Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fnr regulog to Serratia proteamaculans 568

Reference regulog properties
Source regulog: Fnr - Enterobacteriales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Energy metabolism; Anaerobic metabolism
Effector: Oxygen
Phylum: Gammaproteobacteria
Propagated regulon:
Target genome Serratia proteamaculans 568
Orthologous TF(s) Spro_2582
Regulated genes 66
Built upon 685 sites [see more]
Predicted regulatory interactions in Serratia proteamaculans 568
Locus tag Position Score Sequence
Position: -305
Score: 4.3
Sequence: TTGATAAGGAACAA
Position: -105
Score: 3.6
Sequence: TCGTTATGGAACAA
Locus tag: Spro_0199
Spro_0199 -305 4.3 TTGATAAGGAACAA
-105 3.6 TCGTTATGGAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpT
Ortholog function: Glycerol-3-phosphate transporter
Citrobacter koseri ATCC BAA-895 CKO_00537 -257 3.7 TCGTTTTTTATCAT
Edwardsiella tarda EIB202 ETAE_3116 -301 3.8 GTGATCAAAATCAC
Enterobacter sp. 638 Ent638_2804 -197 4.2 TTGATTTCGAACAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4166 -249 4.3 TTGATAAAGAGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02646 -214 3.8 TTGATTTCGAGCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu4119 -306 4.2 TTGATAAAGAACAG
Proteus mirabilis HI4320 PMI3591 -287 4 TTGATAATGAGCAA
-45 4.9 TTGTTTAATATCAA
Salmonella typhimurium LT2 STM2283 -256 3.7 TCGTTTTTTATCAT
Serratia proteamaculans 568 Spro_0199 -305 4.3 TTGATAAGGAACAA
Position: -274
Score: 3.6
Sequence: TTGTTCCATAACGA
Position: -74
Score: 4.3
Sequence: TTGTTCCTTATCAA
Locus tag: Spro_0200
Spro_0200 -274 3.6 TTGTTCCATAACGA
-74 4.3 TTGTTCCTTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpA
Ortholog function: Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00536 -30 3.8 ATGATAAAAAACGA
Edwardsiella tarda EIB202 ETAE_3115 -78 4.1 TTGCTCCTTATCAA
Enterobacter sp. 638 Ent638_2805 -69 4.3 ATGTTCGAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4165 -84 4.5 TTGCTCTTTATCAA
Escherichia coli str. K-12 substr. MG1655 b2241 -71 3.6 ATGCGCGAAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02647 -71 4.1 ATGCTCGAAATCAA
Proteus mirabilis HI4320 PMI3592 -107 4.2 TTGCTCATTATCAA
Salmonella typhimurium LT2 STM2284 -30 3.8 ATGATAAAAAACGA
Serratia proteamaculans 568 Spro_0200 -74 4.3 TTGTTCCTTATCAA
Yersinia pestis KIM y0404 -145 4.3 TTGATCACAATCAT
-91 4.4 TTGTTTCTTATCAA
Position: -174
Score: 3.7
Sequence: TTAATGCAGGTCAA
Locus tag: Spro_0243
Spro_0243 -174 3.7 TTAATGCAGGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ysgA
Ortholog function: Predcited carboxymethylenebutenolidase (EC 3.1.1.45)
Citrobacter koseri ATCC BAA-895 CKO_00172 -133 4.1 GTGATTTACATCAC
Erwinia amylovora ATCC 49946 EAM_0199 -199 3.6 TTAATCAAAATGAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0184 -155 3.8 GTGACTTAAATCAC
Salmonella typhimurium LT2 STM3967 -169 4.2 ATGACGTAAAACAA
Serratia proteamaculans 568 Spro_0243 -174 3.8 TTAATGCAGGTCAA
Yersinia pestis KIM y0443 -296 4.2 GTGATTTAAATCAC
Position: -63
Score: 3.7
Sequence: TTTATAAATATTAA
Locus tag: Spro_0419
Spro_0419 -63 3.7 TTTATAAATATTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: frdA
Ortholog function: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Citrobacter koseri ATCC BAA-895 CKO_03678 -151 4 TTAATCAGAATCAA
Enterobacter sp. 638 Ent638_0343 -31 3.6 TTGCGGAATAACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4124 -239 4.1
Proteus mirabilis HI4320 PMI3588 -208 4
Salmonella typhimurium LT2 STM4343 -191 4.4 TTAATCAAAATCAA
Serratia proteamaculans 568 Spro_0419 -63 3.7 TTTATAAATATTAA
Position: -217
Score: 4.6
Sequence: TTGTTCTACGTCAA
Locus tag: Spro_0525
Spro_0525 -217 4.6 TTGTTCTACGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdD
Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Citrobacter koseri ATCC BAA-895 CKO_03580 -235 4.2 TTGATGCAAATCAC
Edwardsiella tarda EIB202 ETAE_0423 -196 4.7 TTGATTCAGGTCAA
Enterobacter sp. 638 Ent638_0437 -244 4.7 TTGTTCTGAATCAA
