Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fnr regulog to Yersinia pseudotuberculosis YPIII

Reference regulog properties
Source regulog: Fnr - Enterobacteriales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Energy metabolism; Anaerobic metabolism
Effector: Oxygen
Phylum: Gammaproteobacteria
Propagated regulon:
Target genome Yersinia pseudotuberculosis YPIII
Orthologous TF(s) YPK_1944
Regulated genes 72
Built upon 685 sites [see more]
Predicted regulatory interactions in Yersinia pseudotuberculosis YPIII
Locus tag Position Score Sequence
Position: -25
Score: 4.2
Sequence: ATGCTATTAATCAA
Locus tag: YPK_0147
YPK_0147 -25 4.2 ATGCTATTAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glgB
Ortholog function: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)
Edwardsiella tarda EIB202 ETAE_3307 -153 4.8 TTCATTTATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4151 -38 4.2 TTTATTTAATTCAA
Yersinia pestis KIM y3886 -25 4.2 ATGCTATTAATCAA
Position: -32
Score: 3.7
Sequence: TTGATTTTAATTTA
Position: -22
Score: 3.8
Sequence: TTTATTGATATCAC
Locus tag: YPK_0168
YPK_0168 -32 3.7 TTGATTTTAATTTA
-22 3.8 TTTATTGATATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoB
Ortholog function: Ferrous iron transport protein B
Citrobacter koseri ATCC BAA-895 CKO_04831 -204 4.1 TTGAGCCATGTCAA
Enterobacter sp. 638 Ent638_3822 -133 4.2 TTGAGCAAGGTCAA
Escherichia coli str. K-12 substr. MG1655 b3409 -203 4.4 TTGAGCCACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03779 -198 3.8 TTGCGGCATATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0208 -206 3.5 TGGATGCAAATCAT
Proteus mirabilis HI4320 PMI2921 -190 5.2 TTGATGTACATCAA
Salmonella typhimurium LT2 STM3506 -204 4.4 TTGAGCCATATCAA
Serratia proteamaculans 568 Spro_4629 -284 3.8 CTGATTTAACTCAC
Yersinia pestis KIM y3911 -93 4 ATTATTTAAATCAT
Position: -93
Score: 4
Sequence: ATTATTTAAATCAT
Locus tag: YPK_0169
YPK_0169 -93 4 ATTATTTAAATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Citrobacter koseri ATCC BAA-895 CKO_04830 -204 4.1 TTGAGCCATGTCAA
Enterobacter sp. 638 Ent638_3821 -133 4.2 TTGAGCAAGGTCAA
Escherichia coli str. K-12 substr. MG1655 b3408 -203 4.4 TTGAGCCACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03778 -198 3.8 TTGCGGCATATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0209 -206 3.5 TGGATGCAAATCAT
Proteus mirabilis HI4320 PMI2920 -190 5.2 TTGATGTACATCAA
Salmonella typhimurium LT2 STM3505 -204 4.4 TTGAGCCATATCAA
Serratia proteamaculans 568 Spro_4628 -284 3.8 CTGATTTAACTCAC
Yersinia pestis KIM y3912 -93 4 ATTATTTAAATCAT
Position: -3
Score: 3.8
Sequence: ATGATGACAATCAG
Locus tag: YPK_0423
YPK_0423 -3 3.8 ATGATGACAATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ssuC
Ortholog function: Alkanesulfonates transport system permease protein
Citrobacter koseri ATCC BAA-895 CKO_02127 -43 3.7 TTAATGAAAATCGA
Enterobacter sp. 638 Ent638_1453 -181 3.5 TTGACCTGAGGCAA
Erwinia amylovora ATCC 49946 EAM_1362 9 3.7 TTGTCTAAAGTCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4412 -102 3.6 TTGAGATTTAAAAA
Escherichia coli str. K-12 substr. MG1655 b0934 -278 3.6 GCCATTTAAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00970 -182 3.8 TTGACCTGCGACAA
Serratia proteamaculans 568 Spro_1736 -256 4.6 TTGATTAAAAGCAA
Yersinia pestis KIM y0243 0 3.8 ATGATGACAATCAG
Position: -5
Score: 4.2
Sequence: TTGATATGAGTCAG
Locus tag: YPK_0529
YPK_0529 -5 4.2 TTGATATGAGTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltD
Ortholog function: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Escherichia coli str. K-12 substr. MG1655 b3213 -156 3.9 TTGACCTGTATCAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03625 -114 3.9 ATGTTGTACGACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4010 -362 4.1 GTGATATAAATCAC
-334 4.1 CTGATCTATATCAC
Proteus mirabilis HI4320 PMI3676 -353 3.7 TTATCTAACATCAA
-252 4.1 TTTTTATTTATCAA
Serratia proteamaculans 568 Spro_4345 -330 3.6 ATATTAAATATCAA
Yersinia pestis KIM y0129 -72 3.8 CTGTCTGATATCAA
Position: -72
Score: 3.8
Sequence: CTGTCTGATATCAA
Locus tag: YPK_0530
YPK_0530 -72 3.8 CTGTCTGATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltB
Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Escherichia coli str. K-12 substr. MG1655 b3212 -156 3.9 TTGACCTGTATCAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03624 -114 3.9 ATGTTGTACGACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4009 -362 4.1 GTGATATAAATCAC
-334 4.1 CTGATCTATATCAC
