Propagation of KdgR regulog to Salmonella enterica subsp. enterica serovar Typhi str. M223
| Source regulog: | KdgR - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | IclR |
| Regulation mode: | repressor (activator) |
| Biological process: | Pectin and polygalacturonate utlization |
| Effector: | 2-keto-3-deoxygluconate |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Salmonella enterica subsp. enterica serovar Typhi str. M223 |
| Orthologous TF(s) | SentesT_010100026081 |
| Regulated genes | 10 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -123
Score: 6.2 Sequence: AAATGAAACGTTGTTTTATTT
Locus tag: SentesT_010100003917
|
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| SentesT_010100003917 | -123 | 6.2 | AAATGAAACGTTGTTTTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kduI | ||||
| Ortholog function: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2843 | -130 | 6.3 | AAATGAAACATTGTTTTATTT |
| -63 | 5.4 | AAACGAAACAGTGTTTCACTA | ||
| Salmonella typhimurium LT2 | STM3018 | -123 | 6.2 | AAATGAAACGTTGTTTTATTT |
| -58 | 5.3 | AATCAAAACAGTGTTTTGATT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04220 | -119 | 6.2 | AAATGAAACAACGTTTTATTT |
| -51 | 4.4 | AAACGGAACGGTGTTTCGCCT | ||
| Enterobacter sp. 638 | Ent638_3296 | -127 | 5.4 | AACTGAAACAACGTTTTAAAT |
| -60 | 5 | AATCGGAACATTGTTTCGTTA | ||
| Yersinia pestis KIM | y1887 | -201 | 6 | TAATAAAACATCATTTCATTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2400 | -209 | 6.1 | AAATAAAACATTATTTCATTT |
| Edwardsiella tarda EIB202 | ETAE_1898 | -129 | 5.6 | AATCAAAACAGCATTTCATTT |
|
Position: -231
Score: 5.4 Sequence: TTATGAAACATTGTTTCAGAT
Locus tag: SentesT_010100009951
|
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| SentesT_010100009951 | -231 | 5.4 | TTATGAAACATTGTTTCAGAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tpfX | ||||
| Ortholog function: ThiJ/PfpI-family hypothetical protein | ||||
| Salmonella typhimurium LT2 | STM1931 | -231 | 5.4 | TTATGAAACATTGTTTCAGAT |
| Citrobacter koseri ATCC BAA-895 | CKO_01049 | -199 | 5.4 | TTTTGAAATGATGTTTCATAT |
| Enterobacter sp. 638 | Ent638_2477 | -42 | 5 | GGATGAAACGCTGTTTTAAAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0102 | -85 | 6.1 | TAATAAAACATCGTTTCATTT |
|
Position: -32
Score: 5.7 Sequence: AAATAAAACGCTGTTTTAACT
Locus tag: SentesT_010100012620
|
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| SentesT_010100012620 | -32 | 5.7 | AAATAAAACGCTGTTTTAACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yjgK | ||||
| Ortholog function: cytoplasmic protein involved in polygalacturonate utilization | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4252 | -35 | 6 | AAATGAAACGTTGTTTTAATT |
| Salmonella typhimurium LT2 | STM4468 | -32 | 5.7 | AAATAAAACGCTGTTTTAACT |
| Citrobacter koseri ATCC BAA-895 | CKO_03553 | -33 | 6.2 | AAATGAAACGTTGTTTTATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04658 | -33 | 5.8 | AAATGAAATGCTGTTTTATAT |
| Enterobacter sp. 638 | Ent638_0453 | -34 | 6 | AAATGAAACATTGTTTTATAT |
| Yersinia pestis KIM | y0739 | -41 | 5.9 | TAATAAAACAGCATTTCATTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0383 | -41 | 5.1 | TTGTAAAACAGGGTTTCATTT |
| Edwardsiella tarda EIB202 | ETAE_3112 | -39 | 5.6 | AAATAAAACGCAGTTTTATAA |
|
Position: -120
Score: 5.1 Sequence: AACAGAAACAATGTTTCATTC
Locus tag: SentesT_010100015137
|
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| SentesT_010100015137 | -120 | 5.1 | AACAGAAACAATGTTTCATTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yjcB | ||||
| Ortholog function: putative inner membrane protein | ||||
| Salmonella typhimurium LT2 | STM4263 | -120 | 5.4 | AATAGAAACAATGTTTCATTC |
| Citrobacter koseri ATCC BAA-895 | CKO_03830 | -121 | 5.1 | AACAGAAACGTTGTTTCATTC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04460 | -113 | 4.9 | AACAGAAATGGCGTTTCATCA |
|
Position: -286
Score: 4.7 Sequence: TTTTGAAACAGGGTTTTCATT
Locus tag: SentesT_010100020104
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| SentesT_010100020104 | -286 | 4.7 | TTTTGAAACAGGGTTTTCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pykF | ||||
| Ortholog function: Pyruvate kinase (EC 2.7.1.40) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1676 | -286 | 5 | TTTTGAAACGCTGTTTTTGTT |
| Salmonella typhimurium LT2 | STM1378 | -286 | 4.7 | TTTTGAAACAGGGTTTTCATT |
| Citrobacter koseri ATCC BAA-895 | CKO_01709 | -286 | 5 | TTTTGAAACGCTGTTTTCATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02133 | -285 | 5 | ATTTGAAACGAGGTTTTTATT |
| Enterobacter sp. 638 | Ent638_1768 | -286 | 5.1 | TTTTGAAACGCCGTTTCCATT |
| Serratia proteamaculans 568 | Spro_2187 | -203 | 4.1 | AAtaacAACAcatTTTCATcT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1867 | -259 | 5.1 | ATACGGAACGTCGTTTCAATT |
|
Position: -85
Score: 4.9 Sequence: TAATGGACCGATGTTTTAATA
Locus tag: SentesT_010100020721
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| SentesT_010100020721 | -85 | 4.9 | TAATGGACCGATGTTTTAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgK | ||||
| Ortholog function: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) | ||||
| Salmonella typhimurium LT2 | STM3612 | -85 | 4.9 | TAATGGACCGATGTTTTAATA |
| Citrobacter koseri ATCC BAA-895 | CKO_04968 | -87 | 5.3 | TAATGGAACGATGTTTTAATA |
|
Position: -34
Score: 5.8 Sequence: AAATAAAACATTATTTTAATT
Locus tag: SentesT_010100034300
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| SentesT_010100034300 | -34 | 5.8 | AAATAAAACATTATTTTAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgX | ||||
| Ortholog function: predicted 2-keto-3-deoxygluconate permease | ||||
| Salmonella typhimurium LT2 | STM4395 | -34 | 5.8 | AAATAAAACATTATTTTAATT |
| Citrobacter koseri ATCC BAA-895 | CKO_03627 | -31 | 5.2 | AAATAAAACATTATTTCAAAG |
| Enterobacter sp. 638 | Ent638_0375 | -33 | 5.9 | AATTGAAACGTCATTTTATTT |
| Yersinia pestis KIM | y1734 | -22 | 5.8 | TAACGAAACATCATTTCATTT |