-213 4.2 TTGATGCAAATCAC
Erwinia amylovora ATCC 49946 EAM_3059 -106 4.2 TTGCTTCAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0375 -182 4.8 TTGCTCTACATCAA
Escherichia coli str. K-12 substr. MG1655 b4238 -249 4.8 TTGAGCTACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04646 -248 4.2 TTGTTCTGGGTCAA
-217 4.2 TTGATGCAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu4499 -160 4.7 TTGTTTCAGATCAA
Proteus mirabilis HI4320 PMI3451 -184 4.9 TTGATTTAGATCAG
Salmonella typhimurium LT2 STM4452 -249 5 TTGTTCTACATCAA
-218 4.2 TTGATGCAAATCAC
Serratia proteamaculans 568 Spro_0525 -217 4.7 TTGTTCTACGTCAA
Yersinia pestis KIM y0733 -192 4.6 TTGTTCTAGGTCAA
Position: -299
Score: 5
Sequence: TTGATATATGTCAA
Locus tag: Spro_0681
Spro_0681 -299 5 TTGATATATGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcA
Ortholog function: Aerobic respiration control protein arcA
Citrobacter koseri ATCC BAA-895 CKO_03387 -291 5.1 TTGATATATGTCAA
Edwardsiella tarda EIB202 ETAE_0561 -300 5.1 TTGATATATGTCAA
Enterobacter sp. 638 Ent638_0562 -291 5.1 TTGATATATGTCAA
Erwinia amylovora ATCC 49946 EAM_0640 -399 4.5 TTGATGCAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3893 -339 5.1 TTGATATATGTCAA
Escherichia coli str. K-12 substr. MG1655 b4401 -291 5.1 TTGATATATGTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04856 -291 5.1 TTGATATATGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0562 -282 4.9 TTGATGTACGTCAA
Proteus mirabilis HI4320 PMI3719 -343 4 ATTACATAAATCAA
-282 4.6 TTGATATGTGTCAA
Salmonella typhimurium LT2 STM4598 -291 5.1 TTGATATATGTCAA
Serratia proteamaculans 568 Spro_0681 -299 5.1 TTGATATATGTCAA
Yersinia pestis KIM y3721 -298 5.1 TTGATATATGTCAA
Position: 0
Score: 4.3
Sequence: ATGATTAAAATCAG
Locus tag: Spro_0953
Spro_0953 0 4.3 ATGATTAAAATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nqrA
Ortholog function: Na-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00239 0 4.2 ATGATTAAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu1196 -205 4.1 TTGAACTAAATCAC
Proteus mirabilis HI4320 PMI0352 -205 4.2 TTGAGCTAAATCAC
Serratia proteamaculans 568 Spro_0953 0 4.3 ATGATTAAAATCAG
Yersinia pestis KIM y0951 18 4.2 ATGATTAAAATAAA
Position: -293
Score: 3.6
Sequence: TTCTTTTACATTAA
Locus tag: Spro_1090
Spro_1090 -293 3.6 TTCTTTTACATTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoA
Ortholog function: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
Photorhabdus luminescens subsp. laumondii TTO1 plu3875 -336 3.8 TTGTGAGCTATCAA
Proteus mirabilis HI4320 PMI0108 9 3.6 ATGAAATACATAAA
Serratia proteamaculans 568 Spro_1090 -293 3.6 TTCTTTTACATTAA
Yersinia pestis KIM y1021 -223 3.5 TTGTTTTTCCTTAA
Position: -6
Score: 3.7
Sequence: TTGATAATGAAAAA
Locus tag: Spro_1110
Spro_1110 -6 3.7 TTGATAATGAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amtB
Ortholog function: Ammonium transporter
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00414 -59 4
Proteus mirabilis HI4320 PMI0127 0 3.8 ATGAAATATATCAT
Position: -249
Score: 4
Sequence: GTGATCTAAATCAC
Locus tag: Spro_1263
Spro_1263 -249 4 GTGATCTAAATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Citrobacter koseri ATCC BAA-895 CKO_02438 25 3.6 ATGTGAAAAAACAA
Edwardsiella tarda EIB202 ETAE_2588 10 4
Escherichia coli str. K-12 substr. MG1655 b0721 10 3.6 ATGTGAAAAAACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00728 -104 3.6 ATGTGAAAAAACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1426 -127 4 TTGTGAAAAAACAA
Proteus mirabilis HI4320 PMI0565 -2 4 TTGTGAAAAAACAA
Salmonella typhimurium LT2 STM0732 10 3.6 ATGTGAAAAAACAA
Serratia proteamaculans 568 Spro_1263 -249 4.1 GTGATCTAAATCAC
Yersinia pestis KIM y3071 -224 3.8 ATGTTATCAATCAG
Position: -3
Score: 3.9
Sequence: TTGATGAAACTCGA
Locus tag: Spro_1266
Spro_1266 -3 3.9 TTGATGAAACTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhB
Ortholog function: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Citrobacter koseri ATCC BAA-895 CKO_02435 25 3.6 ATGTGAAAAAACAA
