Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fnr regulog to Klebsiella variicola At-22

Reference regulog properties
Source regulog: Fnr - Enterobacteriales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Energy metabolism; Anaerobic metabolism
Effector: Oxygen
Phylum: Gammaproteobacteria
Propagated regulon:
Target genome Klebsiella variicola At-22
Orthologous TF(s) Kvar_2828
Regulated genes 76
Built upon 685 sites [see more]
Predicted regulatory interactions in Klebsiella variicola At-22
Locus tag Position Score Sequence
Position: -6
Score: 4
Sequence: TTGATTATGCACAA
Locus tag: Kvar_0252
Kvar_0252 -6 4 TTGATTATGCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ECA0068
Ortholog function: Transcriptional regulator, LysR family
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03849 -6 4 TTGATTATGCACAA
Position: -198
Score: 3.8
Sequence: TTGCGGCATATCAA
Locus tag: Kvar_0323
Kvar_0323 -198 3.8 TTGCGGCATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Citrobacter koseri ATCC BAA-895 CKO_04830 -204 4.1 TTGAGCCATGTCAA
Enterobacter sp. 638 Ent638_3821 -133 4.2 TTGAGCAAGGTCAA
Escherichia coli str. K-12 substr. MG1655 b3408 -203 4.4 TTGAGCCACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03778 -198 3.8 TTGCGGCATATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0209 -206 3.5 TGGATGCAAATCAT
Proteus mirabilis HI4320 PMI2920 -190 5.2 TTGATGTACATCAA
Salmonella typhimurium LT2 STM3505 -204 4.4 TTGAGCCATATCAA
Serratia proteamaculans 568 Spro_4628 -284 3.8 CTGATTTAACTCAC
Yersinia pestis KIM y3912 -93 4 ATTATTTAAATCAT
Position: -72
Score: 5
Sequence: TTGATTTGCATCAA
Locus tag: Kvar_0349
Kvar_0349 -72 5 TTGATTTGCATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirB
Ortholog function: Nitrite reductase, large subunit (EC 1.7.1.4)
Citrobacter koseri ATCC BAA-895 CKO_04789 -72 5.4 TTGATTTACATCAA
Enterobacter sp. 638 Ent638_3793 -72 5 TTGATTTGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4079 -71 5.3 TTGATATACATCAA
Escherichia coli str. K-12 substr. MG1655 b3365 -72 5.4 TTGATTTACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03752 -72 5 TTGATTTGCATCAA
Proteus mirabilis HI4320 PMI1479 -72 5.1 TTGATATTCATCAA
Salmonella typhimurium LT2 STM3474 -72 5.4 TTGATTTACATCAA
Serratia proteamaculans 568 Spro_4595 -72 5 TTGATTTGCATCAA
Yersinia pestis KIM y3945 -71 5.4 TTGATTTACATCAA
Position: 0
Score: 3.8
Sequence: ATGTTGTACGACAA
Locus tag: Kvar_0475
Kvar_0475 0 3.8 ATGTTGTACGACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltB
Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Escherichia coli str. K-12 substr. MG1655 b3212 -156 3.9 TTGACCTGTATCAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03624 -114 3.9 ATGTTGTACGACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4009 -362 4.1 GTGATATAAATCAC
-334 4.1 CTGATCTATATCAC
Proteus mirabilis HI4320 PMI3677 -353 3.7 TTATCTAACATCAA
-252 4.1 TTTTTATTTATCAA
Serratia proteamaculans 568 Spro_4344 -330 3.6 ATATTAAATATCAA
Yersinia pestis KIM y0128 -72 3.8 CTGTCTGATATCAA
Position: -51
Score: 4
Sequence: TTGATCCAGGTCAT
Locus tag: Kvar_0476
Kvar_0476 -51 4 TTGATCCAGGTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhcC
Ortholog function: COG1242: Predicted Fe-S oxidoreductase
Enterobacter sp. 638 Ent638_3655 -65 3.7 TTTATTCAAATGAA
-32 4 TTGATCCAGGTCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0313 -70 3.7 TTGATCGCGGTCAT
Escherichia coli str. K-12 substr. MG1655 b3211 -75 4 TTGATCCAGGTCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03623 -75 4 TTGATCCAGGTCAT
Salmonella typhimurium LT2 STM3329 -75 4 TTGATCCAGGTCAT
Serratia proteamaculans 568 Spro_4343 -74 4.2 TTGATCTCTGTCAT
Yersinia pestis KIM y0127 -133 4.2 TTGATCTCTGTCAT
Position: -91
Score: 3.9
Sequence: TAGATAATTATCAA
Locus tag: Kvar_1025
Kvar_1025 -91 3.9 TAGATAATTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: norV
Ortholog function: Anaerobic nitric oxide reductase flavorubredoxin
Citrobacter koseri ATCC BAA-895 CKO_04064 -90 4.2 TTATTTAAAATCAA
Enterobacter sp. 638 Ent638_3182 -147 4.1 TTGACAGTAAACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03045 -53 3.7 TTGATATAAGCCAG
Salmonella typhimurium LT2 STM2840 -89 3.7 TCAATACAAATCAA
Position: -26
Score: 3.3
Sequence: TTTATCCAGACCAA
Locus tag: Kvar_1040
Kvar_1040 -26 3.3 TTTATCCAGACCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydeJ
Ortholog function: Competence/damage-inducible protein CinA
Edwardsiella tarda EIB202 ETAE_2862 -5 3.4 TCGCTATGGAACAA
Enterobacter sp. 638 Ent638_3132 -81 4.1 TTCAGTAAAATCAA
Escherichia coli str. K-12 substr. MG1655 b1537 -195 3.5 TTGTTATAAGGCAT
