTAAAATAAAATGTTGTTT
		-178	5.7	AAATAAAATGTTGTTTTGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: chmX
Ortholog function: methyl-accepting chemotaxis protein
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3902	-172	4.5	TATTGAAACGTGATTTCTATC

Position: -35 Score: 5.9 Sequence: AAAAGAAACAGTGTTTTATTT Locus tag: Dd1591_0637
	Dd1591_0637	-35	5.9	AAAAGAAACAGTGTTTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dhfX
Ortholog function: putative exported protein
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3785	-32	5.9	AAAAGAAACGATGTTTTATTT

Position: -54 Score: 5.6 Sequence: AAATGAAATAGTGTTTTAAAA Locus tag: Dd1591_1596
	Dd1591_1596	-54	5.6	AAATGAAATAGTGTTTTAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: spiX
Ortholog function: predicted 5-keto-4-deoxyuronate isomerase
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1742	-54	5.1	AATTGAAATACAGTTTTAAAA

Position: -94 Score: 5.7 Sequence: TAATGAAATACCGTTTCAATA Locus tag: Dd1591_1688
	Dd1591_1688	-94	5.7	TAATGAAATACCGTTTCAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppsR
Ortholog function: PEP synthetase regulatory protein
Escherichia coli str. K-12 substr. MG1655	b1703	-131	5.3	AAATGAAATGCTGTTTTCATA
Salmonella typhimurium LT2	STM1348	-131	4.9	AAATGAAACACACTTTTCATT
Citrobacter koseri ATCC BAA-895	CKO_01727	-107	5.5	TATAAAAATAGCGTTTCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02161	-97	5.1	AACAAAAATAGCGTTTCAATT
Enterobacter sp. 638	Ent638_1744	-107	5.3	ATTAAAAACACCATTTCATTT
Serratia proteamaculans 568	Spro_2173	-134	5.2	ATTTGAAATAGTGTTTTACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1852	-94	5.6	TAATGAAATGGCGTTTTAATA

Position: -243 Score: 5.7 Sequence: TATTGAAACGGTATTTCATTA Locus tag: Dd1591_1689
	Dd1591_1689	-243	5.7	TATTGAAACGGTATTTCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppsA
Ortholog function: Phosphoenolpyruvate synthase (EC 2.7.9.2)
Escherichia coli str. K-12 substr. MG1655	b1702	-222	5.3	TATGAAAACAGCATTTCATTT
Salmonella typhimurium LT2	STM1349	-226	4.9	AATGAAAAGTGTGTTTCATTT
Citrobacter koseri ATCC BAA-895	CKO_01725	-249	5.5	AAATGAAACGCTATTTTTATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02160	-254	5.1	AATTGAAACGCTATTTTTGTT
Enterobacter sp. 638	Ent638_1745	-249	5.3	AAATGAAATGGTGTTTTTAAT
Serratia proteamaculans 568	Spro_2174	-364	5.2	AAgTaAAACAcTaTTTCAaaT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1853	-227	5.6	TATTAAAACGCCATTTCATTA

Position: -274 Score: 4.8 Sequence: ATACGGAACGTTGTTTCATTG Locus tag: Dd1591_1702
	Dd1591_1702	-274	4.8	ATACGGAACGTTGTTTCATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: pykF
Ortholog function: Pyruvate kinase (EC 2.7.1.40)
Escherichia coli str. K-12 substr. MG1655	b1676	-286	5	TTTTGAAACGCTGTTTTTGTT
Salmonella typhimurium LT2	STM1378	-286	4.7	TTTTGAAACAGGGTTTTCATT
Citrobacter koseri ATCC BAA-895	CKO_01709	-286	5	TTTTGAAACGCTGTTTTCATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02133	-285	5	ATTTGAAACGAGGTTTTTATT
Enterobacter sp. 638	Ent638_1768	-286	5.1	TTTTGAAACGCCGTTTCCATT
Serratia proteamaculans 568	Spro_2187	-203	4.1	AAtaacAACAcatTTTCATcT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1867	-259	5.1	ATACGGAACGTCGTTTCAATT

