Propagation of Fnr regulog to Yersinia pseudotuberculosis YPIII
| Source regulog: | Fnr - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Energy metabolism; Anaerobic metabolism |
| Effector: | Oxygen |
| Phylum: | Gammaproteobacteria |
| Propagated regulon: | |
| Target genome | Yersinia pseudotuberculosis YPIII |
| Orthologous TF(s) | YPK_1944 |
| Regulated genes | 72 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -25
Score: 4.2 Sequence: ATGCTATTAATCAA
Locus tag: YPK_0147
|
||||
| YPK_0147 | -25 | 4.2 | ATGCTATTAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glgB | ||||
| Ortholog function: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) | ||||
| Edwardsiella tarda EIB202 | ETAE_3307 | -153 | 4.8 | TTCATTTATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4151 | -38 | 4.2 | TTTATTTAATTCAA |
| Yersinia pestis KIM | y3886 | -25 | 4.2 | ATGCTATTAATCAA |
|
Position: -32
Score: 3.7 Sequence: TTGATTTTAATTTA
Position: -22
Score: 3.8 Sequence: TTTATTGATATCAC
Locus tag: YPK_0168
|
||||
| YPK_0168 | -32 | 3.7 | TTGATTTTAATTTA | |
| -22 | 3.8 | TTTATTGATATCAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoB | ||||
| Ortholog function: Ferrous iron transport protein B | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04831 | -204 | 4.1 | TTGAGCCATGTCAA |
| Enterobacter sp. 638 | Ent638_3822 | -133 | 4.2 | TTGAGCAAGGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3409 | -203 | 4.4 | TTGAGCCACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03779 | -198 | 3.8 | TTGCGGCATATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0208 | -206 | 3.5 | TGGATGCAAATCAT |
| Proteus mirabilis HI4320 | PMI2921 | -190 | 5.2 | TTGATGTACATCAA |
| Salmonella typhimurium LT2 | STM3506 | -204 | 4.4 | TTGAGCCATATCAA |
| Serratia proteamaculans 568 | Spro_4629 | -284 | 3.8 | CTGATTTAACTCAC |
| Yersinia pestis KIM | y3911 | -93 | 4 | ATTATTTAAATCAT |
|
Position: -93
Score: 4 Sequence: ATTATTTAAATCAT
Locus tag: YPK_0169
|
||||
| YPK_0169 | -93 | 4 | ATTATTTAAATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoA | ||||
| Ortholog function: Ferrous iron transport protein A | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04830 | -204 | 4.1 | TTGAGCCATGTCAA |
| Enterobacter sp. 638 | Ent638_3821 | -133 | 4.2 | TTGAGCAAGGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3408 | -203 | 4.4 | TTGAGCCACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03778 | -198 | 3.8 | TTGCGGCATATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0209 | -206 | 3.5 | TGGATGCAAATCAT |
| Proteus mirabilis HI4320 | PMI2920 | -190 | 5.2 | TTGATGTACATCAA |
| Salmonella typhimurium LT2 | STM3505 | -204 | 4.4 | TTGAGCCATATCAA |
| Serratia proteamaculans 568 | Spro_4628 | -284 | 3.8 | CTGATTTAACTCAC |
| Yersinia pestis KIM | y3912 | -93 | 4 | ATTATTTAAATCAT |
|
Position: -3
Score: 3.8 Sequence: ATGATGACAATCAG
Locus tag: YPK_0423
|
||||
| YPK_0423 | -3 | 3.8 | ATGATGACAATCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ssuC | ||||
| Ortholog function: Alkanesulfonates transport system permease protein | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02127 | -43 | 3.7 | TTAATGAAAATCGA |
| Enterobacter sp. 638 | Ent638_1453 | -181 | 3.5 | TTGACCTGAGGCAA |
| Erwinia amylovora ATCC 49946 | EAM_1362 | 9 | 3.7 | TTGTCTAAAGTCAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4412 | -102 | 3.6 | TTGAGATTTAAAAA |
| Escherichia coli str. K-12 substr. MG1655 | b0934 | -278 | 3.6 | GCCATTTAAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00970 | -182 | 3.8 | TTGACCTGCGACAA |
| Serratia proteamaculans 568 | Spro_1736 | -256 | 4.6 | TTGATTAAAAGCAA |
| Yersinia pestis KIM | y0243 | 0 | 3.8 | ATGATGACAATCAG |
|
Position: -5
Score: 4.2 Sequence: TTGATATGAGTCAG
Locus tag: YPK_0529
|
||||
| YPK_0529 | -5 | 4.2 | TTGATATGAGTCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltD | ||||
| Ortholog function: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3213 | -156 | 3.9 | TTGACCTGTATCAG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03625 | -114 | 3.9 | ATGTTGTACGACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4010 | -362 | 4.1 | GTGATATAAATCAC |
| -334 | 4.1 | CTGATCTATATCAC | ||
| Proteus mirabilis HI4320 | PMI3676 | -353 | 3.7 | TTATCTAACATCAA |
| -252 | 4.1 | TTTTTATTTATCAA | ||
| Serratia proteamaculans 568 | Spro_4345 | -330 | 3.6 | ATATTAAATATCAA |
| Yersinia pestis KIM | y0129 | -72 | 3.8 | CTGTCTGATATCAA |
|
Position: -72
Score: 3.8 Sequence: CTGTCTGATATCAA
Locus tag: YPK_0530
|
||||
| YPK_0530 | -72 | 3.8 | CTGTCTGATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltB | ||||
| Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3212 | -156 | 3.9 | TTGACCTGTATCAG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03624 | -114 | 3.9 | ATGTTGTACGACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4009 | -362 | 4.1 | GTGATATAAATCAC |
| -334 | 4.1 | CTGATCTATATCAC | ||
| Proteus mirabilis HI4320 | PMI3677 | -353 | 3.7 | TTATCTAACATCAA |
| -252 | 4.1 | TTTTTATTTATCAA | ||
| Serratia proteamaculans 568 | Spro_4344 | -330 | 3.6 | ATATTAAATATCAA |
| Yersinia pestis KIM | y0128 | -72 | 3.8 | CTGTCTGATATCAA |
|
Position: -133
Score: 4.1 Sequence: TTGATCTCTGTCAT