7 3.5 TTAATAGAGATAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03032 -26 3.5 TTTATCCAGAGCAA
Proteus mirabilis HI4320 PMI0374 -19 3.5 TCGAGGTGAAACAA
Salmonella typhimurium LT2 STM2830 -347 3.3 TTGACCGCCGTCAT
Salmonella typhimurium LT2 STM1514 -238 3.6 GTCATATGCATCAA
Yersinia pestis KIM y0880 -297 3.7 TTGATCGCAGTTAA
Position: -205
Score: 5.4
Sequence: TTGATATAAATCAA
Position: -152
Score: 5.1
Sequence: TTGTTTTACATCAA
Locus tag: Kvar_1160
Kvar_1160 -205 5.4 TTGATATAAATCAA
-152 5.1 TTGTTTTACATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ung
Ortholog function: Uracil-DNA glycosylase (EC 3.2.2.27)
Citrobacter koseri ATCC BAA-895 CKO_00204 -209 5.6 TTGATTTAAATCAA
-156 5.1 TTGTTTTACATCAA
Edwardsiella tarda EIB202 ETAE_2734 -396 4.1 TTGAGATAGAGCAA
-280 5.4 TTGATCTAAATCAA
-227 4.7 ATGTTTTACATCAA
Enterobacter sp. 638 Ent638_3065 -194 5 TTGACCTAAATCAA
-142 5.1 TTGTTTTATATCAA
34 4.2 CTGATGAAAAACAA
Erwinia amylovora ATCC 49946 EAM_2526 -177 4.9 TTGATGCAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3289 -228 5.1 TTGACTTAAATCAA
-175 5.1 TTGTTTTATATCAA
Escherichia coli str. K-12 substr. MG1655 b2580 -197 5.6 TTGATTTAAATCAA
-144 5.1 TTGTTTTACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02903 -206 5.5 TTGATATAAATCAA
-153 5.1 TTGTTTTACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3371 -233 4.1 TTGATTCAGAACAG
Proteus mirabilis HI4320 PMI1899 -221 5.1 TTGATAAATATCAA
-168 5.2 TTGTTTTAAATCAA
Salmonella typhimurium LT2 STM2647 -208 5.6 TTGATTTAAATCAA
-155 5.1 TTGTTTTACATCAA
Serratia proteamaculans 568 Spro_3683 -222 5 TTGATTAAAGTCAA
-169 4.4 ATGTTTTATGTCAA
Yersinia pestis KIM y1281 -213 5.2 TTGATTCAAATCAA
-160 4.7 ATGTTTTATATCAA
Position: -120
Score: 5.5
Sequence: TTGATTTATATCAA
Locus tag: Kvar_1161
Kvar_1161 -120 5.5 TTGATTTATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfiD
Ortholog function: Stress-induced alternate pyruvate formate-lyase subunit
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02902 -173 5.1 TTGATGTAAAACAA
-120 5.5 TTGATTTATATCAA
Position: -145
Score: 5.5
Sequence: TTGATTTATATCAA
Locus tag: Kvar_1226
Kvar_1226 -145 5.5 TTGATTTATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfgF
Ortholog function: Predicted cytochrome C-type biogenesis protein
Citrobacter koseri ATCC BAA-895 CKO_00285 -142 5.4 TTGATATATATCAA
Escherichia coli str. K-12 substr. MG1655 b2503 -141 5.4 TTGATATATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02828 -144 5.5 TTGATTTATATCAA
Salmonella typhimurium LT2 STM2503 -143 5.1 TTGACTTAAATCAA
Position: -96
Score: 5
Sequence: TTGATATACGTCAA
Locus tag: Kvar_1233
Kvar_1233 -96 5 TTGATATACGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: upp
Ortholog function: Uracil phosphoribosyltransferase (EC 2.4.2.9)
Citrobacter koseri ATCC BAA-895 CKO_00293 -103 4.6 TTGATCCATGTCAA
Edwardsiella tarda EIB202 ETAE_1087 -97 4.5 TTGATTGAGATCAT
Enterobacter sp. 638 Ent638_2986 -97 4.4 TTGATCACCGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1255 -169 4.3 TTGATCTGGATCAG
Escherichia coli str. K-12 substr. MG1655 b2498 -95 4.6 TTGACTAAAGTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02821 -96 5 TTGATATACGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2759 -103 5.1 TTGATGAAAATCAA
Proteus mirabilis HI4320 PMI1574 -97 5.1 TTGATCAATATCAA
Salmonella typhimurium LT2 STM2498 -103 4.6 TTGATCCAGGTCAA
Yersinia pestis KIM y1408 -98 4.4 TTGATCTGAATCAG
Position: -91
Score: 4.1
Sequence: ATGATGTTAATCAT
Locus tag: Kvar_1367
Kvar_1367 -91 4.1 ATGATGTTAATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: Acetate kinase (EC 2.7.2.1)
Citrobacter koseri ATCC BAA-895 CKO_00498 -92 4.1 ATGATGTTAATCAT
Edwardsiella tarda EIB202 ETAE_2397 -93 4.1 ATGATGTTAATCAT
Enterobacter sp. 638 Ent638_2840 -92 4.1 ATGATGTTAATCAT
Erwinia amylovora ATCC 49946 EAM_2301 -119 3.9 TTGCTTTCGGACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3039 -91 4.1 ATGATGTTAATCAT
Escherichia coli str. K-12 substr. MG1655 b2296 -92 4.1 ATGATGTTAATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02687 -91 4.1 ATGATGTTAATCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu3095 -117 4.1 ATGATGTTAATCAT
Proteus mirabilis HI4320 PMI1771 -165 3.7 TTGATGATTGGCAA
Salmonella typhimurium LT2 STM2337 -92 4.1 ATGATGTTAATCAT
Serratia proteamaculans 568 Spro_3316 -121 4.1 ATGATGTTAATCAT
Yersinia pestis KIM y1622 -163 4.1 ATGATGTTAATCAT
Position: -303
Score: 3.6
Sequence: TTGATTTACGACGG
Position: -223
Score: 3.5
Sequence: TTAATGTTAATGAA
Locus tag: Kvar_1375
Kvar_1375 -303 3.6 TTGATTTACGACGG
-223 3.5 TTAATGTTAATGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nuoA