Edwardsiella tarda EIB202 ETAE_2585 10 4
Escherichia coli str. K-12 substr. MG1655 b0724 10 3.6 ATGTGAAAAAACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00731 -104 3.6 ATGTGAAAAAACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1429 -127 4 TTGTGAAAAAACAA
Proteus mirabilis HI4320 PMI0568 -2 4 TTGTGAAAAAACAA
Salmonella typhimurium LT2 STM0735 10 3.6 ATGTGAAAAAACAA
Serratia proteamaculans 568 Spro_1266 -249 4.1 GTGATCTAAATCAC
Yersinia pestis KIM y3068 -224 3.8 ATGTTATCAATCAG
Position: -312
Score: 3.7
Sequence: GTGATTCCGGTCAA
Locus tag: Spro_1320
Spro_1320 -312 3.7 GTGATTCCGGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaA
Ortholog function: Molybdenum cofactor biosynthesis protein MoaA
Citrobacter koseri ATCC BAA-895 CKO_02345 -253 4.7 CTGATGTATATCAA
Edwardsiella tarda EIB202 ETAE_2347 -380 3.9 GTGACATGTATCAA
Enterobacter sp. 638 Ent638_1273 -236 4.4 ATGACGTATATCAA
Erwinia amylovora ATCC 49946 EAM_1218 -212 4.2 TCGCTATATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2817 -321 3.5 ATGACCTGAGACAA
Escherichia coli str. K-12 substr. MG1655 b0781 -263 4.9 ATGATGTATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00810 -257 4 CTGACCGACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1499 -155 3.7 TCGTTTTACATTAA
Salmonella typhimurium LT2 STM0802 -264 5 ATGATATATATCAA
Serratia proteamaculans 568 Spro_1320 -312 3.7 GTGATTCCGGTCAA
Yersinia pestis KIM y3023 -310 4.3 GTGATTTTAAACAA
Position: -107
Score: 3.9
Sequence: TTGACGGATATCAT
Locus tag: Spro_1579
Spro_1579 -107 3.9 TTGACGGATATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuC
Ortholog function: C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1)
Citrobacter koseri ATCC BAA-895 CKO_02537 -106 4.7 TTGATTTTAATCAG
Edwardsiella tarda EIB202 ETAE_1192 -147 4.1 TTGACCAATATCAG
Enterobacter sp. 638 Ent638_1152 -102 4.4 TTGATTTTAGTCAT
Escherichia coli str. K-12 substr. MG1655 b0621 -103 4.7 TTGATTTTAATCAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00654 -104 4.5 TTGATTTGCATCAG
Proteus mirabilis HI4320 PMI0652 -127 4.5 TTGATATATGTCAT
Salmonella typhimurium LT2 STM0627 -138 3.6 TTCATCTTTAGCAA
-101 4.1 GTGATTTTAATCAG
Serratia proteamaculans 568 Spro_1579 -107 4 TTGACGGATATCAT
Position: -66
Score: 4.4
Sequence: TTGCGCTAAATCAA
Locus tag: Spro_1666
Spro_1666 -66 4.4 TTGCGCTAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Edwardsiella tarda EIB202 ETAE_2215 -113 4.4 TTGCGTTATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2662 -114 4.4 TTGCGCTAAATCAA
Proteus mirabilis HI4320 PMI2112 -131 4.4 TTGCGTTAGATCAA
Serratia proteamaculans 568 Spro_1666 -66 4.4 TTGCGCTAAATCAA
Yersinia pestis KIM y2819 -115 4.1 TTGCGTCAAATCAA
Position: -164
Score: 4.1
Sequence: TTGATAGCAGACAA
Position: -40
Score: 4.1
Sequence: ATGACGTTTATCAA
Locus tag: Spro_1687
Spro_1687 -164 4.1 TTGATAGCAGACAA
-40 4.1 ATGACGTTTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ynfE
Ortholog function: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
Citrobacter koseri ATCC BAA-895 CKO_01581 -114 3.7 TTGACATGGATTAA
Escherichia coli str. K-12 substr. MG1655 b1587 -113 4.1 TTGATATGGATTAA
Salmonella typhimurium LT2 STM1499 -116 3.7 TTGACATGGATTAA
Serratia proteamaculans 568 Spro_1687 -164 4.2 TTGATAGCAGACAA
-40 4.2 ATGACGTTTATCAA
Position: -81
Score: 4.6
Sequence: ATGATCCAAATCAA
Locus tag: Spro_1703
Spro_1703 -81 4.6 ATGATCCAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: focA
Ortholog function: Formate efflux transporter (TC 2.A.44 family)
Citrobacter koseri ATCC BAA-895 CKO_02167 -116 4.9 ATGATCTATATCAA
Edwardsiella tarda EIB202 ETAE_2181 -117 4.2 ATGATCCATGTCAA
Enterobacter sp. 638 Ent638_1424 -74 4.9 ATGATCTATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2596 -228 4 ATGATTTTTATTAA
-75 4.5 ATGATCCACATCAA
Escherichia coli str. K-12 substr. MG1655 b0904 -74 4.9 ATGATCTATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00932 -117 4.9 ATGATCTATATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1614 -267 4.1 TTTATTTGCAACAA