Locus tag: YPK_0531
|
||||
| YPK_0531 | -133 | 4.1 | TTGATCTCTGTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhcC | ||||
| Ortholog function: COG1242: Predicted Fe-S oxidoreductase | ||||
| Enterobacter sp. 638 | Ent638_3655 | -65 | 3.7 | TTTATTCAAATGAA |
| -32 | 4 | TTGATCCAGGTCAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0313 | -70 | 3.7 | TTGATCGCGGTCAT |
| Escherichia coli str. K-12 substr. MG1655 | b3211 | -75 | 4 | TTGATCCAGGTCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03623 | -75 | 4 | TTGATCCAGGTCAT |
| Salmonella typhimurium LT2 | STM3329 | -75 | 4 | TTGATCCAGGTCAT |
| Serratia proteamaculans 568 | Spro_4343 | -74 | 4.2 | TTGATCTCTGTCAT |
| Yersinia pestis KIM | y0127 | -133 | 4.2 | TTGATCTCTGTCAT |
|
Position: -225
Score: 3.8 Sequence: TTGAGTGACATCAC
Locus tag: YPK_0554
|
||||
| YPK_0554 | -225 | 3.8 | TTGAGTGACATCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uxaC | ||||
| Ortholog function: Uronate isomerase (EC 5.3.1.12) | ||||
| Serratia proteamaculans 568 | Spro_4321 | -227 | 3.9 | TTGAGTGATATCAC |
| Yersinia pestis KIM | y3600 | -225 | 3.8 | TTGAGTGACATCAC |
|
Position: -238
Score: 5.1 Sequence: TTGATTCAAATCAA
Position: -185
Score: 4.7 Sequence: ATGTTTTATATCAA
Locus tag: YPK_1173
|
||||
| YPK_1173 | -238 | 5.1 | TTGATTCAAATCAA | |
| -185 | 4.7 | ATGTTTTATATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ung | ||||
| Ortholog function: Uracil-DNA glycosylase (EC 3.2.2.27) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00204 | -209 | 5.6 | TTGATTTAAATCAA |
| -156 | 5.1 | TTGTTTTACATCAA | ||
| Edwardsiella tarda EIB202 | ETAE_2734 | -396 | 4.1 | TTGAGATAGAGCAA |
| -280 | 5.4 | TTGATCTAAATCAA | ||
| -227 | 4.7 | ATGTTTTACATCAA | ||
| Enterobacter sp. 638 | Ent638_3065 | -194 | 5 | TTGACCTAAATCAA |
| -142 | 5.1 | TTGTTTTATATCAA | ||
| 34 | 4.2 | CTGATGAAAAACAA | ||
| Erwinia amylovora ATCC 49946 | EAM_2526 | -177 | 4.9 | TTGATGCAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3289 | -228 | 5.1 | TTGACTTAAATCAA |
| -175 | 5.1 | TTGTTTTATATCAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b2580 | -197 | 5.6 | TTGATTTAAATCAA |
| -144 | 5.1 | TTGTTTTACATCAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02903 | -206 | 5.5 | TTGATATAAATCAA |
| -153 | 5.1 | TTGTTTTACATCAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3371 | -233 | 4.1 | TTGATTCAGAACAG |
| Proteus mirabilis HI4320 | PMI1899 | -221 | 5.1 | TTGATAAATATCAA |
| -168 | 5.2 | TTGTTTTAAATCAA | ||
| Salmonella typhimurium LT2 | STM2647 | -208 | 5.6 | TTGATTTAAATCAA |
| -155 | 5.1 | TTGTTTTACATCAA | ||
| Serratia proteamaculans 568 | Spro_3683 | -222 | 5 | TTGATTAAAGTCAA |
| -169 | 4.4 | ATGTTTTATGTCAA | ||
| Yersinia pestis KIM | y1281 | -213 | 5.2 | TTGATTCAAATCAA |
| -160 | 4.7 | ATGTTTTATATCAA | ||
|
Position: -180
Score: 4.6 Sequence: TTGATATAAAACAT
Position: -127
Score: 5.1 Sequence: TTGATTTGAATCAA
Locus tag: YPK_1174
|
||||
| YPK_1174 | -180 | 4.6 | TTGATATAAAACAT | |
| -127 | 5.1 | TTGATTTGAATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfiD | ||||
| Ortholog function: Stress-induced alternate pyruvate formate-lyase subunit | ||||
| Edwardsiella tarda EIB202 | ETAE_2732 | -27 | 4.3 | TTGCTCTATCTCAA |
| Proteus mirabilis HI4320 | PMI1898 | -180 | 5.2 | TTGATTTAAAACAA |
| -127 | 5.1 | TTGATATTTATCAA | ||
| Serratia proteamaculans 568 | Spro_3682 | -189 | 4.2 | TTGACATAAAACAT |
| -136 | 4.9 | TTGACTTTAATCAA | ||
| Yersinia pestis KIM | y1282 | -180 | 4.6 | TTGATATAAAACAT |
| -127 | 5.1 | TTGATTTGAATCAA | ||
|
Position: -350
Score: 4.5 Sequence: CTGATTCAGATCAA
Locus tag: YPK_1351
|
||||
| YPK_1351 | -350 | 4.5 | CTGATTCAGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purM | ||||
| Ortholog function: Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) | ||||
| Edwardsiella tarda EIB202 | ETAE_1086 | -186 | 4.7 | ATGATCTCAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1254 | -198 | 4.3 | CTGATCCAGATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b2499 | -243 | 4.6 | TTGACTTTAGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2760 | -137 | 5.2 | TTGATTTTCATCAA |
| Proteus mirabilis HI4320 | PMI1575 | -148 | 5 | TTGATATTGATCAA |
| Salmonella typhimurium LT2 | STM2499.S | -309 | 4.4 | TTGACCTGGATCAA |
| Yersinia pestis KIM | y1407 | -312 | 4.5 | CTGATTCAGATCAA |
| -274 | 3.7 | ATGCTAAAAATCAG | ||
|
Position: -98
Score: 4.4 Sequence: TTGATCTGAATCAG
Locus tag: YPK_1352
|
||||
| YPK_1352 | -98 | 4.4 | TTGATCTGAATCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: upp | ||||
| Ortholog function: Uracil phosphoribosyltransferase (EC 2.4.2.9) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00293 | -103 | 4.6 | TTGATCCATGTCAA |
| Edwardsiella tarda EIB202 | ETAE_1087 | -97 | 4.5 | TTGATTGAGATCAT |
| Enterobacter sp. 638 | Ent638_2986 | -97 | 4.4 | TTGATCACCGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1255 | -169 | 4.3 | TTGATCTGGATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b2498 | -95 | 4.6 | TTGACTAAAGTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02821 | -96 | 5 | TTGATATACGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2759 | -103 | 5.1 | TTGATGAAAATCAA |