Ortholog function: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00508 -198 4 TCGATGTAAATTAA
Edwardsiella tarda EIB202 ETAE_2385 -292 3.7 TTGATGTAAACGAA
Escherichia coli str. K-12 substr. MG1655 b2288 -433 3.7 ATGATGTTAAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02678 -392 3.6 TTGATTTACGACGG
Photorhabdus luminescens subsp. laumondii TTO1 plu3089 -207 3.8 TTGTTATTTGTAAA
Salmonella typhimurium LT2 STM2328 -199 4.6 TTGATGTAAATTAA
Serratia proteamaculans 568 Spro_3308 -280 3.8 TTTCTACACATCAA
Yersinia pestis KIM y1630 -465 3.6 TTTTATTAAAACAA
Position: -53
Score: 3.7
Sequence: TCAATCTACAACAA
Locus tag: Kvar_1377
Kvar_1377 -53 3.7 TCAATCTACAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nuoD
Ortholog function: NADH-ubiquinone oxidoreductase chains C and D (EC 1.6.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00510 -198 4 TCGATGTAAATTAA
Edwardsiella tarda EIB202 ETAE_2383 -292 3.7 TTGATGTAAACGAA
Escherichia coli str. K-12 substr. MG1655 b2286 -433 3.7 ATGATGTTAAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02676 -392 3.6 TTGATTTACGACGG
Photorhabdus luminescens subsp. laumondii TTO1 plu3087 -207 3.8 TTGTTATTTGTAAA
Salmonella typhimurium LT2 STM2326 -199 4.6 TTGATGTAAATTAA
Serratia proteamaculans 568 Spro_3306 -280 3.8 TTTCTACACATCAA
Yersinia pestis KIM y1632 -465 3.6 TTTTATTAAAACAA
Position: -173
Score: 3.6
Sequence: TCGTTGAAAATCAG
Position: 15
Score: 3.5
Sequence: TTGATATTAATCCC
Locus tag: Kvar_1386
Kvar_1386 -173 3.6 TCGTTGAAAATCAG
15 3.5 TTGATATTAATCCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nuoM
Ortholog function: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00519 -198 4 TCGATGTAAATTAA
Edwardsiella tarda EIB202 ETAE_2374 -292 3.7 TTGATGTAAACGAA
Escherichia coli str. K-12 substr. MG1655 b2277 -433 3.7 ATGATGTTAAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02667 -392 3.6 TTGATTTACGACGG
Photorhabdus luminescens subsp. laumondii TTO1 plu3078 -207 3.8 TTGTTATTTGTAAA
Salmonella typhimurium LT2 STM2317 -199 4.6 TTGATGTAAATTAA
Serratia proteamaculans 568 Spro_3297 -280 3.8 TTTCTACACATCAA
Yersinia pestis KIM y1641 -465 3.6 TTTTATTAAAACAA
Position: -71
Score: 4.1
Sequence: ATGCTCGAAATCAA
Position: -67
Score: 3.5
Sequence: TCGAAATCAAACAA
Locus tag: Kvar_1406
Kvar_1406 -71 4.1 ATGCTCGAAATCAA
-67 3.5 TCGAAATCAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpA
Ortholog function: Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00536 -30 3.8 ATGATAAAAAACGA
Edwardsiella tarda EIB202 ETAE_3115 -78 4.1 TTGCTCCTTATCAA
Enterobacter sp. 638 Ent638_2805 -69 4.3 ATGTTCGAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4165 -84 4.5 TTGCTCTTTATCAA
Escherichia coli str. K-12 substr. MG1655 b2241 -71 3.6 ATGCGCGAAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02647 -71 4.1 ATGCTCGAAATCAA
Proteus mirabilis HI4320 PMI3592 -107 4.2 TTGCTCATTATCAA
Salmonella typhimurium LT2 STM2284 -30 3.8 ATGATAAAAAACGA
Serratia proteamaculans 568 Spro_0200 -74 4.3 TTGTTCCTTATCAA
Yersinia pestis KIM y0404 -145 4.3 TTGATCACAATCAT
-91 4.4 TTGTTTCTTATCAA
Position: -214
Score: 3.8
Sequence: TTGATTTCGAGCAT
Locus tag: Kvar_1407
Kvar_1407 -214 3.8 TTGATTTCGAGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpT
Ortholog function: Glycerol-3-phosphate transporter
Citrobacter koseri ATCC BAA-895 CKO_00537 -257 3.7 TCGTTTTTTATCAT
Edwardsiella tarda EIB202 ETAE_3116 -301 3.8 GTGATCAAAATCAC
Enterobacter sp. 638 Ent638_2804 -197 4.2 TTGATTTCGAACAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4166 -249 4.3 TTGATAAAGAGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02646 -214 3.8 TTGATTTCGAGCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu4119 -306 4.2 TTGATAAAGAACAG
Proteus mirabilis HI4320 PMI3591 -287 4 TTGATAATGAGCAA
-45 4.9 TTGTTTAATATCAA
Salmonella typhimurium LT2 STM2283 -256 3.7 TCGTTTTTTATCAT
Serratia proteamaculans 568 Spro_0199 -305 4.3 TTGATAAGGAACAA
Position: -65
Score: 3.7
Sequence: TTGTTATATATTAT
Locus tag: Kvar_1562
Kvar_1562 -65 3.7 TTGTTATATATTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gnd
Ortholog function: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Citrobacter koseri ATCC BAA-895 CKO_00756 -337 4 TTGATTACTATCTA
Enterobacter sp. 638 Ent638_2642 -112 3.7 GTGACATAGATCAG
Erwinia amylovora ATCC 49946 EAM_2150 -264 3.8 TTCTCTTAAGTCAA
-169 4 TTTTTTTTAAACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1444 -228 3.3 TTGAGTGGTAACAT
Escherichia coli str. K-12 substr. MG1655 b2029 -375 3.4 ATGGCTTCGATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02499 -322 3.7 TTTTTATAGTTCAA
Proteus mirabilis HI4320 PMI0655 -7 3.7 TTATTTCATGTCAA
Serratia proteamaculans 568 Spro_1608 -384 3.3 ATTATTTGAATTAA