-159 4.7 TTTATTAAAATCAA
-84 4.9 ATGATCTATATCAA
Proteus mirabilis HI4320 PMI0706 -159 4.1 TTATTATTAATCAA
-85 4.5 ATGATCCATATCAA
Salmonella typhimurium LT2 STM0974 -74 4.9 ATGATCTATATCAA
Serratia proteamaculans 568 Spro_1703 -143 3.9 ATAATTTAACTCAA
-81 4.6 ATGATCCAAATCAA
Yersinia pestis KIM y2789 -80 4.5 ATGATCCATATCAA
Position: -256
Score: 4.5
Sequence: TTGATTAAAAGCAA
Locus tag: Spro_1739
Spro_1739 -256 4.5 TTGATTAAAAGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ssuE
Ortholog function: FMN reductase (EC 1.5.1.29)
Citrobacter koseri ATCC BAA-895 CKO_02124 -43 3.7 TTAATGAAAATCGA
Enterobacter sp. 638 Ent638_1456 -181 3.5 TTGACCTGAGGCAA
Escherichia coli str. K-12 substr. MG1655 b0937 -278 3.6 GCCATTTAAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00973 -182 3.8 TTGACCTGCGACAA
Serratia proteamaculans 568 Spro_1739 -256 4.6 TTGATTAAAAGCAA
Yersinia pestis KIM y0246 -252 3.7 GTGATCTGGCTCAA
Position: -149
Score: 5.2
Sequence: TTGATGTACATCAA
Locus tag: Spro_1926
Spro_1926 -149 5.2 TTGATGTACATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase (EC 1.6.99.3)
Citrobacter koseri ATCC BAA-895 CKO_01946 -163 5.2 TTGATGTACATCAA
Edwardsiella tarda EIB202 ETAE_2070 -162 5.1 TTGATTTGAATCAA
Enterobacter sp. 638 Ent638_1624 -149 5.1 TTGATTCATATCAA
Erwinia amylovora ATCC 49946 EAM_1473 -146 4.2 TTGACCAGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1815 -149 5.4 TTGATATATATCAA
Escherichia coli str. K-12 substr. MG1655 b1109 -150 5.2 TTGATTAACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01106 -148 4.8 TTGATGCACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2821 -150 4.2 TTGATGTTGTTCAA
Proteus mirabilis HI4320 PMI0875 -153 5.5 TTGATATAAATCAA
Salmonella typhimurium LT2 STM1211 -150 4.8 TTGATGCACATCAA
Serratia proteamaculans 568 Spro_1926 -149 5.2 TTGATGTACATCAA
Yersinia pestis KIM y1777 -148 5.4 TTGATATATATCAA
Position: 12
Score: 3.6
Sequence: TTGATTATCGACGA
Locus tag: Spro_1958
Spro_1958 12 3.6 TTGATTATCGACGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuR
Ortholog function: Fumarate respiration transcriptional regulator DcuR
Serratia proteamaculans 568 Spro_1958 -188 3.3 TTAATGGCTATCAT
Position: -89
Score: 4.6
Sequence: TTGATTATCGTCAA
Locus tag: Spro_1968
Spro_1968 -89 4.6 TTGATTATCGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhjA
Ortholog function: Cytochrome c551 peroxidase (EC 1.11.1.5)
Citrobacter koseri ATCC BAA-895 CKO_04957 -73 4.7 TTGATACTTATCAA
Edwardsiella tarda EIB202 ETAE_1715 -117 4.3 TTGACACTTATCAA
Escherichia coli str. K-12 substr. MG1655 b3518 -121 4.7 TTGATTCCTATCAA
Salmonella typhimurium LT2 STM3820 -110 4.7 TTGATACCAATCAA
Salmonella typhimurium LT2 STM3820 -110 4.7 TTGATACCAATCAA
Serratia proteamaculans 568 Spro_1968 -89 4.6 TTGATTATCGTCAA
Yersinia pestis KIM y0848 -152 4.7 TTGATAAAGGTCAA
Position: -121
Score: 3.4
Sequence: ATGAAGGAAATCAT
Position: -96
Score: 3.6
Sequence: ATGATTTCCGTTAA
Position: -53
Score: 3.4
Sequence: TTGATCCTGATCGG
Locus tag: Spro_2009
Spro_2009 -121 3.4 ATGAAGGAAATCAT
-96 3.6 ATGATTTCCGTTAA
-53 3.4 TTGATCCTGATCGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepT
Ortholog function: Tripeptide aminopeptidase (EC 3.4.11.4)
Citrobacter koseri ATCC BAA-895 CKO_01926 -42 3.3 TTGCTTATTAATAA
Escherichia coli str. K-12 substr. MG1655 b1127 -121 3.7 TTTATATTCATTAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01133 -347 3.5 TTGTTGATGGTCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu2810 -156 3.8 TTGATGAAAAGCAT
Proteus mirabilis HI4320 PMI0882 -92 3.7 TTGATTTAATTAAT
Salmonella typhimurium LT2 STM1227 -375 4.1 TTGTTAATGGTCAA
Serratia proteamaculans 568 Spro_2009 -96 3.6 ATGATTTCCGTTAA
Yersinia pestis KIM y1791 -23 4 TTGATCATGATCAC
Position: -159
Score: 3.6
Sequence: GTGATTTCTAACAG
Position: -3
Score: 4.2
Sequence: TTGATGGAAAGCAA
Locus tag: Spro_2025
Spro_2025 -159 3.6 GTGATTTCTAACAG
-3 4.2 TTGATGGAAAGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: icdA