| Proteus mirabilis HI4320 | PMI1574 | -97 | 5.1 | TTGATCAATATCAA |
| Salmonella typhimurium LT2 | STM2498 | -103 | 4.6 | TTGATCCAGGTCAA |
| Yersinia pestis KIM | y1408 | -98 | 4.4 | TTGATCTGAATCAG |
|
Position: -281
Score: 3.3 Sequence: GTTATATATATTAA
Position: -211
Score: 3.7 Sequence: TTGATCTTGCGCAA
Position: -198
Score: 3.7 Sequence: ATGTCTACCATCAA
Position: -119
Score: 3.4 Sequence: TTTATTTTAATAAT
Position: -114
Score: 3.2 Sequence: TTTAATAATATAAA
Locus tag: YPK_1385
|
||||
| YPK_1385 | -281 | 3.3 | GTTATATATATTAA | |
| -211 | 3.7 | TTGATCTTGCGCAA | ||
| -198 | 3.7 | ATGTCTACCATCAA | ||
| -119 | 3.4 | TTTATTTTAATAAT | ||
| -114 | 3.2 | TTTAATAATATAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napF | ||||
| Ortholog function: Ferredoxin-type protein NapF (periplasmic nitrate reductase) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2208 | -46 | 3.2 | TTGGTCGCTCTCAA |
| Salmonella typhimurium LT2 | STM2261 | -90 | 3.3 | CTTATTTACAAAAA |
|
Position: -302
Score: 4 Sequence: TGGATTTTTAACAA
Locus tag: YPK_1496
|
||||
| YPK_1496 | -302 | 4 | TGGATTTTTAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccmA | ||||
| Ortholog function: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00574 | -35 | 3.4 | TTGCCCGACATCAG |
| Edwardsiella tarda EIB202 | ETAE_2461 | -396 | 4.3 | TTGCTATATATCAG |
| 5 | 3.5 | GCGATTAAAATCAG | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1882 | -106 | 4.4 | TTGATCTCAATAAA |
| Escherichia coli str. K-12 substr. MG1655 | b2201 | -46 | 3.2 | TTGGTCGCTCTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02081 | -326 | 3.4 | GTGATACAAGTCAC |
| Salmonella typhimurium LT2 | STM2254 | -90 | 3.3 | CTTATTTACAAAAA |
| Salmonella typhimurium LT2 | STM3819 | -110 | 4.7 | TTGATACCAATCAA |
| Yersinia pestis KIM | y1567 | -302 | 4 | TGGATTTTTAACAA |
|
Position: 12
Score: 3.6 Sequence: CTGATAGTCATCAT
Locus tag: YPK_1504
|
||||
| YPK_1504 | 12 | 3.6 | CTGATAGTCATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccmH | ||||
| Ortholog function: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00583 | -19 | 3.3 | TTTATAAGGATAAA |
| Edwardsiella tarda EIB202 | ETAE_2454 | -114 | 3.5 | TTATTGTATATAAA |
| Edwardsiella tarda EIB202 | ETAE_2453 | -114 | 3.5 | TTATTGTATATAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1889 | -106 | 4.4 | TTGATCTCAATAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1890 | -106 | 4.4 | TTGATCTCAATAAA |
| Escherichia coli str. K-12 substr. MG1655 | b2194 | -46 | 3.2 | TTGGTCGCTCTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02074 | -326 | 3.4 | GTGATACAAGTCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02073 | -326 | 3.4 | GTGATACAAGTCAC |
| Salmonella typhimurium LT2 | STM2247 | -90 | 3.3 | CTTATTTACAAAAA |
| Salmonella typhimurium LT2 | STM3812 | -110 | 4.7 | TTGATACCAATCAA |
| Yersinia pestis KIM | y1575 | 12 | 3.6 | CTGATAGTCATCAT |
| Yersinia pestis KIM | y1574 | -302 | 4 | TGGATTTTTAACAA |
|
Position: -232
Score: 3.6 Sequence: TCGACTTTTATCAT
Position: -163
Score: 4.1 Sequence: ATGATGTTAATCAT
Position: -154
Score: 3.8 Sequence: ATCATTAATGTCAA
Locus tag: YPK_1551
|
||||
| YPK_1551 | -232 | 3.6 | TCGACTTTTATCAT | |
| -163 | 4.1 | ATGATGTTAATCAT | ||
| -154 | 3.8 | ATCATTAATGTCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ackA | ||||
| Ortholog function: Acetate kinase (EC 2.7.2.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00498 | -92 | 4.1 | ATGATGTTAATCAT |
| Edwardsiella tarda EIB202 | ETAE_2397 | -93 | 4.1 | ATGATGTTAATCAT |
| Enterobacter sp. 638 | Ent638_2840 | -92 | 4.1 | ATGATGTTAATCAT |
| Erwinia amylovora ATCC 49946 | EAM_2301 | -119 | 3.9 | TTGCTTTCGGACAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3039 | -91 | 4.1 | ATGATGTTAATCAT |
| Escherichia coli str. K-12 substr. MG1655 | b2296 | -92 | 4.1 | ATGATGTTAATCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02687 | -91 | 4.1 | ATGATGTTAATCAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3095 | -117 | 4.1 | ATGATGTTAATCAT |
| Proteus mirabilis HI4320 | PMI1771 | -165 | 3.7 | TTGATGATTGGCAA |
| Salmonella typhimurium LT2 | STM2337 | -92 | 4.1 | ATGATGTTAATCAT |
| Serratia proteamaculans 568 | Spro_3316 | -121 | 4.1 | ATGATGTTAATCAT |
| Yersinia pestis KIM | y1622 | -163 | 4.1 | ATGATGTTAATCAT |
|
Position: 8
Score: 3.7 Sequence: ATTATATTTAACAA
Locus tag: YPK_1570
|
||||
| YPK_1570 | 8 | 3.7 | ATTATATTTAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nuoL | ||||
| Ortholog function: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00518 | -198 | 4 | TCGATGTAAATTAA |
| Edwardsiella tarda EIB202 | ETAE_2375 | -292 | 3.7 | TTGATGTAAACGAA |
| Escherichia coli str. K-12 substr. MG1655 | b2278 | -433 | 3.7 | ATGATGTTAAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02668 | -392 | 3.6 | TTGATTTACGACGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3079 | -207 | 3.8 | TTGTTATTTGTAAA |
| Salmonella typhimurium LT2 | STM2318 | -199 | 4.6 | TTGATGTAAATTAA |
| Serratia proteamaculans 568 | Spro_3298 | -280 | 3.8 | TTTCTACACATCAA |
| Yersinia pestis KIM | y1640 | -465 | 3.6 | TTTTATTAAAACAA |
|
Position: -148
Score: 5.3 Sequence: TTGATATATATCAA
Locus tag: YPK_1702
|
||||
| YPK_1702 | -148 | 5.3 | TTGATATATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ndh | ||||