Position: -143
Score: 4.4
Sequence: TTGTCTGAAATCAA
Locus tag: Kvar_1947
Kvar_1947 -143 4.4 TTGTCTGAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemA
Ortholog function: Glutamyl-tRNA reductase (EC 1.2.1.70)
Enterobacter sp. 638 Ent638_2338 -82 4.3 TTGTCTTAAATCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2189 -134 4.8
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02235 -143 4.4 TTGTCTGAAATCAA
Salmonella typhimurium LT2 STM1777 -131 4.3 TTGTCTTAAATCAT
Position: -251
Score: 5.4
Sequence: TTGATATAAATCAA
Locus tag: Kvar_1966
Kvar_1966 -251 5.4 TTGATATAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narX
Ortholog function: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
Enterobacter sp. 638 Ent638_2317 -251 5.5 TTGATATAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2029 -268 4.9 TTGATGCAAATCAA
Escherichia coli str. K-12 substr. MG1655 b1222 -279 5.4 TTGATGTAAATCAA
-241 4.6 TTGATATTTATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02216 -251 5.5 TTGATATAAATCAA
Proteus mirabilis HI4320 PMI3569 -235 4.5 ATGATCTGCATCAA
Salmonella typhimurium LT2 STM1766 -281 5.5 TTGATATAAATCAA
Serratia proteamaculans 568 Spro_2899 -301 5.4 TTGATGTAAATCAA
Position: -233
Score: 4.7
Sequence: TTGATCTAAATCAC
Locus tag: Kvar_1983
Kvar_1983 -233 4.7 TTGATCTAAATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Citrobacter koseri ATCC BAA-895 CKO_01318 -238 4.1 TTGATCTGGATCAC
Enterobacter sp. 638 Ent638_2304 -249 4.5 TTGATTCAGATCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2326 -311 3.6 TCGATGTTGATCAC
-305 3.8 TTGATCACAAAAAA
Escherichia coli str. K-12 substr. MG1655 b1241 -237 4.3 TTGATTTGGATCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02199 -233 4.7 TTGATCTAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu2496 -134 4.5 GTGATTAAGATCAA
Proteus mirabilis HI4320 PMI1486 -242 3.8 GTGATGTAGATCAC
Salmonella typhimurium LT2 STM1749 -238 4.7 TTGATTTAGATCAC
Serratia proteamaculans 568 Spro_2704 -274 4.4 ATGATTTAAATCAC
Position: -323
Score: 3.3
Sequence: GTGATACAAGTCAC
Locus tag: Kvar_2191
Kvar_2191 -323 3.3 GTGATACAAGTCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: KPN_02084
Ortholog function: hypothetical protein
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02084 -326 3.4 GTGATACAAGTCAC
Position: -246
Score: 4.1
Sequence: TTGTCATATCTCAA
Locus tag: Kvar_2482
Kvar_2482 -246 4.1 TTGTCATATCTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: katG
Ortholog function: Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7)
Escherichia coli str. K-12 substr. MG1655 b3942 -141 4.4 TTAATTAAGATCAA
-126 3.8 TTGATCTACATCTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01819 -248 4.1 TTGTCATATCTCAA
Salmonella typhimurium LT2 STM4106 -126 3.8 TTGATCTACATCTC
Serratia proteamaculans 568 Spro_3192 -139 3.7 TTATTTAAAATCAG
Position: -310
Score: 3.3
Sequence: CTTATATTCATCAG
Locus tag: Kvar_2807
Kvar_2807 -310 3.3 CTTATATTCATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuS
Ortholog function: Fumarate respiration sensor kinase protein DcuS
Citrobacter koseri ATCC BAA-895 CKO_03745 -199 3.3 GTGATCCCCATCAG
Enterobacter sp. 638 Ent638_2555 -122 3.7 TTTATATAGGTCAC
Erwinia amylovora ATCC 49946 EAM_1542 -115 3.4 TTGCTTAAGATCGT
Escherichia coli str. K-12 substr. MG1655 b4125 -311 3.6 TTGAGATTAAATAA
Salmonella typhimurium LT2 STM4304 -274 4.8 TTGATTGTGATCAA
-177 3.9 CTGATGAAAATAAA
Serratia proteamaculans 568 Spro_1959 -188 3.3 TTAATGGCTATCAT
Position: -33
Score: 4.6
Sequence: TTGACCAATATCAA
Locus tag: Kvar_2828
Kvar_2828 -33 4.6 TTGACCAATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fnr
Ortholog function: Fumarate and nitrate reduction regulatory protein
Citrobacter koseri ATCC BAA-895 CKO_01409 -83 3.8 TTGATGTAAAGTAA
Edwardsiella tarda EIB202 ETAE_1744 -133 3.4 GTGCTATACATCAC
-33 4.6 TTGACCGATATCAA
Enterobacter sp. 638 Ent638_1853 -33 4.6 TTGACCAATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2207 -34 4.6 TTGACCAATATCAA
Escherichia coli str. K-12 substr. MG1655 b1334 -33 4.7 TTGACAAATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01530 -327 4.6 TTGACCAATATCAA
-185 3.5 ATGAGCTTGATCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu2179 -35 3.4 TTGAAGGATATGAA
Proteus mirabilis HI4320 PMI1203 -40 4.5 TTGACACATATCAA
Salmonella typhimurium LT2 STM1660.S -33 4.7 TTGACAAATATCAA
Serratia proteamaculans 568 Spro_2582 -34 4.4 TTGACGCATATCAA
Yersinia pestis KIM y2132 -32 4.4 TTGACGCATATCAA
Position: -116
Score: 4.1
Sequence: TTAATCTGGATCAA
Locus tag: Kvar_3067
Kvar_3067 -116 4.1 TTAATCTGGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W; colicin S4 receptor; putative transporter