Ortholog function: Isocitrate dehydrogenase (EC 1.1.1.42)
Edwardsiella tarda EIB202 ETAE_2050 -73 3.9 TTTTATTAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2439 -158 3.7 GTGATTTTTAACAG
Escherichia coli str. K-12 substr. MG1655 b1136 -89 3.6 TTGCTCTAAAGCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu2801 -249 4.8 TTGTTAAATATCAA
Serratia proteamaculans 568 Spro_2025 -3 4.3 TTGATGGAAAGCAA
Yersinia pestis KIM y1802 -106 3.7 GTGATTTTTAACAG
Position: -119
Score: 4.3
Sequence: TTAATTATAATCAA
Locus tag: Spro_2048
Spro_2048 -119 4.3 TTAATTATAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: icdA
Ortholog function: Isocitrate dehydrogenase (EC 1.1.1.42)
Edwardsiella tarda EIB202 ETAE_2050 -73 3.9 TTTTATTAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2439 -158 3.7 GTGATTTTTAACAG
Escherichia coli str. K-12 substr. MG1655 b1136 -89 3.6 TTGCTCTAAAGCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu2801 -249 4.8 TTGTTAAATATCAA
Serratia proteamaculans 568 Spro_2025 -3 4.3 TTGATGGAAAGCAA
Yersinia pestis KIM y1802 -106 3.7 GTGATTTTTAACAG
Position: -175
Score: 3.2
Sequence: ATTTTATAAATCTA
Position: -83
Score: 3.2
Sequence: ATTATATTGAGCAA
Position: 31
Score: 3.7
Sequence: TTGTTCAGCATCAT
Locus tag: Spro_2068
Spro_2068 -175 3.2 ATTTTATAAATCTA
-83 3.2 ATTATATTGAGCAA
31 3.7 TTGTTCAGCATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: puuA
Ortholog function: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11)
Escherichia coli str. K-12 substr. MG1655 b1297 -101 3.3 TTAACATTTGACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01021 -103 3.3 TTAACATTTGACAA
Serratia proteamaculans 568 Spro_2068 31 3.7 TTGTTCAGCATCAT
Position: -34
Score: 4.4
Sequence: TTGACGCATATCAA
Locus tag: Spro_2582
Spro_2582 -34 4.4 TTGACGCATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fnr
Ortholog function: Fumarate and nitrate reduction regulatory protein
Citrobacter koseri ATCC BAA-895 CKO_01409 -83 3.8 TTGATGTAAAGTAA
Edwardsiella tarda EIB202 ETAE_1744 -133 3.4 GTGCTATACATCAC
-33 4.6 TTGACCGATATCAA
Enterobacter sp. 638 Ent638_1853 -33 4.6 TTGACCAATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2207 -34 4.6 TTGACCAATATCAA
Escherichia coli str. K-12 substr. MG1655 b1334 -33 4.7 TTGACAAATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01530 -327 4.6 TTGACCAATATCAA
-185 3.5 ATGAGCTTGATCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu2179 -35 3.4 TTGAAGGATATGAA
Proteus mirabilis HI4320 PMI1203 -40 4.5 TTGACACATATCAA
Salmonella typhimurium LT2 STM1660.S -33 4.7 TTGACAAATATCAA
Serratia proteamaculans 568 Spro_2582 -34 4.4 TTGACGCATATCAA
Yersinia pestis KIM y2132 -32 4.4 TTGACGCATATCAA
Position: -76
Score: 5
Sequence: TTGATCGAAATCAA
Locus tag: Spro_2641
Spro_2641 -76 5 TTGATCGAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybiY
Ortholog function: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Citrobacter koseri ATCC BAA-895 CKO_02286 -70 4.1 TTGACCTGCGTCAA
Edwardsiella tarda EIB202 ETAE_0451 -71 5.2 TTGATCAAAATCAA
Enterobacter sp. 638 Ent638_1318 -68 4.4 TTGACGCACATCAA
Escherichia coli str. K-12 substr. MG1655 b0824 -67 4.4 TTGACGCACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00858 -69 4.7 TTGATTTGCGTCAA
Salmonella typhimurium LT2 STM0844 -69 4.4 TTGACGCACATCAA
Serratia proteamaculans 568 Spro_2641 -76 5.1 TTGATCGAAATCAA
Position: -131
Score: 5
Sequence: TTGATTCAGATCAA
Locus tag: Spro_2674
Spro_2674 -131 5 TTGATTCAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W; colicin S4 receptor; putative transporter
Citrobacter koseri ATCC BAA-895 CKO_01333 -117 4.1 TTAATCTGGATCAA
Edwardsiella tarda EIB202 ETAE_1528 -157 4.9 TTGATGTCTATCAA
Enterobacter sp. 638 Ent638_2283 -117 4.1 TTAATCTGGATCAA
Erwinia amylovora ATCC 49946 EAM_1884 -160 5.4 TTGATCTAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2303 -160 4.8 TTGATCTGGATCAA
Escherichia coli str. K-12 substr. MG1655 b1256 -162 4.8 TTGATTTAAATCAC
-117 4.1 TTAATCCAGATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01248 -247 4.2 TTGATTTCACTCAT
-80 4.1 TTAATCTGGATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2478 -160 5 TTGATTTGGATCAA
Proteus mirabilis HI4320 PMI1350 -164 4.8 TTGATGTGGATCAA
Salmonella typhimurium LT2 STM1732 -117 4.1 TTAATCTGGATCAA
Serratia proteamaculans 568 Spro_2674 -131 5 TTGATTCAGATCAA
Yersinia pestis KIM y2044 -171 3.6 ATGATAAATGGCAA
-147 4.4 ATGATCCAGATCAA
Position: -274
Score: 4.4
Sequence: ATGATTTAAATCAC
Locus tag: Spro_2704
Spro_2704 -274 4.4 ATGATTTAAATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Citrobacter koseri ATCC BAA-895 CKO_01318 -238 4.1 TTGATCTGGATCAC
Enterobacter sp. 638 Ent638_2304 -249 4.5 TTGATTCAGATCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2326 -311 3.6 TCGATGTTGATCAC
-305 3.8 TTGATCACAAAAAA
Escherichia coli str. K-12 substr. MG1655 b1241 -237 4.3 TTGATTTGGATCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02199 -233 4.7 TTGATCTAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu2496 -134 4.5 GTGATTAAGATCAA
Proteus mirabilis HI4320 PMI1486 -242 3.8 GTGATGTAGATCAC
Salmonella typhimurium LT2 STM1749 -238 4.7 TTGATTTAGATCAC
Serratia proteamaculans 568 Spro_2704 -274 4.4 ATGATTTAAATCAC
Position: -140
Score: 4.7
Sequence: TTGATCGCAATCAA
Locus tag: Spro_2883
Spro_2883 -140 4.7 TTGATCGCAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narG
Ortholog function: Respiratory nitrate reductase alpha chain (EC 1.7.99.4)
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2031 -141 4.7 TTGATCGTTATCAA
Proteus mirabilis HI4320 PMI3571 -73 4.3
Serratia proteamaculans 568 Spro_2883 -140 4.7 TTGATCGCAATCAA
Position: -75
Score: 5.4
Sequence: TTGATTTACATCAA
Locus tag: Spro_2898
Spro_2898 -75 5.4 TTGATTTACATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narK
Ortholog function: Nitrate/nitrite antiporter
Proteus mirabilis HI4320 PMI3570 -73 4.3
Serratia proteamaculans 568 Spro_2898 -75 5.4
Position: -301
Score: 5.3
Sequence: TTGATGTAAATCAA
Locus tag: Spro_2899
Spro_2899 -301 5.3 TTGATGTAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narX
Ortholog function: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
Enterobacter sp. 638 Ent638_2317 -251 5.5 TTGATATAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2029 -268 4.9 TTGATGCAAATCAA
Escherichia coli str. K-12 substr. MG1655 b1222 -279 5.4 TTGATGTAAATCAA
-241 4.6 TTGATATTTATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02216 -251 5.5 TTGATATAAATCAA
Proteus mirabilis HI4320 PMI3569 -235 4.5 ATGATCTGCATCAA
Salmonella typhimurium LT2 STM1766 -281 5.5 TTGATATAAATCAA
Serratia proteamaculans 568 Spro_2899 -301 5.4 TTGATGTAAATCAA
Position: -139
Score: 3.7
Sequence: TTATTTAAAATCAG
Locus tag: Spro_3192
Spro_3192 -139 3.7 TTATTTAAAATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: katG
Ortholog function: Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7)
Escherichia coli str. K-12 substr. MG1655 b3942 -141 4.4 TTAATTAAGATCAA
-126 3.8 TTGATCTACATCTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01819 -248 4.1 TTGTCATATCTCAA
Salmonella typhimurium LT2 STM4106 -126 3.8 TTGATCTACATCTC
Serratia proteamaculans 568 Spro_3192 -139 3.7 TTATTTAAAATCAG
Position: -298
Score: 3.7
Sequence: TTGGTTTATATCTA
Position: -280
Score: 3.8
Sequence: TTTCTACACATCAA
Locus tag: Spro_3308
Spro_3308 -298 3.7 TTGGTTTATATCTA
-280 3.8 TTTCTACACATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nuoA
Ortholog function: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00508 -198 4 TCGATGTAAATTAA
Edwardsiella tarda EIB202 ETAE_2385 -292 3.7 TTGATGTAAACGAA
Escherichia coli str. K-12 substr. MG1655 b2288 -433 3.7 ATGATGTTAAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02678 -392 3.6 TTGATTTACGACGG
Photorhabdus luminescens subsp. laumondii TTO1 plu3089 -207 3.8 TTGTTATTTGTAAA
Salmonella typhimurium LT2 STM2328 -199 4.6 TTGATGTAAATTAA
Serratia proteamaculans 568 Spro_3308 -280 3.8 TTTCTACACATCAA