Proteus mirabilis HI4320 PMI3677 -353 3.7 TTATCTAACATCAA
-252 4.1 TTTTTATTTATCAA
Serratia proteamaculans 568 Spro_4344 -330 3.6 ATATTAAATATCAA
Yersinia pestis KIM y0128 -72 3.8 CTGTCTGATATCAA
Position: -133
Score: 4.1
Sequence: TTGATCTCTGTCAT
Locus tag: YPK_0531
YPK_0531 -133 4.1 TTGATCTCTGTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhcC
Ortholog function: COG1242: Predicted Fe-S oxidoreductase
Enterobacter sp. 638 Ent638_3655 -65 3.7 TTTATTCAAATGAA
-32 4 TTGATCCAGGTCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0313 -70 3.7 TTGATCGCGGTCAT
Escherichia coli str. K-12 substr. MG1655 b3211 -75 4 TTGATCCAGGTCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03623 -75 4 TTGATCCAGGTCAT
Salmonella typhimurium LT2 STM3329 -75 4 TTGATCCAGGTCAT
Serratia proteamaculans 568 Spro_4343 -74 4.2 TTGATCTCTGTCAT
Yersinia pestis KIM y0127 -133 4.2 TTGATCTCTGTCAT
Position: -225
Score: 3.8
Sequence: TTGAGTGACATCAC
Locus tag: YPK_0554
YPK_0554 -225 3.8 TTGAGTGACATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxaC
Ortholog function: Uronate isomerase (EC 5.3.1.12)
Serratia proteamaculans 568 Spro_4321 -227 3.9 TTGAGTGATATCAC
Yersinia pestis KIM y3600 -225 3.8 TTGAGTGACATCAC
Position: -238
Score: 5.1
Sequence: TTGATTCAAATCAA
Position: -185
Score: 4.7
Sequence: ATGTTTTATATCAA
Locus tag: YPK_1173
YPK_1173 -238 5.1 TTGATTCAAATCAA
-185 4.7 ATGTTTTATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ung
Ortholog function: Uracil-DNA glycosylase (EC 3.2.2.27)
Citrobacter koseri ATCC BAA-895 CKO_00204 -209 5.6 TTGATTTAAATCAA
-156 5.1 TTGTTTTACATCAA
Edwardsiella tarda EIB202 ETAE_2734 -396 4.1 TTGAGATAGAGCAA
-280 5.4 TTGATCTAAATCAA
-227 4.7 ATGTTTTACATCAA
Enterobacter sp. 638 Ent638_3065 -194 5 TTGACCTAAATCAA
-142 5.1 TTGTTTTATATCAA
34 4.2 CTGATGAAAAACAA
Erwinia amylovora ATCC 49946 EAM_2526 -177 4.9 TTGATGCAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3289 -228 5.1 TTGACTTAAATCAA
-175 5.1 TTGTTTTATATCAA
Escherichia coli str. K-12 substr. MG1655 b2580 -197 5.6 TTGATTTAAATCAA
-144 5.1 TTGTTTTACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02903 -206 5.5 TTGATATAAATCAA
-153 5.1 TTGTTTTACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3371 -233 4.1 TTGATTCAGAACAG
Proteus mirabilis HI4320 PMI1899 -221 5.1 TTGATAAATATCAA
-168 5.2 TTGTTTTAAATCAA
Salmonella typhimurium LT2 STM2647 -208 5.6 TTGATTTAAATCAA
-155 5.1 TTGTTTTACATCAA
Serratia proteamaculans 568 Spro_3683 -222 5 TTGATTAAAGTCAA
-169 4.4 ATGTTTTATGTCAA
Yersinia pestis KIM y1281 -213 5.2 TTGATTCAAATCAA
-160 4.7 ATGTTTTATATCAA
Position: -180
Score: 4.6
Sequence: TTGATATAAAACAT
Position: -127
Score: 5.1
Sequence: TTGATTTGAATCAA
Locus tag: YPK_1174
YPK_1174 -180 4.6 TTGATATAAAACAT
-127 5.1 TTGATTTGAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfiD
Ortholog function: Stress-induced alternate pyruvate formate-lyase subunit
Edwardsiella tarda EIB202 ETAE_2732 -27 4.3 TTGCTCTATCTCAA
Proteus mirabilis HI4320 PMI1898 -180 5.2 TTGATTTAAAACAA
-127 5.1 TTGATATTTATCAA
Serratia proteamaculans 568 Spro_3682 -189 4.2 TTGACATAAAACAT
-136 4.9 TTGACTTTAATCAA
Yersinia pestis KIM y1282 -180 4.6 TTGATATAAAACAT
-127 5.1 TTGATTTGAATCAA
Position: -350
Score: 4.5
Sequence: CTGATTCAGATCAA
Locus tag: YPK_1351
YPK_1351 -350 4.5 CTGATTCAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: purM
Ortholog function: Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)
Edwardsiella tarda EIB202 ETAE_1086 -186 4.7 ATGATCTCAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1254 -198 4.3 CTGATCCAGATCAA
Escherichia coli str. K-12 substr. MG1655 b2499 -243 4.6 TTGACTTTAGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2760 -137 5.2 TTGATTTTCATCAA
Proteus mirabilis HI4320 PMI1575 -148 5 TTGATATTGATCAA
Salmonella typhimurium LT2 STM2499.S -309 4.4 TTGACCTGGATCAA
Yersinia pestis KIM y1407 -312 4.5 CTGATTCAGATCAA
-274 3.7 ATGCTAAAAATCAG
Position: -98
Score: 4.4
Sequence: TTGATCTGAATCAG
Locus tag: YPK_1352
YPK_1352 -98 4.4 TTGATCTGAATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: upp
Ortholog function: Uracil phosphoribosyltransferase (EC 2.4.2.9)
Citrobacter koseri ATCC BAA-895 CKO_00293 -103 4.6 TTGATCCATGTCAA
Edwardsiella tarda EIB202 ETAE_1087 -97 4.5 TTGATTGAGATCAT
Enterobacter sp. 638 Ent638_2986 -97 4.4 TTGATCACCGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1255 -169 4.3 TTGATCTGGATCAG
Escherichia coli str. K-12 substr. MG1655 b2498 -95 4.6 TTGACTAAAGTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02821 -96 5 TTGATATACGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2759 -103 5.1 TTGATGAAAATCAA