Citrobacter koseri ATCC BAA-895 CKO_01333 -117 4.1 TTAATCTGGATCAA
Edwardsiella tarda EIB202 ETAE_1528 -157 4.9 TTGATGTCTATCAA
Enterobacter sp. 638 Ent638_2283 -117 4.1 TTAATCTGGATCAA
Erwinia amylovora ATCC 49946 EAM_1884 -160 5.4 TTGATCTAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2303 -160 4.8 TTGATCTGGATCAA
Escherichia coli str. K-12 substr. MG1655 b1256 -162 4.8 TTGATTTAAATCAC
-117 4.1 TTAATCCAGATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01248 -247 4.2 TTGATTTCACTCAT
-80 4.1 TTAATCTGGATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2478 -160 5 TTGATTTGGATCAA
Proteus mirabilis HI4320 PMI1350 -164 4.8 TTGATGTGGATCAA
Salmonella typhimurium LT2 STM1732 -117 4.1 TTAATCTGGATCAA
Serratia proteamaculans 568 Spro_2674 -131 5 TTGATTCAGATCAA
Yersinia pestis KIM y2044 -171 3.6 ATGATAAATGGCAA
-147 4.4 ATGATCCAGATCAA
Position: -148
Score: 4.8
Sequence: TTGATGCATATCAA
Locus tag: Kvar_3274
Kvar_3274 -148 4.8 TTGATGCATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase (EC 1.6.99.3)
Citrobacter koseri ATCC BAA-895 CKO_01946 -163 5.2 TTGATGTACATCAA
Edwardsiella tarda EIB202 ETAE_2070 -162 5.1 TTGATTTGAATCAA
Enterobacter sp. 638 Ent638_1624 -149 5.1 TTGATTCATATCAA
Erwinia amylovora ATCC 49946 EAM_1473 -146 4.2 TTGACCAGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1815 -149 5.4 TTGATATATATCAA
Escherichia coli str. K-12 substr. MG1655 b1109 -150 5.2 TTGATTAACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01106 -148 4.8 TTGATGCACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2821 -150 4.2 TTGATGTTGTTCAA
Proteus mirabilis HI4320 PMI0875 -153 5.5 TTGATATAAATCAA
Salmonella typhimurium LT2 STM1211 -150 4.8 TTGATGCACATCAA
Serratia proteamaculans 568 Spro_1926 -149 5.2 TTGATGTACATCAA
Yersinia pestis KIM y1777 -148 5.4 TTGATATATATCAA
Position: -103
Score: 3.3
Sequence: TTAACATTTGACAA
Locus tag: Kvar_3358
Kvar_3358 -103 3.3 TTAACATTTGACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: puuA
Ortholog function: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11)
Escherichia coli str. K-12 substr. MG1655 b1297 -101 3.3 TTAACATTTGACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01021 -103 3.3 TTAACATTTGACAA
Serratia proteamaculans 568 Spro_2068 31 3.7 TTGTTCAGCATCAT
Position: -181
Score: 3.8
Sequence: TTGACCTGCGACAA
Locus tag: Kvar_3412
Kvar_3412 -181 3.8 TTGACCTGCGACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ssuE
Ortholog function: FMN reductase (EC 1.5.1.29)
Citrobacter koseri ATCC BAA-895 CKO_02124 -43 3.7 TTAATGAAAATCGA
Enterobacter sp. 638 Ent638_1456 -181 3.5 TTGACCTGAGGCAA
Escherichia coli str. K-12 substr. MG1655 b0937 -278 3.6 GCCATTTAAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00973 -182 3.8 TTGACCTGCGACAA
Serratia proteamaculans 568 Spro_1739 -256 4.6 TTGATTAAAAGCAA
Yersinia pestis KIM y0246 -252 3.7 GTGATCTGGCTCAA
Position: -75
Score: 4.9
Sequence: ATGATCTATATCAA
Locus tag: Kvar_3444
Kvar_3444 -75 4.9 ATGATCTATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: focA
Ortholog function: Formate efflux transporter (TC 2.A.44 family)
Citrobacter koseri ATCC BAA-895 CKO_02167 -116 4.9 ATGATCTATATCAA
Edwardsiella tarda EIB202 ETAE_2181 -117 4.2 ATGATCCATGTCAA
Enterobacter sp. 638 Ent638_1424 -74 4.9 ATGATCTATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2596 -228 4 ATGATTTTTATTAA
-75 4.5 ATGATCCACATCAA
Escherichia coli str. K-12 substr. MG1655 b0904 -74 4.9 ATGATCTATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00932 -117 4.9 ATGATCTATATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1614 -267 4.1 TTTATTTGCAACAA
-159 4.7 TTTATTAAAATCAA
-84 4.9 ATGATCTATATCAA
Proteus mirabilis HI4320 PMI0706 -159 4.1 TTATTATTAATCAA
-85 4.5 ATGATCCATATCAA
Salmonella typhimurium LT2 STM0974 -74 4.9 ATGATCTATATCAA
Serratia proteamaculans 568 Spro_1703 -143 3.9 ATAATTTAACTCAA
-81 4.6 ATGATCCAAATCAA
Yersinia pestis KIM y2789 -80 4.5 ATGATCCATATCAA
Position: -109
Score: 4.4
Sequence: TTGCGCTAAATCAA
Locus tag: Kvar_3469
Kvar_3469 -109 4.4 TTGCGCTAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Citrobacter koseri ATCC BAA-895 CKO_02206 -76 4.4 TTGCGCTAAATCAA
Enterobacter sp. 638 Ent638_1390 -110 4.4 TTGCGCTAAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00907 -76 4.4 TTGCGCTAAATCAA
Position: -69
Score: 4.7
Sequence: TTGATTTGCGTCAA
Locus tag: Kvar_3520
Kvar_3520 -69 4.7 TTGATTTGCGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybiY
Ortholog function: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Citrobacter koseri ATCC BAA-895 CKO_02286 -70 4.1 TTGACCTGCGTCAA