Position: -256 Score: 5.8 Sequence: AATAGAAACATTGTTTTATTT Locus tag: Dd1591_1740
	Dd1591_1740	-256	5.8	AATAGAAACATTGTTTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgT
Ortholog function: 2-keto-3-deoxygluconate permease
Escherichia coli str. K-12 substr. MG1655	b3909	-140	6	AAATAAAACAGCGTTTCAATT
Citrobacter koseri ATCC BAA-895	CKO_03092	-147	5.6	AAATGAAACATAGTTTTGTTA

Position: -62 Score: 5.3 Sequence: AATCAAAACAATGTTTCTATT Locus tag: Dd1591_1970
	Dd1591_1970	-62	5.3	AATCAAAACAATGTTTCTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pelW
Ortholog function: Exopolygalacturonate lyase (EC 4.2.2.9)
Yersinia pestis KIM	y1885	-152	4.5	AATCAAAACAACGTTCCGACT
		-76	5.2	GATTGAAACGATGTTTCTATT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2402	-139	4.5	AATCAAAACAACGTTCCGACT
		-61	5.3	AATCAAAACAGTGTTTCTATT

Position: -186 Score: 6.1 Sequence: AAATAAAACATTATTTCATTT Locus tag: Dd1591_1972
	Dd1591_1972	-186	6.1	AAATAAAACATTATTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kduI
Ortholog function: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Escherichia coli str. K-12 substr. MG1655	b2843	-130	6.3	AAATGAAACATTGTTTTATTT
		-63	5.4	AAACGAAACAGTGTTTCACTA
Salmonella typhimurium LT2	STM3018	-123	6.2	AAATGAAACGTTGTTTTATTT
		-58	5.3	AATCAAAACAGTGTTTTGATT
Citrobacter koseri ATCC BAA-895	CKO_04220	-119	6.2	AAATGAAACAACGTTTTATTT
		-51	4.4	AAACGGAACGGTGTTTCGCCT
Enterobacter sp. 638	Ent638_3296	-127	5.4	AACTGAAACAACGTTTTAAAT
		-60	5	AATCGGAACATTGTTTCGTTA
Yersinia pestis KIM	y1887	-201	6	TAATAAAACATCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2400	-209	6.1	AAATAAAACATTATTTCATTT
Edwardsiella tarda EIB202	ETAE_1898	-129	5.6	AATCAAAACAGCATTTCATTT

Position: -156 Score: 6.1 Sequence: AAATGAAATAATGTTTTATTT Locus tag: Dd1591_1973
	Dd1591_1973	-156	6.1	AAATGAAATAATGTTTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgF
Ortholog function: Pectin degradation protein KdgF
Citrobacter koseri ATCC BAA-895	CKO_04218	-38	5.6	AGTTGAAACATTGTTTCAATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03255	-39	5.8	AAATGAAACAATGTTTCACTT
Enterobacter sp. 638	Ent638_3287	-38	5.5	AATTAAAACAATGTTTCACTA
Yersinia pestis KIM	y1888	-155	6	AAATGAAATGATGTTTTATTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2399	-174	6.1	AAATGAAATAATGTTTTATTT

Position: -87 Score: 5.1 Sequence: AATTGAAACGGACTTTCGTTT Locus tag: Dd1591_2427
	Dd1591_2427	-87	5.1	AATTGAAACGGACTTTCGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sotA
Ortholog function: sugar efflux transporter
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2730	-88	5	TAATGAAACAAGATTTCTGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2730	-88	5	TAATGAAACAAGATTTCTGTT

Position: -2 Score: 5.8 Sequence: AAATGAAACATTGTTTTACTT Locus tag: Dd1591_3030
	Dd1591_3030	-2	5.8	AAATGAAACATTGTTTTACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pehN
Ortholog function: putative polygalacturonase
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1190	-37	5.7	TATTAAAACGATATTTCATTA