Proteus mirabilis HI4320 PMI1574 -97 5.1 TTGATCAATATCAA
Salmonella typhimurium LT2 STM2498 -103 4.6 TTGATCCAGGTCAA
Yersinia pestis KIM y1408 -98 4.4 TTGATCTGAATCAG
Position: -281
Score: 3.3
Sequence: GTTATATATATTAA
Position: -211
Score: 3.7
Sequence: TTGATCTTGCGCAA
Position: -198
Score: 3.7
Sequence: ATGTCTACCATCAA
Position: -119
Score: 3.4
Sequence: TTTATTTTAATAAT
Position: -114
Score: 3.2
Sequence: TTTAATAATATAAA
Locus tag: YPK_1385
YPK_1385 -281 3.3 GTTATATATATTAA
-211 3.7 TTGATCTTGCGCAA
-198 3.7 ATGTCTACCATCAA
-119 3.4 TTTATTTTAATAAT
-114 3.2 TTTAATAATATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napF
Ortholog function: Ferredoxin-type protein NapF (periplasmic nitrate reductase)
Escherichia coli str. K-12 substr. MG1655 b2208 -46 3.2 TTGGTCGCTCTCAA
Salmonella typhimurium LT2 STM2261 -90 3.3 CTTATTTACAAAAA
Position: -302
Score: 4
Sequence: TGGATTTTTAACAA
Locus tag: YPK_1496
YPK_1496 -302 4 TGGATTTTTAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmA
Ortholog function: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Citrobacter koseri ATCC BAA-895 CKO_00574 -35 3.4 TTGCCCGACATCAG
Edwardsiella tarda EIB202 ETAE_2461 -396 4.3 TTGCTATATATCAG
5 3.5 GCGATTAAAATCAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1882 -106 4.4 TTGATCTCAATAAA
Escherichia coli str. K-12 substr. MG1655 b2201 -46 3.2 TTGGTCGCTCTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02081 -326 3.4 GTGATACAAGTCAC
Salmonella typhimurium LT2 STM2254 -90 3.3 CTTATTTACAAAAA
Salmonella typhimurium LT2 STM3819 -110 4.7 TTGATACCAATCAA
Yersinia pestis KIM y1567 -302 4 TGGATTTTTAACAA
Position: 12
Score: 3.6
Sequence: CTGATAGTCATCAT
Locus tag: YPK_1504
YPK_1504 12 3.6 CTGATAGTCATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmH
Ortholog function: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH
Citrobacter koseri ATCC BAA-895 CKO_00583 -19 3.3 TTTATAAGGATAAA
Edwardsiella tarda EIB202 ETAE_2454 -114 3.5 TTATTGTATATAAA
Edwardsiella tarda EIB202 ETAE_2453 -114 3.5 TTATTGTATATAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1889 -106 4.4 TTGATCTCAATAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1890 -106 4.4 TTGATCTCAATAAA
Escherichia coli str. K-12 substr. MG1655 b2194 -46 3.2 TTGGTCGCTCTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02074 -326 3.4 GTGATACAAGTCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02073 -326 3.4 GTGATACAAGTCAC
Salmonella typhimurium LT2 STM2247 -90 3.3 CTTATTTACAAAAA
Salmonella typhimurium LT2 STM3812 -110 4.7 TTGATACCAATCAA
Yersinia pestis KIM y1575 12 3.6 CTGATAGTCATCAT
Yersinia pestis KIM y1574 -302 4 TGGATTTTTAACAA
Position: -232
Score: 3.6
Sequence: TCGACTTTTATCAT
Position: -163
Score: 4.1
Sequence: ATGATGTTAATCAT
Position: -154
Score: 3.8
Sequence: ATCATTAATGTCAA
Locus tag: YPK_1551
YPK_1551 -232 3.6 TCGACTTTTATCAT
-163 4.1 ATGATGTTAATCAT
-154 3.8 ATCATTAATGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: Acetate kinase (EC 2.7.2.1)
Citrobacter koseri ATCC BAA-895 CKO_00498 -92 4.1 ATGATGTTAATCAT
Edwardsiella tarda EIB202 ETAE_2397 -93 4.1 ATGATGTTAATCAT
Enterobacter sp. 638 Ent638_2840 -92 4.1 ATGATGTTAATCAT
Erwinia amylovora ATCC 49946 EAM_2301 -119 3.9 TTGCTTTCGGACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3039 -91 4.1 ATGATGTTAATCAT
Escherichia coli str. K-12 substr. MG1655 b2296 -92 4.1 ATGATGTTAATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02687 -91 4.1 ATGATGTTAATCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu3095 -117 4.1 ATGATGTTAATCAT
Proteus mirabilis HI4320 PMI1771 -165 3.7 TTGATGATTGGCAA
Salmonella typhimurium LT2 STM2337 -92 4.1 ATGATGTTAATCAT
Serratia proteamaculans 568 Spro_3316 -121 4.1 ATGATGTTAATCAT
Yersinia pestis KIM y1622 -163 4.1 ATGATGTTAATCAT
Position: 8
Score: 3.7
Sequence: ATTATATTTAACAA
Locus tag: YPK_1570
YPK_1570 8 3.7 ATTATATTTAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nuoL
Ortholog function: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00518 -198 4 TCGATGTAAATTAA
Edwardsiella tarda EIB202 ETAE_2375 -292 3.7 TTGATGTAAACGAA
Escherichia coli str. K-12 substr. MG1655 b2278 -433 3.7 ATGATGTTAAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02668 -392 3.6 TTGATTTACGACGG
Photorhabdus luminescens subsp. laumondii TTO1 plu3079 -207 3.8 TTGTTATTTGTAAA
Salmonella typhimurium LT2 STM2318 -199 4.6 TTGATGTAAATTAA
Serratia proteamaculans 568 Spro_3298 -280 3.8 TTTCTACACATCAA