| Ortholog function: NADH dehydrogenase (EC 1.6.99.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01946 | -163 | 5.2 | TTGATGTACATCAA |
| Edwardsiella tarda EIB202 | ETAE_2070 | -162 | 5.1 | TTGATTTGAATCAA |
| Enterobacter sp. 638 | Ent638_1624 | -149 | 5.1 | TTGATTCATATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1473 | -146 | 4.2 | TTGACCAGCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1815 | -149 | 5.4 | TTGATATATATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1109 | -150 | 5.2 | TTGATTAACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01106 | -148 | 4.8 | TTGATGCACATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2821 | -150 | 4.2 | TTGATGTTGTTCAA |
| Proteus mirabilis HI4320 | PMI0875 | -153 | 5.5 | TTGATATAAATCAA |
| Salmonella typhimurium LT2 | STM1211 | -150 | 4.8 | TTGATGCACATCAA |
| Serratia proteamaculans 568 | Spro_1926 | -149 | 5.2 | TTGATGTACATCAA |
| Yersinia pestis KIM | y1777 | -148 | 5.4 | TTGATATATATCAA |
|
Position: -53
Score: 4 Sequence: TTGATCATGATCAC
Locus tag: YPK_1712
|
||||
| YPK_1712 | -53 | 4 | TTGATCATGATCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pepT | ||||
| Ortholog function: Tripeptide aminopeptidase (EC 3.4.11.4) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01926 | -42 | 3.3 | TTGCTTATTAATAA |
| Escherichia coli str. K-12 substr. MG1655 | b1127 | -121 | 3.7 | TTTATATTCATTAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01133 | -347 | 3.5 | TTGTTGATGGTCAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2810 | -156 | 3.8 | TTGATGAAAAGCAT |
| Proteus mirabilis HI4320 | PMI0882 | -92 | 3.7 | TTGATTTAATTAAT |
| Salmonella typhimurium LT2 | STM1227 | -375 | 4.1 | TTGTTAATGGTCAA |
| Serratia proteamaculans 568 | Spro_2009 | -96 | 3.6 | ATGATTTCCGTTAA |
| Yersinia pestis KIM | y1791 | -23 | 4 | TTGATCATGATCAC |
|
Position: -3
Score: 4.2 Sequence: TTGATGGAAAGCAA
Locus tag: YPK_1723
|
||||
| YPK_1723 | -3 | 4.2 | TTGATGGAAAGCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: icdA | ||||
| Ortholog function: Isocitrate dehydrogenase (EC 1.1.1.42) | ||||
| Edwardsiella tarda EIB202 | ETAE_2050 | -73 | 3.9 | TTTTATTAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2439 | -158 | 3.7 | GTGATTTTTAACAG |
| Escherichia coli str. K-12 substr. MG1655 | b1136 | -89 | 3.6 | TTGCTCTAAAGCAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2801 | -249 | 4.8 | TTGTTAAATATCAA |
| Serratia proteamaculans 568 | Spro_2025 | -3 | 4.3 | TTGATGGAAAGCAA |
| Yersinia pestis KIM | y1802 | -106 | 3.7 | GTGATTTTTAACAG |
|
Position: -32
Score: 4.4 Sequence: TTGACGCATATCAA
Locus tag: YPK_1944
|
||||
| YPK_1944 | -32 | 4.4 | TTGACGCATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fnr | ||||
| Ortholog function: Fumarate and nitrate reduction regulatory protein | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01409 | -83 | 3.8 | TTGATGTAAAGTAA |
| Edwardsiella tarda EIB202 | ETAE_1744 | -133 | 3.4 | GTGCTATACATCAC |
| -33 | 4.6 | TTGACCGATATCAA | ||
| Enterobacter sp. 638 | Ent638_1853 | -33 | 4.6 | TTGACCAATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2207 | -34 | 4.6 | TTGACCAATATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1334 | -33 | 4.7 | TTGACAAATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01530 | -327 | 4.6 | TTGACCAATATCAA |
| -185 | 3.5 | ATGAGCTTGATCAG | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2179 | -35 | 3.4 | TTGAAGGATATGAA |
| Proteus mirabilis HI4320 | PMI1203 | -40 | 4.5 | TTGACACATATCAA |
| Salmonella typhimurium LT2 | STM1660.S | -33 | 4.7 | TTGACAAATATCAA |
| Serratia proteamaculans 568 | Spro_2582 | -34 | 4.4 | TTGACGCATATCAA |
| Yersinia pestis KIM | y2132 | -32 | 4.4 | TTGACGCATATCAA |
|
Position: -159
Score: 4.4 Sequence: ATGATCCAGATCAA
Locus tag: YPK_2049
|
||||
| YPK_2049 | -159 | 4.4 | ATGATCCAGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: outer membrane protein W; colicin S4 receptor; putative transporter | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01333 | -117 | 4.1 | TTAATCTGGATCAA |
| Edwardsiella tarda EIB202 | ETAE_1528 | -157 | 4.9 | TTGATGTCTATCAA |
| Enterobacter sp. 638 | Ent638_2283 | -117 | 4.1 | TTAATCTGGATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1884 | -160 | 5.4 | TTGATCTAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2303 | -160 | 4.8 | TTGATCTGGATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1256 | -162 | 4.8 | TTGATTTAAATCAC |
| -117 | 4.1 | TTAATCCAGATCAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01248 | -247 | 4.2 | TTGATTTCACTCAT |
| -80 | 4.1 | TTAATCTGGATCAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2478 | -160 | 5 | TTGATTTGGATCAA |
| Proteus mirabilis HI4320 | PMI1350 | -164 | 4.8 | TTGATGTGGATCAA |
| Salmonella typhimurium LT2 | STM1732 | -117 | 4.1 | TTAATCTGGATCAA |
| Serratia proteamaculans 568 | Spro_2674 | -131 | 5 | TTGATTCAGATCAA |
| Yersinia pestis KIM | y2044 | -171 | 3.6 | ATGATAAATGGCAA |
| -147 | 4.4 | ATGATCCAGATCAA | ||
|
Position: -282
Score: 4.2 Sequence: GTGATTTAAATCAC
Locus tag: YPK_2072
|
||||
| YPK_2072 | -282 | 4.2 | GTGATTTAAATCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhE | ||||
| Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01318 | -238 | 4.1 | TTGATCTGGATCAC |
| Enterobacter sp. 638 | Ent638_2304 | -249 | 4.5 | TTGATTCAGATCAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2326 | -311 | 3.6 | TCGATGTTGATCAC |
| -305 | 3.8 | TTGATCACAAAAAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b1241 | -237 | 4.3 | TTGATTTGGATCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02199 | -233 | 4.7 | TTGATCTAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2496 | -134 | 4.5 | GTGATTAAGATCAA |
| Proteus mirabilis HI4320 | PMI1486 | -242 | 3.8 | GTGATGTAGATCAC |
| Salmonella typhimurium LT2 | STM1749 | -238 | 4.7 | TTGATTTAGATCAC |
| Serratia proteamaculans 568 | Spro_2704 | -274 | 4.4 | ATGATTTAAATCAC |
|
Position: -301
Score: 3.6 Sequence: TTGCTGTGTATAAA
Position: -202
Score: 3.8 Sequence: TTGATATATATATA
Locus tag: YPK_2578
|
||||
| YPK_2578 | -301 | 3.6 | TTGCTGTGTATAAA | |
| -202 | 3.8 | TTGATATATATATA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moeA | ||||
| Ortholog function: Molybdopterin biosynthesis protein MoeA | ||||
| Edwardsiella tarda EIB202 | ETAE_1153 | -335 | 3.8 | ATGATACAGATCAC |
| Enterobacter sp. 638 | Ent638_1321 | -155 | 3.3 | TCTATAAATATCAT |
| Erwinia amylovora ATCC 49946 | EAM_1284 | -244 | 3.5 | CTGTGATAAATCAG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2836 | -383 | 3.7 | ATGATGTAAAGCAG |
| Escherichia coli str. K-12 substr. MG1655 | b0827 | 18 | 3.7 | TTGATGTCGCTCGA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1540 | -244 | 3.9 | TTGACAGTGGTCAA |
| Proteus mirabilis HI4320 | PMI0637 | -182 | 3.7 | TTAAAATACAACAA |
| Yersinia pestis KIM | y2673 | -202 | 3.8 | TTGATATATATATA |
|
Position: 0
Score: 3.6 Sequence: ATGAAATATATAAA
Locus tag: YPK_2674
|
||||
| YPK_2674 | 0 | 3.6 | ATGAAATATATAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ansB | ||||
| Ortholog function: L-asparaginase (EC 3.5.1.1) | ||||
| Edwardsiella tarda EIB202 | ETAE_2179 | 0 | 3.7 | ATGAAGTTAGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b2957 | -71 | 4.5 | TTGTTTAACGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1616 | -55 | 3.7 | TTTATTGTTATCAT |
| Proteus mirabilis HI4320 | PMI0708 | -139 | 4.2 | TTGATTTTAAATAA |
| Yersinia pestis KIM | y2787 | 0 | 3.6 | ATGAAATATATAAA |
|
Position: -80
Score: 4.5 Sequence: ATGATCCATATCAA
Locus tag: YPK_2676
|
||||
| YPK_2676 | -80 | 4.5 | ATGATCCATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: focA | ||||
| Ortholog function: Formate efflux transporter (TC 2.A.44 family) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02167 | -116 | 4.9 | ATGATCTATATCAA |
| Edwardsiella tarda EIB202 | ETAE_2181 | -117 | 4.2 | ATGATCCATGTCAA |
| Enterobacter sp. 638 | Ent638_1424 | -74 | 4.9 | ATGATCTATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2596 | -228 | 4 | ATGATTTTTATTAA |
| -75 | 4.5 | ATGATCCACATCAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b0904 | -74 | 4.9 | ATGATCTATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00932 | -117 | 4.9 | ATGATCTATATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1614 | -267 | 4.1 | TTTATTTGCAACAA |
| -159 | 4.7 | TTTATTAAAATCAA | ||
| -84 | 4.9 | ATGATCTATATCAA | ||
| Proteus mirabilis HI4320 | PMI0706 | -159 | 4.1 | TTATTATTAATCAA |
| -85 | 4.5 | ATGATCCATATCAA | ||
| Salmonella typhimurium LT2 | STM0974 | -74 | 4.9 | ATGATCTATATCAA |
| Serratia proteamaculans 568 | Spro_1703 | -143 | 3.9 | ATAATTTAACTCAA |
| -81 | 4.6 | ATGATCCAAATCAA | ||
| Yersinia pestis KIM | y2789 | -80 | 4.5 | ATGATCCATATCAA |
|
Position: -114
Score: 4.1 Sequence: TTGCGTCAAATCAA
Locus tag: YPK_2701
|
||||
| YPK_2701 | -114 | 4.1 | TTGCGTCAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hcp | ||||
| Ortholog function: Hydroxylamine reductase (EC 1.7.-.-) | ||||
| Edwardsiella tarda EIB202 | ETAE_2215 | -113 | 4.4 | TTGCGTTATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2662 | -114 | 4.4 | TTGCGCTAAATCAA |
| Proteus mirabilis HI4320 | PMI2112 | -131 | 4.4 | TTGCGTTAGATCAA |
| Serratia proteamaculans 568 | Spro_1666 | -66 | 4.4 | TTGCGCTAAATCAA |
| Yersinia pestis KIM | y2819 | -115 | 4.1 | TTGCGTCAAATCAA |
|
Position: -314
Score: 5.1 Sequence: TTGTTCTAAATCAA
Position: -263
Score: 4.4 Sequence: TTGTCGTAGATCAA
Locus tag: YPK_2964
|
||||
| YPK_2964 | -314 | 5.1 | TTGTTCTAAATCAA | |
| -263 | 4.4 | TTGTCGTAGATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cydA | ||||
| Ortholog function: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) | ||||
| Proteus mirabilis HI4320 | PMI0573 | -312 | 4.5 | TTGATGTGGGTCAA |
| Yersinia pestis KIM | y3063 | -314 | 5.1 | TTGTTCTAAATCAA |
| -263 | 4.4 | TTGTCGTAGATCAA | ||
|
Position: -299
Score: 3.7 Sequence: TTATTCTTTGTCAA
Position: -224
Score: 3.8 Sequence: ATGTTATCAATCAG
Locus tag: YPK_2972
|
||||
| YPK_2972 | -299 | 3.7 | TTATTCTTTGTCAA | |
| -224 | 3.8 | ATGTTATCAATCAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdhC | ||||
| Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02438 | 25 | 3.6 | ATGTGAAAAAACAA |
| Edwardsiella tarda EIB202 | ETAE_2588 | 10 | 4 | |