Edwardsiella tarda EIB202 ETAE_0451 -71 5.2 TTGATCAAAATCAA
Enterobacter sp. 638 Ent638_1318 -68 4.4 TTGACGCACATCAA
Escherichia coli str. K-12 substr. MG1655 b0824 -67 4.4 TTGACGCACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00858 -69 4.7 TTGATTTGCGTCAA
Salmonella typhimurium LT2 STM0844 -69 4.4 TTGACGCACATCAA
Serratia proteamaculans 568 Spro_2641 -76 5.1 TTGATCGAAATCAA
Position: -257
Score: 4
Sequence: CTGACCGACATCAA
Position: -182
Score: 3.6
Sequence: ATGTTATATAACGA
Locus tag: Kvar_3571
Kvar_3571 -257 4 CTGACCGACATCAA
-182 3.6 ATGTTATATAACGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaA
Ortholog function: Molybdenum cofactor biosynthesis protein MoaA
Citrobacter koseri ATCC BAA-895 CKO_02345 -253 4.7 CTGATGTATATCAA
Edwardsiella tarda EIB202 ETAE_2347 -380 3.9 GTGACATGTATCAA
Enterobacter sp. 638 Ent638_1273 -236 4.4 ATGACGTATATCAA
Erwinia amylovora ATCC 49946 EAM_1218 -212 4.2 TCGCTATATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2817 -321 3.5 ATGACCTGAGACAA
Escherichia coli str. K-12 substr. MG1655 b0781 -263 4.9 ATGATGTATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00810 -257 4 CTGACCGACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1499 -155 3.7 TCGTTTTACATTAA
Salmonella typhimurium LT2 STM0802 -264 5 ATGATATATATCAA
Serratia proteamaculans 568 Spro_1320 -312 3.7 GTGATTCCGGTCAA
Yersinia pestis KIM y3023 -310 4.3 GTGATTTTAAACAA
Position: -91
Score: 4
Sequence: TTGATGTCGGTCAG
Locus tag: Kvar_3572
Kvar_3572 -91 4 TTGATGTCGGTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybhK
Ortholog function: Predicted transferase, NAD(P)-binding
Edwardsiella tarda EIB202 ETAE_2348 -92 3.9 TTGATACATGTCAC
Enterobacter sp. 638 Ent638_1272 -90 4.5 TTGATATACGTCAT
Erwinia amylovora ATCC 49946 EAM_1217 -88 4 TTGATATATAGCGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2818 -117 3.7 ATGAGCTTACTCAA
Escherichia coli str. K-12 substr. MG1655 b0780 -147 4.8 TTGATATACATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00809 -91 4 TTGATGTCGGTCAG
Salmonella typhimurium LT2 STM0801 -146 4.8 TTGATATATATCAT
Yersinia pestis KIM y3024 -190 4.2 TTGTTTAAAATCAC
Position: -349
Score: 5.5
Sequence: TTGATTTATATCAA
Locus tag: Kvar_3634
Kvar_3634 -349 5.5 TTGATTTATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydA
Ortholog function: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
Enterobacter sp. 638 Ent638_1230 -352 5.6 TTGATTTAAATCAA
-300 3.8 TTGTCCCCGATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00736 -345 5.5 TTGATTTATATCAA
-293 4.1 TTGTCTCAAGTCAA
Position: -287
Score: 4
Sequence: TTAATATTTGTCAA
Position: 25
Score: 3.6
Sequence: ATGTGAAAAAACAA
Locus tag: Kvar_3643
Kvar_3643 -287 4 TTAATATTTGTCAA
25 3.6 ATGTGAAAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Citrobacter koseri ATCC BAA-895 CKO_02438 25 3.6 ATGTGAAAAAACAA
Edwardsiella tarda EIB202 ETAE_2588 10 4
Escherichia coli str. K-12 substr. MG1655 b0721 10 3.6 ATGTGAAAAAACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00728 -104 3.6 ATGTGAAAAAACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1426 -127 4 TTGTGAAAAAACAA
Proteus mirabilis HI4320 PMI0565 -2 4 TTGTGAAAAAACAA
Salmonella typhimurium LT2 STM0732 10 3.6 ATGTGAAAAAACAA
Serratia proteamaculans 568 Spro_1263 -249 4.1 GTGATCTAAATCAC
Yersinia pestis KIM y3071 -224 3.8 ATGTTATCAATCAG
Position: -104
Score: 4.5
Sequence: TTGATTTGCATCAG
Locus tag: Kvar_3712
Kvar_3712 -104 4.5 TTGATTTGCATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuC
Ortholog function: C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1)
Citrobacter koseri ATCC BAA-895 CKO_02537 -106 4.7 TTGATTTTAATCAG
Edwardsiella tarda EIB202 ETAE_1192 -147 4.1 TTGACCAATATCAG
Enterobacter sp. 638 Ent638_1152 -102 4.4 TTGATTTTAGTCAT
Escherichia coli str. K-12 substr. MG1655 b0621 -103 4.7 TTGATTTTAATCAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00654 -104 4.5 TTGATTTGCATCAG
Proteus mirabilis HI4320 PMI0652 -127 4.5 TTGATATATGTCAT
Salmonella typhimurium LT2 STM0627 -138 3.6 TTCATCTTTAGCAA
-101 4.1 GTGATTTTAATCAG
Serratia proteamaculans 568 Spro_1579 -107 4 TTGACGGATATCAT
Position: -47
Score: 3.7
Sequence: TTTATACTGAACAA
Locus tag: Kvar_3720
Kvar_3720 -47 3.7 TTTATACTGAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybdN
Ortholog function: Predicted sulfotransferase
Citrobacter koseri ATCC BAA-895 CKO_02557 -295 3.8 TTAATATTGATCAG
Escherichia coli str. K-12 substr. MG1655 b0602 -359 3.7 TTGCTGACAATCAT
-150 4.2 TTGATATATAACTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00647 -221 3.5 ACGATCTACATTAA
Position: -113
Score: 3.9
Sequence: TTTTTTACCATCAA
Position: -59
Score: 4