Position: -39 Score: 5.8 Sequence: AAATGAAATAATGTTTTAATA Locus tag: Dd1591_3365
	Dd1591_3365	-39	5.8	AAATGAAATAATGTTTTAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: togT
Ortholog function: Oligogalacturonide transporter
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02398	-46	5.2	TATAAAAACAGTGTTTCAAAA
Yersinia pestis KIM	y2961	-47	4.5	AAAGAAAACAGTTATTCATTA
		-25	6.1	AAATGAAACATTGTTTTAATT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0817	-60	4.5	TAAAGAAATGATAGTTCAATC
		-38	5.5	AACTGAAATATTGTTTCATAT

Position: -65 Score: 6.1 Sequence: AAATAAAACGGCGTTTCATTA Locus tag: Dd1591_3508
	Dd1591_3508	-65	6.1	AAATAAAACGGCGTTTCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygjV
Ortholog function: putative transport protein
Escherichia coli str. K-12 substr. MG1655	b3090	-64	5.4	ATAAAAAACGGCGTTTCATAA
Yersinia pestis KIM	y3597	-133	5.2	ATATGAAACGGTGTTCTGTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0648	-70	6.2	AAATAAAACGGCGTTTCATTT

Position: -42 Score: 5.4 Sequence: AATCAAAACATTGTTTCAGTT Locus tag: Dd1591_3734
	Dd1591_3734	-42	5.4	AATCAAAACATTGTTTCAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjgK
Ortholog function: cytoplasmic protein involved in polygalacturonate utilization
Escherichia coli str. K-12 substr. MG1655	b4252	-35	6	AAATGAAACGTTGTTTTAATT
Salmonella typhimurium LT2	STM4468	-32	5.7	AAATAAAACGCTGTTTTAACT
Citrobacter koseri ATCC BAA-895	CKO_03553	-33	6.2	AAATGAAACGTTGTTTTATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04658	-33	5.8	AAATGAAATGCTGTTTTATAT
Enterobacter sp. 638	Ent638_0453	-34	6	AAATGAAACATTGTTTTATAT
Yersinia pestis KIM	y0739	-41	5.9	TAATAAAACAGCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0383	-41	5.1	TTGTAAAACAGGGTTTCATTT
Edwardsiella tarda EIB202	ETAE_3112	-39	5.6	AAATAAAACGCAGTTTTATAA

Position: -103 Score: 5.8 Sequence: AAATAAAACATCGTTTCATCA Locus tag: Dd1591_4075
	Dd1591_4075	-103	5.8	AAATAAAACATCGTTTCATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgK
Ortholog function: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Yersinia pestis KIM	y3838	-225	5.1	ATTTAAAACACCGTTTTAATC
Serratia proteamaculans 568	Spro_4750	-105	6.2	AAATAAAACGTTGTTTTATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4360	-125	5.4	AAATAAAACATCGTTTCAAGA
Edwardsiella tarda EIB202	ETAE_3377	-91	5.4	AAACAGAACGTTGTTTTATTT

Position: -66 Score: 6 Sequence: AAAAGAAACAGTGTTTCATTT Locus tag: Dd1591_4196
	Dd1591_4196	-66	6	AAAAGAAACAGTGTTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pelX
Ortholog function: Pectate disaccharide-lyase
Enterobacter sp. 638	Ent638_4134	-102	5.2	AAGCAAAACAACGTTTTAATT
		-60	5.7	AAAAGAAACGACGTTTCATCT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4510	-130	5.3	AAATGACACGGTGTTTCATAA
		-113	4.2	ATAAAAAACAGACTTTATTTT
		-66	6	AAAAGAAACAGCGTTTCATTT

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of KdgR regulog to Dickeya zeae Ech1591

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --