Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of KdgR regulog to Enterobacter sp. 638

Reference regulog properties
Source regulog: KdgR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: IclR
Regulation mode: repressor (activator)
Biological process: Pectin and polygalacturonate utlization
Effector: 2-keto-3-deoxygluconate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Enterobacter sp. 638
Orthologous TF(s) Ent638_2397
Regulated genes 23
Built upon 159 sites [see more]
Predicted regulatory interactions in Enterobacter sp. 638
Locus tag Position Score Sequence
Position: -232
Score: 5.8
Sequence: AACTAAAACATTGTTTTATTT
Locus tag: Ent638_0314
Ent638_0314 -232 5.8 AACTAAAACATTGTTTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgT
Ortholog function: 2-keto-3-deoxygluconate permease
Citrobacter koseri ATCC BAA-895 CKO_03757 -231 5.7 AACTAAAACAGTGTTTTATTT
Enterobacter sp. 638 Ent638_0314 -232 5.8 AACTAAAACATTGTTTTATTT
Position: -33
Score: 5.9
Sequence: AATTGAAACGTCATTTTATTT
Locus tag: Ent638_0375
Ent638_0375 -33 5.9 AATTGAAACGTCATTTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgX
Ortholog function: predicted 2-keto-3-deoxygluconate permease
Salmonella typhimurium LT2 STM4395 -34 5.8 AAATAAAACATTATTTTAATT
Citrobacter koseri ATCC BAA-895 CKO_03627 -31 5.2 AAATAAAACATTATTTCAAAG
Enterobacter sp. 638 Ent638_0375 -33 5.9 AATTGAAACGTCATTTTATTT
Yersinia pestis KIM y1734 -22 5.8 TAACGAAACATCATTTCATTT
Position: -34
Score: 6
Sequence: AAATGAAACATTGTTTTATAT
Locus tag: Ent638_0453
Ent638_0453 -34 6 AAATGAAACATTGTTTTATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjgK
Ortholog function: cytoplasmic protein involved in polygalacturonate utilization
Escherichia coli str. K-12 substr. MG1655 b4252 -35 6 AAATGAAACGTTGTTTTAATT
Salmonella typhimurium LT2 STM4468 -32 5.7 AAATAAAACGCTGTTTTAACT
Citrobacter koseri ATCC BAA-895 CKO_03553 -33 6.2 AAATGAAACGTTGTTTTATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04658 -33 5.8 AAATGAAATGCTGTTTTATAT
Enterobacter sp. 638 Ent638_0453 -34 6 AAATGAAACATTGTTTTATAT
Yersinia pestis KIM y0739 -41 5.9 TAATAAAACAGCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0383 -41 5.1 TTGTAAAACAGGGTTTCATTT
Edwardsiella tarda EIB202 ETAE_3112 -39 5.6 AAATAAAACGCAGTTTTATAA
Position: -304
Score: 4.9
Sequence: TCTCAAAACATCATTTCATTT
Locus tag: Ent638_0483
Ent638_0483 -304 4.9 TCTCAAAACATCATTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgM
Ortholog function: Oligogalacturonate-specific porin protein KdgM
Enterobacter sp. 638 Ent638_0483 -304 4.9 TCTCAAAACATCATTTCATTT
Yersinia pestis KIM y3833 -75 5.7 AAATAAAATACTGTTTCATAA
Position: -94
Score: 5.6
Sequence: TTTTAAAACATCATTTCATTT
Locus tag: Ent638_1716
Ent638_1716 -94 5.6 TTTTAAAACATCATTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kduD2
Ortholog function: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
Citrobacter koseri ATCC BAA-895 CKO_01753 -99 5.9 TTATAAAACACTGTTTCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01240 -104 5.8 AATCAAAACATTGTTTCATTT
Enterobacter sp. 638 Ent638_1716 -94 5.6 TTTTAAAACATCATTTCATTT
Position: -107
Score: 5.3
Sequence: ATTAAAAACACCATTTCATTT
Locus tag: Ent638_1744
Ent638_1744 -107 5.3 ATTAAAAACACCATTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppsR
Ortholog function: PEP synthetase regulatory protein
Escherichia coli str. K-12 substr. MG1655 b1703 -131 5.3 AAATGAAATGCTGTTTTCATA
Salmonella typhimurium LT2 STM1348 -131 4.9 AAATGAAACACACTTTTCATT
Citrobacter koseri ATCC BAA-895 CKO_01727 -107 5.5 TATAAAAATAGCGTTTCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02161 -97 5.1 AACAAAAATAGCGTTTCAATT
Enterobacter sp. 638 Ent638_1744 -107 5.3 ATTAAAAACACCATTTCATTT
Serratia proteamaculans 568 Spro_2173 -134 5.2 ATTTGAAATAGTGTTTTACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1852 -94 5.6 TAATGAAATGGCGTTTTAATA
Position: -249
Score: 5.3
Sequence: AAATGAAATGGTGTTTTTAAT
Locus tag: Ent638_1745
Ent638_1745 -249 5.3 AAATGAAATGGTGTTTTTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppsA
Ortholog function: Phosphoenolpyruvate synthase (EC 2.7.9.2)
Escherichia coli str. K-12 substr. MG1655 b1702 -222 5.3 TATGAAAACAGCATTTCATTT
Salmonella typhimurium LT2 STM1349 -226 4.9 AATGAAAAGTGTGTTTCATTT
Citrobacter koseri ATCC BAA-895 CKO_01725 -249 5.5 AAATGAAACGCTATTTTTATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02160 -254 5.1 AATTGAAACGCTATTTTTGTT
Enterobacter sp. 638 Ent638_1745 -249 5.3 AAATGAAATGGTGTTTTTAAT
Serratia proteamaculans 568 Spro_2174 -364 5.2 AAgTaAAACAcTaTTTCAaaT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1853 -227 5.6 TATTAAAACGCCATTTCATTA
Position: -286
Score: 5.1
Sequence: TTTTGAAACGCCGTTTCCATT
Locus tag: Ent638_1768
Ent638_1768 -286 5.1 TTTTGAAACGCCGTTTCCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pykF
Ortholog function: Pyruvate kinase (EC 2.7.1.40)
Escherichia coli str. K-12 substr. MG1655 b1676 -286 5 TTTTGAAACGCTGTTTTTGTT
Salmonella typhimurium LT2 STM1378 -286 4.7 TTTTGAAACAGGGTTTTCATT
Citrobacter koseri ATCC BAA-895 CKO_01709 -286 5 TTTTGAAACGCTGTTTTCATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02133 -285 5 ATTTGAAACGAGGTTTTTATT
Enterobacter sp. 638 Ent638_1768 -286 5.1 TTTTGAAACGCCGTTTCCATT
Serratia proteamaculans 568 Spro_2187 -203 4.1 AAtaacAACAcatTTTCATcT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1867 -259 5.1 ATACGGAACGTCGTTTCAATT
Position: -189
Score: 5.6
Sequence: AAAAGAAACGCTGTTTTATAA
Locus tag: Ent638_2444
Ent638_2444 -189 5.6 AAAAGAAACGCTGTTTTATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiT
Ortholog function: Rhamnogalacturonide transporter
Citrobacter koseri ATCC BAA-895 CKO_01081 -190 5.4 AATAGAAACGCTGTTTTATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02390 -200 4.9 AAGAGAAATGCTGTTTTATAA
Enterobacter sp. 638 Ent638_2444 -189 5.6 AAAAGAAACGCTGTTTTATAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3560 -167 4.7 AGTTAAAATGCCTTTTTATAA
Position: -42
Score: 5
Sequence: GGATGAAACGCTGTTTTAAAT
Locus tag: Ent638_2477
Ent638_2477 -42 5 GGATGAAACGCTGTTTTAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tpfX
Ortholog function: ThiJ/PfpI-family hypothetical protein
Salmonella typhimurium LT2 STM1931 -231 5.4 TTATGAAACATTGTTTCAGAT
Citrobacter koseri ATCC BAA-895 CKO_01049 -199 5.4 TTTTGAAATGATGTTTCATAT
Enterobacter sp. 638 Ent638_2477 -42 5 GGATGAAACGCTGTTTTAAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0102 -85 6.1 TAATAAAACATCGTTTCATTT
Position: -74
Score: 5
Sequence: ATTTGAAATGTAGTTTCAACT
Locus tag: Ent638_2574
Ent638_2574 -74 5 ATTTGAAATGTAGTTTCAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yeeO
Ortholog function: predicted multidrug efflux system, MATE family
Escherichia coli str. K-12 substr. MG1655 b1985 -7 4.9 ATTTGAAATGTGGTTTCACTT
Salmonella typhimurium LT2 STM2013 -7 5 TATTGAAATGTGGTTTCAACT
Citrobacter koseri ATCC BAA-895 CKO_00837 -7 4.9 ATTTGAAATGAGGTTTCAACT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02447 -40 5.1 ATTTGAAATGTTGTTTCAACA
Enterobacter sp. 638 Ent638_2574 -74 5 ATTTGAAATGTAGTTTCAACT
Yersinia pestis KIM y2593 -158 4.8 TCATGAAACTATGTTCCATTT
Serratia proteamaculans 568 Spro_3106 -39 5.2 ATTTGAAATGTTGTTTCACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2762 -140 5.1 AATAGAAACGTCATTTTAAAA
Position: -109
Score: 4.9
Sequence: TTTTGAAATGCTATTTTGATT
Locus tag: Ent638_2764
Ent638_2764 -109 4.9 TTTTGAAATGCTATTTTGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: setC
Ortholog function: lactose/glucose efflux system
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02601 -102 5 TTTTGAAACGCCTTTTTAATT
Enterobacter sp. 638 Ent638_2764 -109 4.9 TTTTGAAATGCTATTTTGATT
Position: -38
Score: 5.5
Sequence: AATTAAAACAATGTTTCACTA
Locus tag: Ent638_3287
Ent638_3287 -38 5.5 AATTAAAACAATGTTTCACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgF
Ortholog function: Pectin degradation protein KdgF
Citrobacter koseri ATCC BAA-895 CKO_04218 -38 5.6 AGTTGAAACATTGTTTCAATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03255 -39 5.8 AAATGAAACAATGTTTCACTT
Enterobacter sp. 638 Ent638_3287 -38 5.5 AATTAAAACAATGTTTCACTA
Yersinia pestis KIM y1888 -155 6 AAATGAAATGATGTTTTATTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2399 -174 6.1 AAATGAAATAATGTTTTATTT
Position: -226
Score: 5.1
Sequence: AATTAAAACGCCGTTTTACAA
Locus tag: Ent638_3289
Ent638_3289 -226 5.1 AATTAAAACGCCGTTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: togM
Ortholog function: oligogalacturonide ABC transporter, inner membrane permease
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03256 -288 5 TTTTGAAACATCGTTTCGACT
-211 5.6 AATTAAAACGGTGTTTTATAA
Enterobacter sp. 638 Ent638_3289 -226 5.1 AATTAAAACGCCGTTTTACAA
Yersinia pestis KIM y1884 -152 4.5 AATCAAAACAACGTTCCGACT
-76 5.2 GATTGAAACGATGTTTCTATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2403 -139 4.5 AATCAAAACAACGTTCCGACT
-61 5.3 AATCAAAACAGTGTTTCTATT
Position: -127
Score: 5.4
Sequence: AACTGAAACAACGTTTTAAAT
Locus tag: Ent638_3296
Ent638_3296 -127 5.4 AACTGAAACAACGTTTTAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kduI