Yersinia pestis KIM y1630 -465 3.6 TTTTATTAAAACAA
Position: -121
Score: 4.1
Sequence: ATGATGTTAATCAT
Position: -112
Score: 3.7
Sequence: ATCATAAATGTCAA
Locus tag: Spro_3316
Spro_3316 -121 4.1 ATGATGTTAATCAT
-112 3.7 ATCATAAATGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: Acetate kinase (EC 2.7.2.1)
Citrobacter koseri ATCC BAA-895 CKO_00498 -92 4.1 ATGATGTTAATCAT
Edwardsiella tarda EIB202 ETAE_2397 -93 4.1 ATGATGTTAATCAT
Enterobacter sp. 638 Ent638_2840 -92 4.1 ATGATGTTAATCAT
Erwinia amylovora ATCC 49946 EAM_2301 -119 3.9 TTGCTTTCGGACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3039 -91 4.1 ATGATGTTAATCAT
Escherichia coli str. K-12 substr. MG1655 b2296 -92 4.1 ATGATGTTAATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02687 -91 4.1 ATGATGTTAATCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu3095 -117 4.1 ATGATGTTAATCAT
Proteus mirabilis HI4320 PMI1771 -165 3.7 TTGATGATTGGCAA
Salmonella typhimurium LT2 STM2337 -92 4.1 ATGATGTTAATCAT
Serratia proteamaculans 568 Spro_3316 -121 4.1 ATGATGTTAATCAT
Yersinia pestis KIM y1622 -163 4.1 ATGATGTTAATCAT
Position: 0
Score: 3.5
Sequence: ATGAGCGAAGACAA
Locus tag: Spro_3484
Spro_3484 0 3.5 ATGAGCGAAGACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napC
Ortholog function: Cytochrome c-type protein NapC
Citrobacter koseri ATCC BAA-895 CKO_00573 -35 3.4 TTGCCCGACATCAG
Escherichia coli str. K-12 substr. MG1655 b2202 -46 3.2 TTGGTCGCTCTCAA
Salmonella typhimurium LT2 STM2255 -90 3.3 CTTATTTACAAAAA
Position: -350
Score: 3.6
Sequence: TTGATCTGGCGCAA
Locus tag: Spro_3488
Spro_3488 -350 3.6 TTGATCTGGCGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napF
Ortholog function: Ferredoxin-type protein NapF (periplasmic nitrate reductase)
Escherichia coli str. K-12 substr. MG1655 b2208 -46 3.2 TTGGTCGCTCTCAA
Salmonella typhimurium LT2 STM2261 -90 3.3 CTTATTTACAAAAA
Position: -137
Score: 4.4
Sequence: TTGATCGCAGTCAA
Locus tag: Spro_3543
Spro_3543 -137 4.4 TTGATCGCAGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfgF
Ortholog function: Predicted cytochrome C-type biogenesis protein
Serratia proteamaculans 568 Spro_3543 -137 4.4 TTGATCGCAGTCAA
Position: -189
Score: 4.2
Sequence: TTGACATAAAACAT
Position: -136
Score: 4.9
Sequence: TTGACTTTAATCAA
Locus tag: Spro_3682
Spro_3682 -189 4.2 TTGACATAAAACAT
-136 4.9 TTGACTTTAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfiD
Ortholog function: Stress-induced alternate pyruvate formate-lyase subunit
Edwardsiella tarda EIB202 ETAE_2732 -27 4.3 TTGCTCTATCTCAA
Proteus mirabilis HI4320 PMI1898 -180 5.2 TTGATTTAAAACAA
-127 5.1 TTGATATTTATCAA
Serratia proteamaculans 568 Spro_3682 -189 4.2 TTGACATAAAACAT
-136 4.9 TTGACTTTAATCAA
Yersinia pestis KIM y1282 -180 4.6 TTGATATAAAACAT
-127 5.1 TTGATTTGAATCAA
Position: -222
Score: 5
Sequence: TTGATTAAAGTCAA
Position: -169
Score: 4.4
Sequence: ATGTTTTATGTCAA
Locus tag: Spro_3683
Spro_3683 -222 5 TTGATTAAAGTCAA
-169 4.4 ATGTTTTATGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ung
Ortholog function: Uracil-DNA glycosylase (EC 3.2.2.27)
Citrobacter koseri ATCC BAA-895 CKO_00204 -209 5.6 TTGATTTAAATCAA
-156 5.1 TTGTTTTACATCAA
Edwardsiella tarda EIB202 ETAE_2734 -396 4.1 TTGAGATAGAGCAA
-280 5.4 TTGATCTAAATCAA
-227 4.7 ATGTTTTACATCAA
Enterobacter sp. 638 Ent638_3065 -194 5 TTGACCTAAATCAA
-142 5.1 TTGTTTTATATCAA
34 4.2 CTGATGAAAAACAA
Erwinia amylovora ATCC 49946 EAM_2526 -177 4.9 TTGATGCAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3289 -228 5.1 TTGACTTAAATCAA
-175 5.1 TTGTTTTATATCAA
Escherichia coli str. K-12 substr. MG1655 b2580 -197 5.6 TTGATTTAAATCAA
-144 5.1 TTGTTTTACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02903 -206 5.5 TTGATATAAATCAA
-153 5.1 TTGTTTTACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3371 -233 4.1 TTGATTCAGAACAG
Proteus mirabilis HI4320 PMI1899 -221 5.1 TTGATAAATATCAA
-168 5.2 TTGTTTTAAATCAA
Salmonella typhimurium LT2 STM2647 -208 5.6 TTGATTTAAATCAA
-155 5.1 TTGTTTTACATCAA
Serratia proteamaculans 568 Spro_3683 -222 5 TTGATTAAAGTCAA