| Escherichia coli str. K-12 substr. MG1655 | b0721 | 10 | 3.6 | ATGTGAAAAAACAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00728 | -104 | 3.6 | ATGTGAAAAAACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1426 | -127 | 4 | TTGTGAAAAAACAA |
| Proteus mirabilis HI4320 | PMI0565 | -2 | 4 | TTGTGAAAAAACAA |
| Salmonella typhimurium LT2 | STM0732 | 10 | 3.6 | ATGTGAAAAAACAA |
| Serratia proteamaculans 568 | Spro_1263 | -249 | 4.1 | GTGATCTAAATCAC |
| Yersinia pestis KIM | y3071 | -224 | 3.8 | ATGTTATCAATCAG |
|
Position: -223
Score: 3.5 Sequence: TTGTTTTTCCTTAA
Locus tag: YPK_3241
|
||||
| YPK_3241 | -223 | 3.5 | TTGTTTTTCCTTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyoA | ||||
| Ortholog function: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) | ||||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3875 | -336 | 3.8 | TTGTGAGCTATCAA |
| Proteus mirabilis HI4320 | PMI0108 | 9 | 3.6 | ATGAAATACATAAA |
| Serratia proteamaculans 568 | Spro_1090 | -293 | 3.6 | TTCTTTTACATTAA |
| Yersinia pestis KIM | y1021 | -223 | 3.5 | TTGTTTTTCCTTAA |
|
Position: 15
Score: 3.4 Sequence: CTGACTAACCACAA
Locus tag: YPK_3243
|
||||
| YPK_3243 | 15 | 3.4 | CTGACTAACCACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyoC | ||||
| Ortholog function: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02731 | -267 | 3.7 | TTGTTGATAATTAA |
| Erwinia amylovora ATCC 49946 | EAM_0983 | -207 | 3.7 | GTTATTTAAATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b0430 | -241 | 3.7 | TTGTTTTATTTCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00392 | -49 | 3.7 | TTGAGGTCGTTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3877 | -336 | 3.8 | TTGTGAGCTATCAA |
| Proteus mirabilis HI4320 | PMI0106 | 9 | 3.6 | ATGAAATACATAAA |
| Salmonella typhimurium LT2 | STM0441 | -268 | 3.4 | TTTATTGATAATAA |
| Serratia proteamaculans 568 | Spro_1088 | -293 | 3.6 | TTCTTTTACATTAA |
| Yersinia pestis KIM | y1019 | -223 | 3.5 | TTGTTTTTCCTTAA |
|
Position: 18
Score: 4.2 Sequence: ATGATTAAAATAAA
Locus tag: YPK_3305
|
||||
| YPK_3305 | 18 | 4.2 | ATGATTAAAATAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nqrA | ||||
| Ortholog function: Na-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-) | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00239 | 0 | 4.2 | ATGATTAAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1196 | -205 | 4.1 | TTGAACTAAATCAC |
| Proteus mirabilis HI4320 | PMI0352 | -205 | 4.2 | TTGAGCTAAATCAC |
| Serratia proteamaculans 568 | Spro_0953 | 0 | 4.3 | ATGATTAAAATCAG |
| Yersinia pestis KIM | y0951 | 18 | 4.2 | ATGATTAAAATAAA |
|
Position: -243
Score: 3.4 Sequence: TTAATTTAAAGCAC
Position: -154
Score: 3.3 Sequence: ATTACCTAAATAAA
Locus tag: YPK_3359
|
||||
| YPK_3359 | -243 | 3.4 | TTAATTTAAAGCAC | |
| -154 | 3.3 | ATTACCTAAATAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dcuB | ||||
| Ortholog function: C4-dicarboxylate transporter DcuB | ||||
| Edwardsiella tarda EIB202 | ETAE_2844 | -271 | 3.4 | TTATTTTTTATTAA |
| Enterobacter sp. 638 | Ent638_2479 | -93 | 3.6 | TTGAATTTATACAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1533 | -279 | 3.7 | TTTATTTTCATGAA |
| -243 | 4.5 | TAGATTTAGATCAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b4123 | -283 | 4 | CCGATAAATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04367 | -210 | 3.4 | TCTACTCATATCAA |
| Proteus mirabilis HI4320 | PMI0389 | -78 | 3.4 | TTGTTTTTTTGCAA |
| Salmonella typhimurium LT2 | STM4301 | -72 | 3.5 | TTCACAAAAATCAG |
| Serratia proteamaculans 568 | Spro_3863 | -189 | 3.8 | CAGATTAAAATCAA |
| Yersinia pestis KIM | y0901 | -239 | 3.4 | TTAATTTAAAGCAC |
|
Position: -245
Score: 3.3 Sequence: TTGATAAAAAAGAC
Locus tag: YPK_3376
|
||||
| YPK_3376 | -245 | 3.3 | TTGATAAAAAAGAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ydeJ | ||||
| Ortholog function: Competence/damage-inducible protein CinA | ||||
| Edwardsiella tarda EIB202 | ETAE_2862 | -5 | 3.4 | TCGCTATGGAACAA |
| Enterobacter sp. 638 | Ent638_3132 | -81 | 4.1 | TTCAGTAAAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1537 | -195 | 3.5 | TTGTTATAAGGCAT |
| 7 | 3.5 | TTAATAGAGATAAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03032 | -26 | 3.5 | TTTATCCAGAGCAA |
| Proteus mirabilis HI4320 | PMI0374 | -19 | 3.5 | TCGAGGTGAAACAA |
| Salmonella typhimurium LT2 | STM2830 | -347 | 3.3 | TTGACCGCCGTCAT |
| Salmonella typhimurium LT2 | STM1514 | -238 | 3.6 | GTCATATGCATCAA |
| Yersinia pestis KIM | y0880 | -297 | 3.7 | TTGATCGCAGTTAA |
|
Position: -269
Score: 3.5 Sequence: TTCATTCATCACAA
Position: -221
Score: 4.2 Sequence: TTGATTCCAGACAA
Locus tag: YPK_3394
|
||||
| YPK_3394 | -269 | 3.5 | TTCATTCATCACAA | |
| -221 | 4.2 | TTGATTCCAGACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dmsA | ||||
| Ortholog function: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02177 | -117 | 3.6 | CTGATTTTTCTCAT |
| Enterobacter sp. 638 | Ent638_1418 | -3 | 3.8 | TCTATGAAAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0894 | -184 | 4.3 | TTGATACCGAACAA |
| Salmonella typhimurium LT2 | STM0964 | -96 | 4.2 | |
| Yersinia pestis KIM | y0864 | -199 | 4.2 | TTGATTCCAGACAA |
|
Position: -152
Score: 4.7 Sequence: TTGATAAAGGTCAA
Locus tag: YPK_3411
|
||||
| YPK_3411 | -152 | 4.7 | TTGATAAAGGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhjA | ||||
| Ortholog function: Cytochrome c551 peroxidase (EC 1.11.1.5) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04957 | -73 | 4.7 | TTGATACTTATCAA |
| Edwardsiella tarda EIB202 | ETAE_1715 | -117 | 4.3 | TTGACACTTATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3518 | -121 | 4.7 | TTGATTCCTATCAA |
| Salmonella typhimurium LT2 | STM3820 | -110 | 4.7 | TTGATACCAATCAA |
| Salmonella typhimurium LT2 | STM3820 | -110 | 4.7 | TTGATACCAATCAA |
| Serratia proteamaculans 568 | Spro_1968 | -89 | 4.6 | TTGATTATCGTCAA |
| Yersinia pestis KIM | y0848 | -152 | 4.7 | TTGATAAAGGTCAA |
|
Position: -135
Score: 4.3 Sequence: ATGATTTCGGTCAA
Locus tag: YPK_3492
|
||||
| YPK_3492 | -135 | 4.3 | ATGATTTCGGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pdhR | ||||
| Ortholog function: Pyruvate dehydrogenase complex transcriptional regulator PdhR, GntR family | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03260 | -116 | 4.7 | CTGATTTCAATCAA |
| Edwardsiella tarda EIB202 | ETAE_0658 | -165 | 4.5 | TTGATTGTTAACAA |
| -139 | 5 | ATGATTTACATCAA | ||
| Enterobacter sp. 638 | Ent638_0659 | -116 | 4.7 | CTGATTTCAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3790 | -116 | 4.2 | GTGATTTAGCTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0113 | -115 | 4.8 | ATGATTTCAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00117 | -114 | 4.7 | CTGATTTCAATCAA |
| Proteus mirabilis HI4320 | PMI2047 | -245 | 4 | ATGTGTTTAATCAA |
| -134 | 4.2 | ATGATTTCGCTCAA | ||
| Salmonella typhimurium LT2 | STM0151 | -116 | 4.7 | CTGATTTCAATCAA |
| Serratia proteamaculans 568 | Spro_4012 | -117 | 4.6 | CTGATTTCGATCAA |
| Yersinia pestis KIM | y0766 | -135 | 4.4 | ATGATTTCGGTCAA |
|
Position: -298
Score: 5 Sequence: TTGATATATGTCAA
Locus tag: YPK_3606
|
||||
| YPK_3606 | -298 | 5 | TTGATATATGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: arcA | ||||
| Ortholog function: Aerobic respiration control protein arcA | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03387 | -291 | 5.1 | TTGATATATGTCAA |
| Edwardsiella tarda EIB202 | ETAE_0561 | -300 | 5.1 | TTGATATATGTCAA |
| Enterobacter sp. 638 | Ent638_0562 | -291 | 5.1 | TTGATATATGTCAA |
| Erwinia amylovora ATCC 49946 | EAM_0640 | -399 | 4.5 | TTGATGCAGGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3893 | -339 | 5.1 | TTGATATATGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b4401 | -291 | 5.1 | TTGATATATGTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04856 | -291 | 5.1 | TTGATATATGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0562 | -282 | 4.9 | TTGATGTACGTCAA |
| Proteus mirabilis HI4320 | PMI3719 | -343 | 4 | ATTACATAAATCAA |
| -282 | 4.6 | TTGATATGTGTCAA | ||
| Salmonella typhimurium LT2 | STM4598 | -291 | 5.1 | TTGATATATGTCAA |
| Serratia proteamaculans 568 | Spro_0681 | -299 | 5.1 | TTGATATATGTCAA |
| Yersinia pestis KIM | y3721 | -298 | 5.1 | TTGATATATGTCAA |
|
Position: -192
Score: 4.6 Sequence: TTGTTCTAGGTCAA
Locus tag: YPK_3691
|
||||
| YPK_3691 | -192 | 4.6 | TTGTTCTAGGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrdD | ||||
| Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03580 | -235 | 4.2 | TTGATGCAAATCAC |
| Edwardsiella tarda EIB202 | ETAE_0423 | -196 | 4.7 | TTGATTCAGGTCAA |
| Enterobacter sp. 638 | Ent638_0437 | -244 | 4.7 | TTGTTCTGAATCAA |
| -213 | 4.2 | TTGATGCAAATCAC | ||
| Erwinia amylovora ATCC 49946 | EAM_3059 | -106 | 4.2 | TTGCTTCAGGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0375 | -182 | 4.8 | TTGCTCTACATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b4238 | -249 | 4.8 | TTGAGCTACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04646 | -248 | 4.2 | TTGTTCTGGGTCAA |
| -217 | 4.2 | TTGATGCAAATCAC | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4499 | -160 | 4.7 | TTGTTTCAGATCAA |
| Proteus mirabilis HI4320 | PMI3451 | -184 | 4.9 | TTGATTTAGATCAG |
| Salmonella typhimurium LT2 | STM4452 | -249 | 5 | TTGTTCTACATCAA |
| -218 | 4.2 | TTGATGCAAATCAC | ||
| Serratia proteamaculans 568 | Spro_0525 | -217 | 4.7 | TTGTTCTACGTCAA |
| Yersinia pestis KIM | y0733 | -192 | 4.6 | TTGTTCTAGGTCAA |
|
Position: -277
Score: 3.8 Sequence: TTCAAATAAAACAA
Locus tag: YPK_3813
|
||||
| YPK_3813 | -277 | 3.8 | TTCAAATAAAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: frdA | ||||
| Ortholog function: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03678 | -151 | 4 | TTAATCAGAATCAA |
| Enterobacter sp. 638 | Ent638_0343 | -31 | 3.6 | TTGCGGAATAACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4124 | -239 | 4.1 | |
| Proteus mirabilis HI4320 | PMI3588 | -208 | 4 | |
| Salmonella typhimurium LT2 | STM4343 | -191 | 4.4 | TTAATCAAAATCAA |
| Serratia proteamaculans 568 | Spro_0419 | -63 | 3.7 | TTTATAAATATTAA |
|
Position: -253
Score: 3.3 Sequence: CTGATATTTATAAT
Locus tag: YPK_3864
|
||||
| YPK_3864 | -253 | 3.3 | CTGATATTTATAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ubiC | ||||
| Ortholog function: Chorismate--pyruvate lyase (EC 4.1.3.40) | ||||
| Erwinia amylovora ATCC 49946 | EAM_0260 | -194 | 3.8 | CTGATATTAGTCAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0626 | -230 | 3.3 | GTGACTAGGGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b4039 | -70 | 3.4 | TTGCTTTACATCTC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4378 | -253 | 3.8 | TTATTTTTGGTCAA |