Ortholog function: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Escherichia coli str. K-12 substr. MG1655 b2843 -130 6.3 AAATGAAACATTGTTTTATTT
-63 5.4 AAACGAAACAGTGTTTCACTA
Salmonella typhimurium LT2 STM3018 -123 6.2 AAATGAAACGTTGTTTTATTT
-58 5.3 AATCAAAACAGTGTTTTGATT
Citrobacter koseri ATCC BAA-895 CKO_04220 -119 6.2 AAATGAAACAACGTTTTATTT
-51 4.4 AAACGGAACGGTGTTTCGCCT
Enterobacter sp. 638 Ent638_3296 -127 5.4 AACTGAAACAACGTTTTAAAT
-60 5 AATCGGAACATTGTTTCGTTA
Yersinia pestis KIM y1887 -201 6 TAATAAAACATCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2400 -209 6.1 AAATAAAACATTATTTCATTT
Edwardsiella tarda EIB202 ETAE_1898 -129 5.6 AATCAAAACAGCATTTCATTT
Position: -350
Score: 5.4
Sequence: ATTTAAAACGTTGTTTCAGTT
Position: -105
Score: 5
Sequence: CATTGAAACGTCGTTTTGATA
Locus tag: Ent638_3297
Ent638_3297 -350 5.4 ATTTAAAACGTTGTTTCAGTT
-105 5 CATTGAAACGTCGTTTTGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ogl
Ortholog function: Oligogalacturonate lyase (EC 4.2.2.6)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03266 -299 5.8 ATTTAAAACGATGTTTCATTT
-103 5.6 TAATGAAACAATGTTTTGATA
Enterobacter sp. 638 Ent638_3297 -105 5 CATTGAAACGTCGTTTTGATA
Position: -33
Score: 5.4
Sequence: AAACGAAATGACATTTTAATT
Locus tag: Ent638_3298
Ent638_3298 -33 5.4 AAACGAAATGACATTTTAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgM
Ortholog function: Oligogalacturonate-specific porin protein KdgM
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03267 -58 5.8 AAATAAAATGATGTTTCATAA
-37 5.6 AAACGAAATGTCATTTTATTT
Enterobacter sp. 638 Ent638_3298 -54 4.9 AAATAAAATGCAGTTCCATAA
-33 5.4 AAACGAAATGACATTTTAATT
Position: -49
Score: 4.8
Sequence: AACTAAAACAACGTTTTAACG
Locus tag: Ent638_3876
Ent638_3876 -49 4.8 AACTAAAACAACGTTTTAACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiA
Ortholog function: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit
Citrobacter koseri ATCC BAA-895 CKO_04899 -138 5.1 TTTTAAACCATCGTTTCAATT
-50 4.8 AACTAAAACAATGTTTTAACG
Enterobacter sp. 638 Ent638_3876 -134 4.5 TTTCAAACCATCGTTTCAAAA
-49 4.8 AACTAAAACAACGTTTTAACG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0357 -239 5.6 ATATAAAACAGCATTTCATAT
Position: -84
Score: 5.1
Sequence: TTATGGAACGACGTTTTAATA
Locus tag: Ent638_3923
Ent638_3923 -84 5.1 TTATGGAACGACGTTTTAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgK
Ortholog function: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Enterobacter sp. 638 Ent638_3923 -84 5.1 TTATGGAACGACGTTTTAATA
Position: -60
Score: 5.7
Sequence: AAAAGAAACGACGTTTCATCT
Locus tag: Ent638_4134
Ent638_4134 -60 5.7 AAAAGAAACGACGTTTCATCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pelX
Ortholog function: Pectate disaccharide-lyase
Enterobacter sp. 638 Ent638_4134 -102 5.2 AAGCAAAACAACGTTTTAATT
-60 5.7 AAAAGAAACGACGTTTCATCT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4510 -130 5.3 AAATGACACGGTGTTTCATAA
-113 4.2 ATAAAAAACAGACTTTATTTT
-66 6 AAAAGAAACAGCGTTTCATTT
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