Propagation of KdgR regulog to Yersinia pestis Angola
| Source regulog: | KdgR - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | IclR |
| Regulation mode: | repressor (activator) |
| Biological process: | Pectin and polygalacturonate utlization |
| Effector: | 2-keto-3-deoxygluconate |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Yersinia pestis Angola |
| Orthologous TF(s) | YpAngola_A2653 |
| Regulated genes | 16 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -149
Score: 5.5 Sequence: AAATGGAATGGCGTTTCATTT
Locus tag: YpAngola_A0844
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| YpAngola_A0844 | -149 | 5.5 | AAATGGAATGGCGTTTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pemA | ||||
| Ortholog function: Putative pectinesterase (EC 3.1.1.11) | ||||
| Yersinia pestis KIM | y3757 | -149 | 5.3 | AAATGGAATTGCGTTTCATTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3253 | -213 | 5.1 | TATTAAAATAACATTTCACTT |
|
Position: -133
Score: 5.2 Sequence: ATATGAAACGGTGTTCTGTTT
Locus tag: YpAngola_A1101
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| YpAngola_A1101 | -133 | 5.2 | ATATGAAACGGTGTTCTGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ygjV | ||||
| Ortholog function: putative transport protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3090 | -64 | 5.4 | ATAAAAAACGGCGTTTCATAA |
| Yersinia pestis KIM | y3597 | -133 | 5.2 | ATATGAAACGGTGTTCTGTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0648 | -70 | 6.2 | AAATAAAACGGCGTTTCATTT |
|
Position: -37
Score: 6.1 Sequence: AAATGAAACATTGTTTTAATT
Locus tag: YpAngola_A1449
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| YpAngola_A1449 | -37 | 6.1 | AAATGAAACATTGTTTTAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: togT | ||||
| Ortholog function: Oligogalacturonide transporter | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02398 | -46 | 5.2 | TATAAAAACAGTGTTTCAAAA |
| Yersinia pestis KIM | y2961 | -47 | 4.5 | AAAGAAAACAGTTATTCATTA |
| -25 | 6.1 | AAATGAAACATTGTTTTAATT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0817 | -60 | 4.5 | TAAAGAAATGATAGTTCAATC |
| -38 | 5.5 | AACTGAAATATTGTTTCATAT | ||
|
Position: -164
Score: 4.7 Sequence: TCATGAAACTATGCTTCATTT
Locus tag: YpAngola_A1694
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| YpAngola_A1694 | -164 | 4.7 | TCATGAAACTATGCTTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yeeO | ||||
| Ortholog function: predicted multidrug efflux system, MATE family | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1985 | -7 | 4.9 | ATTTGAAATGTGGTTTCACTT |
| Salmonella typhimurium LT2 | STM2013 | -7 | 5 | TATTGAAATGTGGTTTCAACT |
| Citrobacter koseri ATCC BAA-895 | CKO_00837 | -7 | 4.9 | ATTTGAAATGAGGTTTCAACT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02447 | -40 | 5.1 | ATTTGAAATGTTGTTTCAACA |
| Enterobacter sp. 638 | Ent638_2574 | -74 | 5 | ATTTGAAATGTAGTTTCAACT |
| Yersinia pestis KIM | y2593 | -158 | 4.8 | TCATGAAACTATGTTCCATTT |
| Serratia proteamaculans 568 | Spro_3106 | -39 | 5.2 | ATTTGAAATGTTGTTTCACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2762 | -140 | 5.1 | AATAGAAACGTCATTTTAAAA |
|
Position: -43
Score: 5.8 Sequence: TAACGAAACATCATTTCATTT
Locus tag: YpAngola_A1714
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| YpAngola_A1714 | -43 | 5.8 | TAACGAAACATCATTTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgX | ||||
| Ortholog function: predicted 2-keto-3-deoxygluconate permease | ||||
| Salmonella typhimurium LT2 | STM4395 | -34 | 5.8 | AAATAAAACATTATTTTAATT |
| Citrobacter koseri ATCC BAA-895 | CKO_03627 | -31 | 5.2 | AAATAAAACATTATTTCAAAG |
| Enterobacter sp. 638 | Ent638_0375 | -33 | 5.9 | AATTGAAACGTCATTTTATTT |
| Yersinia pestis KIM | y1734 | -22 | 5.8 | TAACGAAACATCATTTCATTT |
|
Position: -276
Score: 4.3 Sequence: ATACGGACCGTCGTTTCAGTT
Locus tag: YpAngola_A2582
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| YpAngola_A2582 | -276 | 4.3 | ATACGGACCGTCGTTTCAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pykF | ||||
| Ortholog function: Pyruvate kinase (EC 2.7.1.40) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1676 | -286 | 5 | TTTTGAAACGCTGTTTTTGTT |
| Salmonella typhimurium LT2 | STM1378 | -286 | 4.7 | TTTTGAAACAGGGTTTTCATT |
| Citrobacter koseri ATCC BAA-895 | CKO_01709 | -286 | 5 | TTTTGAAACGCTGTTTTCATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02133 | -285 | 5 | ATTTGAAACGAGGTTTTTATT |
| Enterobacter sp. 638 | Ent638_1768 | -286 | 5.1 | TTTTGAAACGCCGTTTCCATT |
| Serratia proteamaculans 568 | Spro_2187 | -203 | 4.1 | AAtaacAACAcatTTTCATcT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1867 | -259 | 5.1 | ATACGGAACGTCGTTTCAATT |
|
Position: -154
Score: 6 Sequence: AAATGAAATGATGTTTTATTA
Locus tag: YpAngola_A2641
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| YpAngola_A2641 | -154 | 6 | AAATGAAATGATGTTTTATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgF | ||||
| Ortholog function: Pectin degradation protein KdgF | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04218 | -38 | 5.6 | AGTTGAAACATTGTTTCAATA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03255 | -39 | 5.8 | AAATGAAACAATGTTTCACTT |
| Enterobacter sp. 638 | Ent638_3287 | -38 | 5.5 | AATTAAAACAATGTTTCACTA |
| Yersinia pestis KIM | y1888 | -155 | 6 | AAATGAAATGATGTTTTATTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2399 | -174 | 6.1 | AAATGAAATAATGTTTTATTT |
|
Position: -201
Score: 6 Sequence: TAATAAAACATCATTTCATTT
Locus tag: YpAngola_A2642
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| YpAngola_A2642 | -201 | 6 | TAATAAAACATCATTTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kduI | ||||
| Ortholog function: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2843 | -130 | 6.3 | AAATGAAACATTGTTTTATTT |
| -63 | 5.4 | AAACGAAACAGTGTTTCACTA | ||
| Salmonella typhimurium LT2 | STM3018 | -123 | 6.2 | AAATGAAACGTTGTTTTATTT |
| -58 | 5.3 | AATCAAAACAGTGTTTTGATT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04220 | -119 | 6.2 | AAATGAAACAACGTTTTATTT |
| -51 | 4.4 | AAACGGAACGGTGTTTCGCCT | ||
| Enterobacter sp. 638 | Ent638_3296 | -127 | 5.4 | AACTGAAACAACGTTTTAAAT |
| -60 | 5 | AATCGGAACATTGTTTCGTTA | ||
| Yersinia pestis KIM | y1887 | -201 | 6 | TAATAAAACATCATTTCATTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2400 | -209 | 6.1 | AAATAAAACATTATTTCATTT |
| Edwardsiella tarda EIB202 | ETAE_1898 | -129 | 5.6 | AATCAAAACAGCATTTCATTT |
|
Position: -76
Score: 5.2 Sequence: GATTGAAACGATGTTTCTATT
Locus tag: YpAngola_A2644
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| YpAngola_A2644 | -76 | 5.2 | GATTGAAACGATGTTTCTATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pelW | ||||
| Ortholog function: Exopolygalacturonate lyase (EC 4.2.2.9) | ||||
| Yersinia pestis KIM | y1885 | -152 | 4.5 | AATCAAAACAACGTTCCGACT |
| -76 | 5.2 | GATTGAAACGATGTTTCTATT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2402 | -139 | 4.5 | AATCAAAACAACGTTCCGACT |
| -61 | 5.3 | AATCAAAACAGTGTTTCTATT | ||
|
Position: -103
Score: 5.4 Sequence: AAATGAAACATTGCTTCTTTT
Locus tag: YpAngola_A2649
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| YpAngola_A2649 | -103 | 5.4 | AAATGAAACATTGCTTCTTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgM | ||||
| Ortholog function: Oligogalacturonate-specific porin protein KdgM | ||||
| Yersinia pestis KIM | y1880 | -103 | 5.4 | AAATGAAACATTGCTTCTTTT |
|
Position: -76
Score: 4.7 Sequence: AATAAAACCATTGTTCTATTT
Locus tag: YpAngola_A2653
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| YpAngola_A2653 | -76 | 4.7 | AATAAAACCATTGTTCTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgR | ||||
| Ortholog function: 2-keto-3-deoxy-D-gluconate repressor, IclR family | ||||
| Yersinia pestis KIM | y1876 | -76 | 4.7 | AATAAAACCATTGTTCTATTT |
|
Position: -96
Score: 5.8 Sequence: AAATGAAACATTGTTTCTATA
Locus tag: YpAngola_A2654
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| YpAngola_A2654 | -96 | 5.8 | AAATGAAACATTGTTTCTATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ogl | ||||
| Ortholog function: Oligogalacturonate lyase (EC 4.2.2.6) | ||||
| Enterobacter sp. 638 | Ent638_3293 | -226 | 5.1 | AATTAAAACGCCGTTTTACAA |
| Yersinia pestis KIM | y1875 | -96 | 5.8 | AAATGAAACATTGTTTCTATA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2426 | -180 | 5.8 | AAATGAAACATTGTTTCTATA |
|
Position: -41
Score: 5.9 Sequence: TAATAAAACAGCATTTCATTT
Locus tag: YpAngola_A4041
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| YpAngola_A4041 | -41 | 5.9 | TAATAAAACAGCATTTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yjgK | ||||
| Ortholog function: cytoplasmic protein involved in polygalacturonate utilization | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4252 | -35 | 6 | AAATGAAACGTTGTTTTAATT |
| Salmonella typhimurium LT2 | STM4468 | -32 | 5.7 | AAATAAAACGCTGTTTTAACT |
| Citrobacter koseri ATCC BAA-895 | CKO_03553 | -33 | 6.2 | AAATGAAACGTTGTTTTATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04658 | -33 | 5.8 | AAATGAAATGCTGTTTTATAT |
| Enterobacter sp. 638 | Ent638_0453 | -34 | 6 | AAATGAAACATTGTTTTATAT |
| Yersinia pestis KIM | y0739 | -41 | 5.9 | TAATAAAACAGCATTTCATTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0383 | -41 | 5.1 | TTGTAAAACAGGGTTTCATTT |
| Edwardsiella tarda EIB202 | ETAE_3112 | -39 | 5.6 | AAATAAAACGCAGTTTTATAA |
|
Position: -75
Score: 5.7 Sequence: AAATAAAATACTGTTTCATAA
Locus tag: YpAngola_A4063
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| YpAngola_A4063 | -75 | 5.7 | AAATAAAATACTGTTTCATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgM | ||||
| Ortholog function: Oligogalacturonate-specific porin protein KdgM | ||||
| Enterobacter sp. 638 | Ent638_0483 | -304 | 4.9 | TCTCAAAACATCATTTCATTT |
| Yersinia pestis KIM | y3833 | -75 | 5.7 | AAATAAAATACTGTTTCATAA |
|
Position: -225
Score: 5.1 Sequence: ATTTAAAACACCGTTTTAATC
Locus tag: YpAngola_A4070
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| YpAngola_A4070 | -225 | 5.1 | ATTTAAAACACCGTTTTAATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgK | ||||
| Ortholog function: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) | ||||
| Yersinia pestis KIM | y3838 | -225 | 5.1 | ATTTAAAACACCGTTTTAATC |
| Serratia proteamaculans 568 | Spro_4750 | -105 | 6.2 | AAATAAAACGTTGTTTTATTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4360 | -125 | 5.4 | AAATAAAACATCGTTTCAAGA |
| Edwardsiella tarda EIB202 | ETAE_3377 | -91 | 5.4 | AAACAGAACGTTGTTTTATTT |