| Proteus mirabilis HI4320 | PMI2753 | -163 | 4.3 | TTGTTTTTTCTCAA |
| Serratia proteamaculans 568 | Spro_4464 | -223 | 3.6 | TTGCTGGAGATCAC |
| Yersinia pestis KIM | y0568 | -253 | 3.3 | CTGATATTTATAAT |
|
Position: -347
Score: 3.8 Sequence: GTGATTTATGTCAC
Position: -295
Score: 4.2 Sequence: GTGATTTAAATCAC
Locus tag: YPK_3951
|
||||
| YPK_3951 | -347 | 3.8 | GTGATTTATGTCAC | |
| -295 | 4.2 | GTGATTTAAATCAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ysgA | ||||
| Ortholog function: Predcited carboxymethylenebutenolidase (EC 3.1.1.45) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00172 | -133 | 4.1 | GTGATTTACATCAC |
| Erwinia amylovora ATCC 49946 | EAM_0199 | -199 | 3.6 | TTAATCAAAATGAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0184 | -155 | 3.8 | GTGACTTAAATCAC |
| Salmonella typhimurium LT2 | STM3967 | -169 | 4.2 | ATGACGTAAAACAA |
| Serratia proteamaculans 568 | Spro_0243 | -174 | 3.8 | TTAATGCAGGTCAA |
| Yersinia pestis KIM | y0443 | -296 | 4.2 | GTGATTTAAATCAC |
|
Position: -151
Score: 3.8 Sequence: GTGATTTTGATCAC
Position: -145
Score: 4.3 Sequence: TTGATCACAATCAT
Position: -91
Score: 4.4 Sequence: TTGTTTCTTATCAA
Position: -87
Score: 4.1 Sequence: TTCTTATCAATCAA
Locus tag: YPK_3991
|
||||
| YPK_3991 | -151 | 3.8 | GTGATTTTGATCAC | |
| -145 | 4.3 | TTGATCACAATCAT | ||
| -91 | 4.4 | TTGTTTCTTATCAA | ||
| -87 | 4.1 | TTCTTATCAATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpA | ||||
| Ortholog function: Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00536 | -30 | 3.8 | ATGATAAAAAACGA |
| Edwardsiella tarda EIB202 | ETAE_3115 | -78 | 4.1 | TTGCTCCTTATCAA |
| Enterobacter sp. 638 | Ent638_2805 | -69 | 4.3 | ATGTTCGAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4165 | -84 | 4.5 | TTGCTCTTTATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b2241 | -71 | 3.6 | ATGCGCGAAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02647 | -71 | 4.1 | ATGCTCGAAATCAA |
| Proteus mirabilis HI4320 | PMI3592 | -107 | 4.2 | TTGCTCATTATCAA |
| Salmonella typhimurium LT2 | STM2284 | -30 | 3.8 | ATGATAAAAAACGA |
| Serratia proteamaculans 568 | Spro_0200 | -74 | 4.3 | TTGTTCCTTATCAA |
| Yersinia pestis KIM | y0404 | -145 | 4.3 | TTGATCACAATCAT |
| -91 | 4.4 | TTGTTTCTTATCAA | ||
|
Position: -148
Score: 4.2 Sequence: CTGACTTGAATCAA
Locus tag: YPK_4126
|
||||
| YPK_4126 | -148 | 4.2 | CTGACTTGAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pfkA | ||||
| Ortholog function: 6-phosphofructokinase (EC 2.7.1.11) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03085 | -132 | 4 | CTGACCTGAATCAA |
| Edwardsiella tarda EIB202 | ETAE_3450 | -223 | 4 | CTGACCTGAATCAA |
| Enterobacter sp. 638 | Ent638_4056 | -174 | 4 | CTGACCTGAATCAA |
| Erwinia amylovora ATCC 49946 | EAM_0103 | -31 | 4 | ATTATTTGCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4307 | -140 | 4 | CTGACCTGAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3916 | -125 | 4 | CTGACCTGAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04223 | -123 | 4 | CTGACCTGAATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4774 | -203 | 4.1 | TTGATCTCAAAAAA |
| Proteus mirabilis HI4320 | PMI3203 | -194 | 3.7 | TTAATGCGCATCAA |
| Salmonella typhimurium LT2 | STM4062 | -126 | 4 | CTGACCTGAATCAA |
| Serratia proteamaculans 568 | Spro_4807 | -145 | 4.1 | GTGACTTGAATCAA |
| Yersinia pestis KIM | y0059 | -148 | 4.2 | CTGACTTGAATCAA |
|
Position: -28
Score: 3.7 Sequence: TTTAACTACAACAA
Locus tag: YPK_4220
|
||||
| YPK_4220 | -28 | 3.7 | TTTAACTACAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpB | ||||
| Ortholog function: ATP synthase A chain (EC 3.6.3.14) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00078 | -122 | 4.2 | TTGTTTGAAATCAC |
| Enterobacter sp. 638 | Ent638_4126 | -292 | 3.7 | TTGATTAATATGAC |
| Erwinia amylovora ATCC 49946 | EAM_3480 | -124 | 3.9 | TCGATTGAAATCAC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4518 | -191 | 3.7 | ATGATTGTTAGCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3738 | -123 | 4.2 | TTGTTTGAAATCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04143 | -122 | 4.2 | TTGTTTGAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0046 | -225 | 3.9 | ATTATTAAAAACAA |
| Proteus mirabilis HI4320 | PMI3058 | -130 | 4 | |
| Salmonella typhimurium LT2 | STM3871 | -122 | 4.2 | TTGTTTGAAATCAC |
|
Position: 4
Score: 3.6 Sequence: ATAATCTAAATAAA
Locus tag: YPK_4235
|
||||
| YPK_4235 | 4 | 3.6 | ATAATCTAAATAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: phoU | ||||
| Ortholog function: Phosphate transport system regulatory protein PhoU | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00061 | -243 | 4.4 | CTGTTTTTAATCAA |
| Edwardsiella tarda EIB202 | ETAE_3542 | -93 | 3.8 | TTTACTGTCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4473 | -52 | 3.6 | CTGATTGATAACGA |
| Escherichia coli str. K-12 substr. MG1655 | b3724 | -138 | 3.8 | CTTATTTAAATCAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0218 | -33 | 3.9 | TTGTTGATTCTCAA |
| Proteus mirabilis HI4320 | PMI2897 | -46 | 4 | TTGATAGATGTCGA |