Sequence: TTGCTTTATATCCA
Locus tag: Kvar_3968
Kvar_3968 -113 3.9 TTTTTTACCATCAA
-59 4 TTGCTTTATATCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnK
Ortholog function: Nitrogen assimilation regulatory protein
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00413 -59 4
Proteus mirabilis HI4320 PMI0126 0 3.8 ATGAAATATATCAT
Position: -13
Score: 3.7
Sequence: TTGAGGTCGTTCAA
Locus tag: Kvar_3987
Kvar_3987 -13 3.7 TTGAGGTCGTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoA
Ortholog function: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00394 -49 3.7 TTGAGGTCGTTCAA
Position: 0
Score: 4.2
Sequence: ATGATTAAAATCAC
Locus tag: Kvar_4148
Kvar_4148 0 4.2 ATGATTAAAATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nqrA
Ortholog function: Na-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00239 0 4.2 ATGATTAAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu1196 -205 4.1 TTGAACTAAATCAC
Proteus mirabilis HI4320 PMI0352 -205 4.2 TTGAGCTAAATCAC
Serratia proteamaculans 568 Spro_0953 0 4.3 ATGATTAAAATCAG
Yersinia pestis KIM y0951 18 4.2 ATGATTAAAATAAA
Position: -114
Score: 4.7
Sequence: CTGATTTCAATCAA
Locus tag: Kvar_4265
Kvar_4265 -114 4.7 CTGATTTCAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhR
Ortholog function: Pyruvate dehydrogenase complex transcriptional regulator PdhR, GntR family
Citrobacter koseri ATCC BAA-895 CKO_03260 -116 4.7 CTGATTTCAATCAA
Edwardsiella tarda EIB202 ETAE_0658 -165 4.5 TTGATTGTTAACAA
-139 5 ATGATTTACATCAA
Enterobacter sp. 638 Ent638_0659 -116 4.7 CTGATTTCAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3790 -116 4.2 GTGATTTAGCTCAA
Escherichia coli str. K-12 substr. MG1655 b0113 -115 4.8 ATGATTTCAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00117 -114 4.7 CTGATTTCAATCAA
Proteus mirabilis HI4320 PMI2047 -245 4 ATGTGTTTAATCAA
-134 4.2 ATGATTTCGCTCAA
Salmonella typhimurium LT2 STM0151 -116 4.7 CTGATTTCAATCAA
Serratia proteamaculans 568 Spro_4012 -117 4.6 CTGATTTCGATCAA
Yersinia pestis KIM y0766 -135 4.4 ATGATTTCGGTCAA
Position: -125
Score: 3.6
Sequence: TTAATTAACAACAT
Locus tag: Kvar_4355
Kvar_4355 -125 3.6 TTAATTAACAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: citC
Ortholog function: [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22)
Citrobacter koseri ATCC BAA-895 CKO_02541 -184 4.1 GTGAAATAAATCAA
Enterobacter sp. 638 Ent638_3375 19 4.1 TTTATAAAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2574 -93 3.8 TTGAGCCAAATAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00034 -125 3.6 TTAATTAACAACAT
Salmonella typhimurium LT2 STM0058 -227 4.2 TTGATGGGTAACAA
Position: -248
Score: 4.2
Sequence: TTGTTCTGGGTCAA
Position: -217
Score: 4.2
Sequence: TTGATGCAAATCAC
Locus tag: Kvar_4605
Kvar_4605 -248 4.2 TTGTTCTGGGTCAA
-217 4.2 TTGATGCAAATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdD
Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Citrobacter koseri ATCC BAA-895 CKO_03580 -235 4.2 TTGATGCAAATCAC
Edwardsiella tarda EIB202 ETAE_0423 -196 4.7 TTGATTCAGGTCAA
Enterobacter sp. 638 Ent638_0437 -244 4.7 TTGTTCTGAATCAA
-213 4.2 TTGATGCAAATCAC
Erwinia amylovora ATCC 49946 EAM_3059 -106 4.2 TTGCTTCAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0375 -182 4.8 TTGCTCTACATCAA
Escherichia coli str. K-12 substr. MG1655 b4238 -249 4.8 TTGAGCTACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04646 -248 4.2 TTGTTCTGGGTCAA
-217 4.2 TTGATGCAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu4499 -160 4.7 TTGTTTCAGATCAA
Proteus mirabilis HI4320 PMI3451 -184 4.9 TTGATTTAGATCAG
Salmonella typhimurium LT2 STM4452 -249 5 TTGTTCTACATCAA
-218 4.2 TTGATGCAAATCAC
Serratia proteamaculans 568 Spro_0525 -217 4.7 TTGTTCTACGTCAA
Yersinia pestis KIM y0733 -192 4.6 TTGTTCTAGGTCAA
Position: 0
Score: 3.5
Sequence: ATGTTAAACAACAT
Locus tag: Kvar_4722
Kvar_4722 0 3.5 ATGTTAAACAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aspA
Ortholog function: Aspartate ammonia-lyase (EC 4.3.1.1)
Edwardsiella tarda EIB202 ETAE_0311 19 3.5 TTGAAGAAGATCTA
Enterobacter sp. 638 Ent638_0326 -184 3.6 TTAATAATTATCAT
Erwinia amylovora ATCC 49946 EAM_0416 -194 4 TTGATATAACACGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0621 -288 4 TTGTTCTAAAATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04529 0 3.5 ATGTTAAACAACAT
Photorhabdus luminescens subsp. laumondii TTO1 plu4137 -362 4.2 TTGATTTGGATGAA
-198 3.8 ATCACATATATCAA
Proteus mirabilis HI4320 PMI2546 -202 3.7 ATGAGATAGATCAC
Position: -25
Score: 4.5
Sequence: TTGTTAAAAAACAA
Locus tag: Kvar_4723
Kvar_4723 -25 4.5 TTGTTAAAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuA
Ortholog function: C4-dicarboxylate transporter DcuA
Citrobacter koseri ATCC BAA-895 CKO_03697 -25 4.4 TTGTTAAACAACAA
Citrobacter koseri ATCC BAA-895 CKO_03697 -25 4.4 TTGTTAAACAACAA
Enterobacter sp. 638 Ent638_0325 -25 3.8 TTGTTAATAAGCAA
Enterobacter sp. 638 Ent638_0325 -25 3.8 TTGTTAATAAGCAA
Erwinia amylovora ATCC 49946 EAM_0415 -194 4 TTGATATAACACGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0620 -288 4 TTGTTCTAAAATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04528 -25 4.5 TTGTTAAAAAACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04528 -25 4.5 TTGTTAAAAAACAA
Salmonella typhimurium LT2 STM4325 -25 4.4 TTGTTAAACAACAA
Salmonella typhimurium LT2 STM4325 -25 4.4 TTGTTAAACAACAA
Position: -278
Score: 3.6
Sequence: TTAATTCATATAAA
Position: -212
Score: 3.4
Sequence: TCTACTCATATCAA
Locus tag: Kvar_4875
Kvar_4875 -278 3.6 TTAATTCATATAAA
-212 3.4 TCTACTCATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuB
Ortholog function: C4-dicarboxylate transporter DcuB
Edwardsiella tarda EIB202 ETAE_2844 -271 3.4 TTATTTTTTATTAA
Enterobacter sp. 638 Ent638_2479 -93 3.6 TTGAATTTATACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1533 -279 3.7 TTTATTTTCATGAA
-243 4.5 TAGATTTAGATCAA
Escherichia coli str. K-12 substr. MG1655 b4123 -283 4 CCGATAAATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04367 -210 3.4 TCTACTCATATCAA
Proteus mirabilis HI4320 PMI0389 -78 3.4 TTGTTTTTTTGCAA
Salmonella typhimurium LT2 STM4301 -72 3.5 TTCACAAAAATCAG
Serratia proteamaculans 568 Spro_3863 -189 3.8 CAGATTAAAATCAA
Yersinia pestis KIM y0901 -239 3.4 TTAATTTAAAGCAC
Position: -147
Score: 3.5
Sequence: GTGATACACATCAC
Locus tag: Kvar_4906
Kvar_4906 -147 3.5 GTGATACACATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ysgA
Ortholog function: Predcited carboxymethylenebutenolidase (EC 3.1.1.45)
Citrobacter koseri ATCC BAA-895 CKO_00172 -133 4.1 GTGATTTACATCAC
Erwinia amylovora ATCC 49946 EAM_0199 -199 3.6 TTAATCAAAATGAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0184 -155 3.8 GTGACTTAAATCAC
Salmonella typhimurium LT2 STM3967 -169 4.2 ATGACGTAAAACAA
Serratia proteamaculans 568 Spro_0243 -174 3.8 TTAATGCAGGTCAA
Yersinia pestis KIM y0443 -296 4.2 GTGATTTAAATCAC
Position: -123
Score: 4
Sequence: CTGACCTGAATCAA
Locus tag: Kvar_4995
Kvar_4995 -123 4 CTGACCTGAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pfkA
Ortholog function: 6-phosphofructokinase (EC 2.7.1.11)
Citrobacter koseri ATCC BAA-895 CKO_03085 -132 4 CTGACCTGAATCAA
Edwardsiella tarda EIB202 ETAE_3450 -223 4 CTGACCTGAATCAA
Enterobacter sp. 638 Ent638_4056 -174 4 CTGACCTGAATCAA
Erwinia amylovora ATCC 49946 EAM_0103 -31 4 ATTATTTGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4307 -140 4 CTGACCTGAATCAA
Escherichia coli str. K-12 substr. MG1655 b3916 -125 4 CTGACCTGAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04223 -123 4 CTGACCTGAATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4774 -203 4.1 TTGATCTCAAAAAA
Proteus mirabilis HI4320 PMI3203 -194 3.7 TTAATGCGCATCAA
Salmonella typhimurium LT2 STM4062 -126 4 CTGACCTGAATCAA
Serratia proteamaculans 568 Spro_4807 -145 4.1 GTGACTTGAATCAA
Yersinia pestis KIM y0059 -148 4.2 CTGACTTGAATCAA
Position: -158
Score: 4.2
Sequence: TTGTTCTACATCAC
Locus tag: Kvar_5001
Kvar_5001 -158 4.2 TTGTTCTACATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sodA
Ortholog function: Manganese superoxide dismutase (EC 1.15.1.1)
Enterobacter sp. 638 Ent638_4063 -132 3.6 ATGATACAAAAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0092 -143 3.5 ATGAAGTAAAGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04217 -146 4.2 TTGTTCTACATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu0075 -346 3.6 TTATGTCAAATCAA
Proteus mirabilis HI4320 PMI3036 -164 3.8 TTTATTTAAAATAA
-85 4 ATGATTTTCATTAA
Position: -122
Score: 4.1
Sequence: TTGTTTGAAATCAC
Locus tag: Kvar_5075
Kvar_5075 -122 4.1 TTGTTTGAAATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpI
Ortholog function: ATP synthase protein I
Citrobacter koseri ATCC BAA-895 CKO_00079 -122 4.2 TTGTTTGAAATCAC
Enterobacter sp. 638 Ent638_4125 -292 3.7 TTGATTAATATGAC
Erwinia amylovora ATCC 49946 EAM_3481 -124 3.9 TCGATTGAAATCAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4519 -191 3.7 ATGATTGTTAGCAA
Escherichia coli str. K-12 substr. MG1655 b3739 -123 4.2 TTGTTTGAAATCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04144 -122 4.2 TTGTTTGAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu0047 -225 3.9 ATTATTAAAAACAA
Proteus mirabilis HI4320 PMI3057 -130 4
Salmonella typhimurium LT2 STM3872 -122 4.2 TTGTTTGAAATCAC
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