Yersinia pestis KIM y1640 -465 3.6 TTTTATTAAAACAA
Position: -148
Score: 5.3
Sequence: TTGATATATATCAA
Locus tag: YPK_1702
YPK_1702 -148 5.3 TTGATATATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase (EC 1.6.99.3)
Citrobacter koseri ATCC BAA-895 CKO_01946 -163 5.2 TTGATGTACATCAA
Edwardsiella tarda EIB202 ETAE_2070 -162 5.1 TTGATTTGAATCAA
Enterobacter sp. 638 Ent638_1624 -149 5.1 TTGATTCATATCAA
Erwinia amylovora ATCC 49946 EAM_1473 -146 4.2 TTGACCAGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1815 -149 5.4 TTGATATATATCAA
Escherichia coli str. K-12 substr. MG1655 b1109 -150 5.2 TTGATTAACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01106 -148 4.8 TTGATGCACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2821 -150 4.2 TTGATGTTGTTCAA
Proteus mirabilis HI4320 PMI0875 -153 5.5 TTGATATAAATCAA
Salmonella typhimurium LT2 STM1211 -150 4.8 TTGATGCACATCAA
Serratia proteamaculans 568 Spro_1926 -149 5.2 TTGATGTACATCAA
Yersinia pestis KIM y1777 -148 5.4 TTGATATATATCAA
Position: -53
Score: 4
Sequence: TTGATCATGATCAC
Locus tag: YPK_1712
YPK_1712 -53 4 TTGATCATGATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepT
Ortholog function: Tripeptide aminopeptidase (EC 3.4.11.4)
Citrobacter koseri ATCC BAA-895 CKO_01926 -42 3.3 TTGCTTATTAATAA
Escherichia coli str. K-12 substr. MG1655 b1127 -121 3.7 TTTATATTCATTAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01133 -347 3.5 TTGTTGATGGTCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu2810 -156 3.8 TTGATGAAAAGCAT
Proteus mirabilis HI4320 PMI0882 -92 3.7 TTGATTTAATTAAT
Salmonella typhimurium LT2 STM1227 -375 4.1 TTGTTAATGGTCAA
Serratia proteamaculans 568 Spro_2009 -96 3.6 ATGATTTCCGTTAA
Yersinia pestis KIM y1791 -23 4 TTGATCATGATCAC
Position: -3
Score: 4.2
Sequence: TTGATGGAAAGCAA
Locus tag: YPK_1723
YPK_1723 -3 4.2 TTGATGGAAAGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: icdA
Ortholog function: Isocitrate dehydrogenase (EC 1.1.1.42)
Edwardsiella tarda EIB202 ETAE_2050 -73 3.9 TTTTATTAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2439 -158 3.7 GTGATTTTTAACAG
Escherichia coli str. K-12 substr. MG1655 b1136 -89 3.6 TTGCTCTAAAGCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu2801 -249 4.8 TTGTTAAATATCAA
Serratia proteamaculans 568 Spro_2025 -3 4.3 TTGATGGAAAGCAA
Yersinia pestis KIM y1802 -106 3.7 GTGATTTTTAACAG
Position: -32
Score: 4.4
Sequence: TTGACGCATATCAA
Locus tag: YPK_1944
YPK_1944 -32 4.4 TTGACGCATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fnr
Ortholog function: Fumarate and nitrate reduction regulatory protein
Citrobacter koseri ATCC BAA-895 CKO_01409 -83 3.8 TTGATGTAAAGTAA
Edwardsiella tarda EIB202 ETAE_1744 -133 3.4 GTGCTATACATCAC
-33 4.6 TTGACCGATATCAA
Enterobacter sp. 638 Ent638_1853 -33 4.6 TTGACCAATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2207 -34 4.6 TTGACCAATATCAA
Escherichia coli str. K-12 substr. MG1655 b1334 -33 4.7 TTGACAAATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01530 -327 4.6 TTGACCAATATCAA
-185 3.5 ATGAGCTTGATCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu2179 -35 3.4 TTGAAGGATATGAA
Proteus mirabilis HI4320 PMI1203 -40 4.5 TTGACACATATCAA
Salmonella typhimurium LT2 STM1660.S -33 4.7 TTGACAAATATCAA
Serratia proteamaculans 568 Spro_2582 -34 4.4 TTGACGCATATCAA
Yersinia pestis KIM y2132 -32 4.4 TTGACGCATATCAA
Position: -159
Score: 4.4
Sequence: ATGATCCAGATCAA
Locus tag: YPK_2049
YPK_2049 -159 4.4 ATGATCCAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W; colicin S4 receptor; putative transporter
Citrobacter koseri ATCC BAA-895 CKO_01333 -117 4.1 TTAATCTGGATCAA
Edwardsiella tarda EIB202 ETAE_1528 -157 4.9 TTGATGTCTATCAA
Enterobacter sp. 638 Ent638_2283 -117 4.1 TTAATCTGGATCAA
Erwinia amylovora ATCC 49946 EAM_1884 -160 5.4 TTGATCTAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2303 -160 4.8 TTGATCTGGATCAA
Escherichia coli str. K-12 substr. MG1655 b1256 -162 4.8 TTGATTTAAATCAC
-117 4.1 TTAATCCAGATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01248 -247 4.2 TTGATTTCACTCAT
-80 4.1 TTAATCTGGATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2478 -160 5 TTGATTTGGATCAA
Proteus mirabilis HI4320 PMI1350 -164 4.8 TTGATGTGGATCAA
Salmonella typhimurium LT2 STM1732 -117 4.1 TTAATCTGGATCAA
Serratia proteamaculans 568 Spro_2674 -131 5 TTGATTCAGATCAA
Yersinia pestis KIM y2044 -171 3.6 ATGATAAATGGCAA
-147 4.4 ATGATCCAGATCAA
Position: -282
Score: 4.2
Sequence: GTGATTTAAATCAC
Locus tag: YPK_2072
YPK_2072 -282 4.2 GTGATTTAAATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Citrobacter koseri ATCC BAA-895 CKO_01318 -238 4.1 TTGATCTGGATCAC
Enterobacter sp. 638 Ent638_2304 -249 4.5 TTGATTCAGATCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2326 -311 3.6 TCGATGTTGATCAC
-305 3.8 TTGATCACAAAAAA
Escherichia coli str. K-12 substr. MG1655 b1241 -237 4.3 TTGATTTGGATCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02199 -233 4.7 TTGATCTAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu2496 -134 4.5 GTGATTAAGATCAA
Proteus mirabilis HI4320 PMI1486 -242 3.8 GTGATGTAGATCAC
Salmonella typhimurium LT2 STM1749 -238 4.7 TTGATTTAGATCAC
Serratia proteamaculans 568 Spro_2704 -274 4.4 ATGATTTAAATCAC
Position: -301
Score: 3.6
Sequence: TTGCTGTGTATAAA
Position: -202
Score: 3.8
Sequence: TTGATATATATATA
Locus tag: YPK_2578
YPK_2578 -301 3.6 TTGCTGTGTATAAA
-202 3.8 TTGATATATATATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moeA
Ortholog function: Molybdopterin biosynthesis protein MoeA
Edwardsiella tarda EIB202 ETAE_1153 -335 3.8 ATGATACAGATCAC
Enterobacter sp. 638 Ent638_1321 -155 3.3 TCTATAAATATCAT
Erwinia amylovora ATCC 49946 EAM_1284 -244 3.5 CTGTGATAAATCAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2836 -383 3.7 ATGATGTAAAGCAG
Escherichia coli str. K-12 substr. MG1655 b0827 18 3.7 TTGATGTCGCTCGA
Photorhabdus luminescens subsp. laumondii TTO1 plu1540 -244 3.9 TTGACAGTGGTCAA
Proteus mirabilis HI4320 PMI0637 -182 3.7 TTAAAATACAACAA
Yersinia pestis KIM y2673 -202 3.8 TTGATATATATATA
Position: 0
Score: 3.6
Sequence: ATGAAATATATAAA
Locus tag: YPK_2674
YPK_2674 0 3.6 ATGAAATATATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ansB
Ortholog function: L-asparaginase (EC 3.5.1.1)
Edwardsiella tarda EIB202 ETAE_2179 0 3.7 ATGAAGTTAGTCAA
Escherichia coli str. K-12 substr. MG1655 b2957 -71 4.5 TTGTTTAACGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1616 -55 3.7 TTTATTGTTATCAT
Proteus mirabilis HI4320 PMI0708 -139 4.2 TTGATTTTAAATAA
Yersinia pestis KIM y2787 0 3.6 ATGAAATATATAAA
Position: -80
Score: 4.5
Sequence: ATGATCCATATCAA
Locus tag: YPK_2676
YPK_2676 -80 4.5 ATGATCCATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: focA
Ortholog function: Formate efflux transporter (TC 2.A.44 family)
Citrobacter koseri ATCC BAA-895 CKO_02167 -116 4.9 ATGATCTATATCAA
Edwardsiella tarda EIB202 ETAE_2181 -117 4.2 ATGATCCATGTCAA
Enterobacter sp. 638 Ent638_1424 -74 4.9 ATGATCTATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2596 -228 4 ATGATTTTTATTAA
-75 4.5 ATGATCCACATCAA
Escherichia coli str. K-12 substr. MG1655 b0904 -74 4.9 ATGATCTATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00932 -117 4.9 ATGATCTATATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1614 -267 4.1 TTTATTTGCAACAA
-159 4.7 TTTATTAAAATCAA
-84 4.9 ATGATCTATATCAA
Proteus mirabilis HI4320 PMI0706 -159 4.1 TTATTATTAATCAA
-85 4.5 ATGATCCATATCAA
Salmonella typhimurium LT2 STM0974 -74 4.9 ATGATCTATATCAA
Serratia proteamaculans 568 Spro_1703 -143 3.9 ATAATTTAACTCAA
-81 4.6 ATGATCCAAATCAA
Yersinia pestis KIM y2789 -80 4.5 ATGATCCATATCAA
Position: -114
Score: 4.1
Sequence: TTGCGTCAAATCAA
Locus tag: YPK_2701
YPK_2701 -114 4.1 TTGCGTCAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Edwardsiella tarda EIB202 ETAE_2215 -113 4.4 TTGCGTTATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2662 -114 4.4 TTGCGCTAAATCAA
Proteus mirabilis HI4320 PMI2112 -131 4.4 TTGCGTTAGATCAA
Serratia proteamaculans 568 Spro_1666 -66 4.4 TTGCGCTAAATCAA
Yersinia pestis KIM y2819 -115 4.1 TTGCGTCAAATCAA
Position: -314
Score: 5.1
Sequence: TTGTTCTAAATCAA
Position: -263
Score: 4.4
Sequence: TTGTCGTAGATCAA
Locus tag: YPK_2964
YPK_2964 -314 5.1 TTGTTCTAAATCAA
-263 4.4 TTGTCGTAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydA
Ortholog function: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
Proteus mirabilis HI4320 PMI0573 -312 4.5 TTGATGTGGGTCAA
Yersinia pestis KIM y3063 -314 5.1 TTGTTCTAAATCAA
-263 4.4 TTGTCGTAGATCAA
Position: -299
Score: 3.7
Sequence: TTATTCTTTGTCAA
Position: -224
Score: 3.8
Sequence: ATGTTATCAATCAG
Locus tag: YPK_2972
YPK_2972 -299 3.7 TTATTCTTTGTCAA
-224 3.8 ATGTTATCAATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Citrobacter koseri ATCC BAA-895 CKO_02438 25 3.6 ATGTGAAAAAACAA
Edwardsiella tarda EIB202 ETAE_2588 10 4
Escherichia coli str. K-12 substr. MG1655 b0721 10 3.6 ATGTGAAAAAACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00728 -104 3.6 ATGTGAAAAAACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1426 -127 4 TTGTGAAAAAACAA
Proteus mirabilis HI4320 PMI0565 -2 4 TTGTGAAAAAACAA
Salmonella typhimurium LT2 STM0732 10 3.6 ATGTGAAAAAACAA
Serratia proteamaculans 568 Spro_1263 -249 4.1 GTGATCTAAATCAC
Yersinia pestis KIM y3071 -224 3.8 ATGTTATCAATCAG
Position: -223
Score: 3.5
Sequence: TTGTTTTTCCTTAA
Locus tag: YPK_3241
YPK_3241 -223 3.5 TTGTTTTTCCTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoA
Ortholog function: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
Photorhabdus luminescens subsp. laumondii TTO1 plu3875 -336 3.8 TTGTGAGCTATCAA
Proteus mirabilis HI4320 PMI0108 9 3.6 ATGAAATACATAAA
Serratia proteamaculans 568 Spro_1090 -293 3.6 TTCTTTTACATTAA
Yersinia pestis KIM y1021 -223 3.5 TTGTTTTTCCTTAA
Position: 15
Score: 3.4
Sequence: CTGACTAACCACAA
Locus tag: YPK_3243
YPK_3243 15 3.4 CTGACTAACCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoC
Ortholog function: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)
Citrobacter koseri ATCC BAA-895 CKO_02731 -267 3.7 TTGTTGATAATTAA
Erwinia amylovora ATCC 49946 EAM_0983 -207 3.7 GTTATTTAAATCAG
Escherichia coli str. K-12 substr. MG1655 b0430 -241 3.7 TTGTTTTATTTCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00392 -49 3.7 TTGAGGTCGTTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3877 -336 3.8 TTGTGAGCTATCAA
Proteus mirabilis HI4320 PMI0106 9 3.6 ATGAAATACATAAA
Salmonella typhimurium LT2 STM0441 -268 3.4 TTTATTGATAATAA
Serratia proteamaculans 568 Spro_1088 -293 3.6 TTCTTTTACATTAA
Yersinia pestis KIM y1019 -223 3.5 TTGTTTTTCCTTAA
Position: 18
Score: 4.2
Sequence: ATGATTAAAATAAA
Locus tag: YPK_3305
YPK_3305 18 4.2 ATGATTAAAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nqrA
Ortholog function: Na-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00239 0 4.2 ATGATTAAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu1196 -205 4.1 TTGAACTAAATCAC
Proteus mirabilis HI4320 PMI0352 -205 4.2 TTGAGCTAAATCAC
Serratia proteamaculans 568 Spro_0953 0 4.3 ATGATTAAAATCAG
Yersinia pestis KIM y0951 18 4.2 ATGATTAAAATAAA
Position: -243
Score: 3.4
Sequence: TTAATTTAAAGCAC
Position: -154
Score: 3.3
Sequence: ATTACCTAAATAAA
Locus tag: YPK_3359
YPK_3359 -243 3.4 TTAATTTAAAGCAC
-154 3.3 ATTACCTAAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuB
Ortholog function: C4-dicarboxylate transporter DcuB
Edwardsiella tarda EIB202 ETAE_2844 -271 3.4 TTATTTTTTATTAA
Enterobacter sp. 638 Ent638_2479 -93 3.6 TTGAATTTATACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1533 -279 3.7 TTTATTTTCATGAA
-243 4.5 TAGATTTAGATCAA
Escherichia coli str. K-12 substr. MG1655 b4123 -283 4 CCGATAAATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04367 -210 3.4 TCTACTCATATCAA
Proteus mirabilis HI4320 PMI0389 -78 3.4 TTGTTTTTTTGCAA
Salmonella typhimurium LT2 STM4301 -72 3.5 TTCACAAAAATCAG
Serratia proteamaculans 568 Spro_3863 -189 3.8 CAGATTAAAATCAA
Yersinia pestis KIM y0901 -239 3.4 TTAATTTAAAGCAC
Position: -245
Score: 3.3
Sequence: TTGATAAAAAAGAC
Locus tag: YPK_3376
YPK_3376 -245 3.3 TTGATAAAAAAGAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydeJ
Ortholog function: Competence/damage-inducible protein CinA
Edwardsiella tarda EIB202 ETAE_2862 -5 3.4 TCGCTATGGAACAA
Enterobacter sp. 638 Ent638_3132 -81 4.1 TTCAGTAAAATCAA
Escherichia coli str. K-12 substr. MG1655 b1537 -195 3.5 TTGTTATAAGGCAT
7 3.5 TTAATAGAGATAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03032 -26 3.5 TTTATCCAGAGCAA
Proteus mirabilis HI4320 PMI0374 -19 3.5 TCGAGGTGAAACAA
Salmonella typhimurium LT2 STM2830 -347 3.3 TTGACCGCCGTCAT
Salmonella typhimurium LT2 STM1514 -238 3.6 GTCATATGCATCAA
Yersinia pestis KIM y0880 -297 3.7 TTGATCGCAGTTAA
Position: -269
Score: 3.5
Sequence: TTCATTCATCACAA
Position: -221
Score: 4.2
Sequence: TTGATTCCAGACAA
Locus tag: YPK_3394
YPK_3394 -269 3.5 TTCATTCATCACAA
-221 4.2 TTGATTCCAGACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dmsA
Ortholog function: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
Citrobacter koseri ATCC BAA-895 CKO_02177 -117 3.6 CTGATTTTTCTCAT
Enterobacter sp. 638 Ent638_1418 -3 3.8 TCTATGAAAATCAA
Escherichia coli str. K-12 substr. MG1655 b0894 -184 4.3 TTGATACCGAACAA
Salmonella typhimurium LT2 STM0964 -96 4.2
Yersinia pestis KIM y0864 -199 4.2 TTGATTCCAGACAA
Position: -152
Score: 4.7
Sequence: TTGATAAAGGTCAA
Locus tag: YPK_3411
YPK_3411 -152 4.7 TTGATAAAGGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhjA
Ortholog function: Cytochrome c551 peroxidase (EC 1.11.1.5)
Citrobacter koseri ATCC BAA-895 CKO_04957 -73 4.7 TTGATACTTATCAA
Edwardsiella tarda EIB202 ETAE_1715 -117 4.3 TTGACACTTATCAA
Escherichia coli str. K-12 substr. MG1655 b3518 -121 4.7 TTGATTCCTATCAA
Salmonella typhimurium LT2 STM3820 -110 4.7 TTGATACCAATCAA
Salmonella typhimurium LT2 STM3820 -110 4.7 TTGATACCAATCAA
Serratia proteamaculans 568 Spro_1968 -89 4.6 TTGATTATCGTCAA
Yersinia pestis KIM y0848 -152 4.7 TTGATAAAGGTCAA
Position: -135
Score: 4.3
Sequence: ATGATTTCGGTCAA
Locus tag: YPK_3492
YPK_3492 -135 4.3 ATGATTTCGGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhR
Ortholog function: Pyruvate dehydrogenase complex transcriptional regulator PdhR, GntR family
Citrobacter koseri ATCC BAA-895 CKO_03260 -116 4.7 CTGATTTCAATCAA
Edwardsiella tarda EIB202 ETAE_0658 -165 4.5 TTGATTGTTAACAA
-139 5 ATGATTTACATCAA
Enterobacter sp. 638 Ent638_0659 -116 4.7 CTGATTTCAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3790 -116 4.2 GTGATTTAGCTCAA
Escherichia coli str. K-12 substr. MG1655 b0113 -115 4.8 ATGATTTCAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00117 -114 4.7 CTGATTTCAATCAA
Proteus mirabilis HI4320 PMI2047 -245 4 ATGTGTTTAATCAA
-134 4.2 ATGATTTCGCTCAA
Salmonella typhimurium LT2 STM0151 -116 4.7 CTGATTTCAATCAA
Serratia proteamaculans 568 Spro_4012 -117 4.6 CTGATTTCGATCAA
Yersinia pestis KIM y0766 -135 4.4 ATGATTTCGGTCAA
Position: -298
Score: 5
Sequence: TTGATATATGTCAA
Locus tag: YPK_3606
YPK_3606 -298 5 TTGATATATGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcA
Ortholog function: Aerobic respiration control protein arcA
Citrobacter koseri ATCC BAA-895 CKO_03387 -291 5.1 TTGATATATGTCAA
Edwardsiella tarda EIB202 ETAE_0561 -300 5.1 TTGATATATGTCAA
Enterobacter sp. 638 Ent638_0562 -291 5.1 TTGATATATGTCAA
Erwinia amylovora ATCC 49946 EAM_0640 -399 4.5 TTGATGCAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3893 -339 5.1 TTGATATATGTCAA
Escherichia coli str. K-12 substr. MG1655 b4401 -291 5.1 TTGATATATGTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04856 -291 5.1 TTGATATATGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0562 -282 4.9 TTGATGTACGTCAA
Proteus mirabilis HI4320 PMI3719 -343 4 ATTACATAAATCAA
-282 4.6 TTGATATGTGTCAA
Salmonella typhimurium LT2 STM4598 -291 5.1 TTGATATATGTCAA
Serratia proteamaculans 568 Spro_0681 -299 5.1 TTGATATATGTCAA
Yersinia pestis KIM y3721 -298 5.1 TTGATATATGTCAA
Position: -192
Score: 4.6
Sequence: TTGTTCTAGGTCAA
Locus tag: YPK_3691
YPK_3691 -192 4.6 TTGTTCTAGGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdD
Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Citrobacter koseri ATCC BAA-895 CKO_03580 -235 4.2 TTGATGCAAATCAC
Edwardsiella tarda EIB202 ETAE_0423 -196 4.7 TTGATTCAGGTCAA
Enterobacter sp. 638 Ent638_0437 -244 4.7 TTGTTCTGAATCAA
-213 4.2 TTGATGCAAATCAC
Erwinia amylovora ATCC 49946 EAM_3059 -106 4.2 TTGCTTCAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0375 -182 4.8 TTGCTCTACATCAA
Escherichia coli str. K-12 substr. MG1655 b4238 -249 4.8 TTGAGCTACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04646 -248 4.2 TTGTTCTGGGTCAA
-217 4.2 TTGATGCAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu4499 -160 4.7 TTGTTTCAGATCAA
Proteus mirabilis HI4320 PMI3451 -184 4.9 TTGATTTAGATCAG
Salmonella typhimurium LT2 STM4452 -249 5 TTGTTCTACATCAA
-218 4.2 TTGATGCAAATCAC
Serratia proteamaculans 568 Spro_0525 -217 4.7 TTGTTCTACGTCAA
Yersinia pestis KIM y0733 -192 4.6 TTGTTCTAGGTCAA
Position: -277
Score: 3.8
Sequence: TTCAAATAAAACAA
Locus tag: YPK_3813
YPK_3813 -277 3.8 TTCAAATAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: frdA
Ortholog function: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Citrobacter koseri ATCC BAA-895 CKO_03678 -151 4 TTAATCAGAATCAA
Enterobacter sp. 638 Ent638_0343 -31 3.6 TTGCGGAATAACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4124 -239 4.1
Proteus mirabilis HI4320 PMI3588 -208 4
Salmonella typhimurium LT2 STM4343 -191 4.4 TTAATCAAAATCAA
Serratia proteamaculans 568 Spro_0419 -63 3.7 TTTATAAATATTAA
Position: -253
Score: 3.3
Sequence: CTGATATTTATAAT
Locus tag: YPK_3864
YPK_3864 -253 3.3 CTGATATTTATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ubiC
Ortholog function: Chorismate--pyruvate lyase (EC 4.1.3.40)
Erwinia amylovora ATCC 49946 EAM_0260 -194 3.8 CTGATATTAGTCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0626 -230 3.3 GTGACTAGGGTCAA
Escherichia coli str. K-12 substr. MG1655 b4039 -70 3.4 TTGCTTTACATCTC
Photorhabdus luminescens subsp. laumondii TTO1 plu4378 -253 3.8 TTATTTTTGGTCAA
Proteus mirabilis HI4320 PMI2753 -163 4.3 TTGTTTTTTCTCAA
Serratia proteamaculans 568 Spro_4464 -223 3.6 TTGCTGGAGATCAC
Yersinia pestis KIM y0568 -253 3.3 CTGATATTTATAAT
Position: -347
Score: 3.8
Sequence: GTGATTTATGTCAC
Position: -295
Score: 4.2
Sequence: GTGATTTAAATCAC
Locus tag: YPK_3951
YPK_3951 -347 3.8 GTGATTTATGTCAC
-295 4.2 GTGATTTAAATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ysgA
Ortholog function: Predcited carboxymethylenebutenolidase (EC 3.1.1.45)
Citrobacter koseri ATCC BAA-895 CKO_00172 -133 4.1 GTGATTTACATCAC
Erwinia amylovora ATCC 49946 EAM_0199 -199 3.6 TTAATCAAAATGAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0184 -155 3.8 GTGACTTAAATCAC
Salmonella typhimurium LT2 STM3967 -169 4.2 ATGACGTAAAACAA
Serratia proteamaculans 568 Spro_0243 -174 3.8 TTAATGCAGGTCAA
Yersinia pestis KIM y0443 -296 4.2 GTGATTTAAATCAC
Position: -151
Score: 3.8
Sequence: GTGATTTTGATCAC
Position: -145
Score: 4.3
Sequence: TTGATCACAATCAT
Position: -91
Score: 4.4
Sequence: TTGTTTCTTATCAA
Position: -87
Score: 4.1
Sequence: TTCTTATCAATCAA
Locus tag: YPK_3991
YPK_3991 -151 3.8 GTGATTTTGATCAC
-145 4.3 TTGATCACAATCAT
-91 4.4 TTGTTTCTTATCAA
-87 4.1 TTCTTATCAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpA
Ortholog function: Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00536 -30 3.8 ATGATAAAAAACGA
Edwardsiella tarda EIB202 ETAE_3115 -78 4.1 TTGCTCCTTATCAA
Enterobacter sp. 638 Ent638_2805 -69 4.3 ATGTTCGAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4165 -84 4.5 TTGCTCTTTATCAA
Escherichia coli str. K-12 substr. MG1655 b2241 -71 3.6 ATGCGCGAAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02647 -71 4.1 ATGCTCGAAATCAA
Proteus mirabilis HI4320 PMI3592 -107 4.2 TTGCTCATTATCAA
Salmonella typhimurium LT2 STM2284 -30 3.8 ATGATAAAAAACGA
Serratia proteamaculans 568 Spro_0200 -74 4.3 TTGTTCCTTATCAA
Yersinia pestis KIM y0404 -145 4.3 TTGATCACAATCAT
-91 4.4 TTGTTTCTTATCAA
Position: -148
Score: 4.2
Sequence: CTGACTTGAATCAA
Locus tag: YPK_4126
YPK_4126 -148 4.2 CTGACTTGAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pfkA
Ortholog function: 6-phosphofructokinase (EC 2.7.1.11)
Citrobacter koseri ATCC BAA-895 CKO_03085 -132 4 CTGACCTGAATCAA
Edwardsiella tarda EIB202 ETAE_3450 -223 4 CTGACCTGAATCAA
Enterobacter sp. 638 Ent638_4056 -174 4 CTGACCTGAATCAA
Erwinia amylovora ATCC 49946 EAM_0103 -31 4 ATTATTTGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4307 -140 4 CTGACCTGAATCAA
Escherichia coli str. K-12 substr. MG1655 b3916 -125 4 CTGACCTGAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04223 -123 4 CTGACCTGAATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4774 -203 4.1 TTGATCTCAAAAAA
Proteus mirabilis HI4320 PMI3203 -194 3.7 TTAATGCGCATCAA
Salmonella typhimurium LT2 STM4062 -126 4 CTGACCTGAATCAA
Serratia proteamaculans 568 Spro_4807 -145 4.1 GTGACTTGAATCAA
Yersinia pestis KIM y0059 -148 4.2 CTGACTTGAATCAA
Position: -28
Score: 3.7
Sequence: TTTAACTACAACAA
Locus tag: YPK_4220
YPK_4220 -28 3.7 TTTAACTACAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpB
Ortholog function: ATP synthase A chain (EC 3.6.3.14)
Citrobacter koseri ATCC BAA-895 CKO_00078 -122 4.2 TTGTTTGAAATCAC
Enterobacter sp. 638 Ent638_4126 -292 3.7 TTGATTAATATGAC
Erwinia amylovora ATCC 49946 EAM_3480 -124 3.9 TCGATTGAAATCAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4518 -191 3.7 ATGATTGTTAGCAA
Escherichia coli str. K-12 substr. MG1655 b3738 -123 4.2 TTGTTTGAAATCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04143 -122 4.2 TTGTTTGAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu0046 -225 3.9 ATTATTAAAAACAA
Proteus mirabilis HI4320 PMI3058 -130 4
Salmonella typhimurium LT2 STM3871 -122 4.2 TTGTTTGAAATCAC
Position: 4
Score: 3.6
Sequence: ATAATCTAAATAAA
Locus tag: YPK_4235
YPK_4235 4 3.6 ATAATCTAAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: phoU
Ortholog function: Phosphate transport system regulatory protein PhoU
Citrobacter koseri ATCC BAA-895 CKO_00061 -243 4.4 CTGTTTTTAATCAA
Edwardsiella tarda EIB202 ETAE_3542 -93 3.8 TTTACTGTCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4473 -52 3.6 CTGATTGATAACGA
Escherichia coli str. K-12 substr. MG1655 b3724 -138 3.8 CTTATTTAAATCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu0218 -33 3.9 TTGTTGATTCTCAA
Proteus mirabilis HI4320 PMI2897 -46 4 TTGATAGATGTCGA
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