-169 4.4 ATGTTTTATGTCAA
Yersinia pestis KIM y1281 -213 5.2 TTGATTCAAATCAA
-160 4.7 ATGTTTTATATCAA
Position: -189
Score: 3.8
Sequence: CAGATTAAAATCAA
Position: -101
Score: 3.3
Sequence: TTTTTTTAACTTAA
Position: -69
Score: 3.3
Sequence: TCGCTATCCCTCAA
Locus tag: Spro_3863
Spro_3863 -189 3.8 CAGATTAAAATCAA
-101 3.3 TTTTTTTAACTTAA
-69 3.3 TCGCTATCCCTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuB
Ortholog function: C4-dicarboxylate transporter DcuB
Edwardsiella tarda EIB202 ETAE_2844 -271 3.4 TTATTTTTTATTAA
Enterobacter sp. 638 Ent638_2479 -93 3.6 TTGAATTTATACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1533 -279 3.7 TTTATTTTCATGAA
-243 4.5 TAGATTTAGATCAA
Escherichia coli str. K-12 substr. MG1655 b4123 -283 4 CCGATAAATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04367 -210 3.4 TCTACTCATATCAA
Proteus mirabilis HI4320 PMI0389 -78 3.4 TTGTTTTTTTGCAA
Salmonella typhimurium LT2 STM4301 -72 3.5 TTCACAAAAATCAG
Serratia proteamaculans 568 Spro_3863 -189 3.8 CAGATTAAAATCAA
Yersinia pestis KIM y0901 -239 3.4 TTAATTTAAAGCAC
Position: -117
Score: 4.5
Sequence: CTGATTTCGATCAA
Locus tag: Spro_4012
Spro_4012 -117 4.5 CTGATTTCGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhR
Ortholog function: Pyruvate dehydrogenase complex transcriptional regulator PdhR, GntR family
Citrobacter koseri ATCC BAA-895 CKO_03260 -116 4.7 CTGATTTCAATCAA
Edwardsiella tarda EIB202 ETAE_0658 -165 4.5 TTGATTGTTAACAA
-139 5 ATGATTTACATCAA
Enterobacter sp. 638 Ent638_0659 -116 4.7 CTGATTTCAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3790 -116 4.2 GTGATTTAGCTCAA
Escherichia coli str. K-12 substr. MG1655 b0113 -115 4.8 ATGATTTCAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00117 -114 4.7 CTGATTTCAATCAA
Proteus mirabilis HI4320 PMI2047 -245 4 ATGTGTTTAATCAA
-134 4.2 ATGATTTCGCTCAA
Salmonella typhimurium LT2 STM0151 -116 4.7 CTGATTTCAATCAA
Serratia proteamaculans 568 Spro_4012 -117 4.6 CTGATTTCGATCAA
Yersinia pestis KIM y0766 -135 4.4 ATGATTTCGGTCAA
Position: -227
Score: 3.9
Sequence: TTGAGTGATATCAC
Locus tag: Spro_4321
Spro_4321 -227 3.9 TTGAGTGATATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxaC
Ortholog function: Uronate isomerase (EC 5.3.1.12)
Serratia proteamaculans 568 Spro_4321 -227 3.9 TTGAGTGATATCAC
Yersinia pestis KIM y3600 -225 3.8 TTGAGTGACATCAC
Position: -74
Score: 4.1
Sequence: TTGATCTCTGTCAT
Locus tag: Spro_4343
Spro_4343 -74 4.1 TTGATCTCTGTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhcC
Ortholog function: COG1242: Predicted Fe-S oxidoreductase
Enterobacter sp. 638 Ent638_3655 -65 3.7 TTTATTCAAATGAA
-32 4 TTGATCCAGGTCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0313 -70 3.7 TTGATCGCGGTCAT
Escherichia coli str. K-12 substr. MG1655 b3211 -75 4 TTGATCCAGGTCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03623 -75 4 TTGATCCAGGTCAT
Salmonella typhimurium LT2 STM3329 -75 4 TTGATCCAGGTCAT
Serratia proteamaculans 568 Spro_4343 -74 4.2 TTGATCTCTGTCAT
Yersinia pestis KIM y0127 -133 4.2 TTGATCTCTGTCAT
Position: -330
Score: 3.6
Sequence: ATATTAAATATCAA
Locus tag: Spro_4344
Spro_4344 -330 3.6 ATATTAAATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltB
Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Escherichia coli str. K-12 substr. MG1655 b3212 -156 3.9 TTGACCTGTATCAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03624 -114 3.9 ATGTTGTACGACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4009 -362 4.1 GTGATATAAATCAC
-334 4.1 CTGATCTATATCAC
Proteus mirabilis HI4320 PMI3677 -353 3.7 TTATCTAACATCAA
-252 4.1 TTTTTATTTATCAA
Serratia proteamaculans 568 Spro_4344 -330 3.6 ATATTAAATATCAA
Yersinia pestis KIM y0128 -72 3.8 CTGTCTGATATCAA
Position: -223
Score: 3.6
Sequence: TTGCTGGAGATCAC
Locus tag: Spro_4464
Spro_4464 -223 3.6 TTGCTGGAGATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ubiC
Ortholog function: Chorismate--pyruvate lyase (EC 4.1.3.40)
Erwinia amylovora ATCC 49946 EAM_0260 -194 3.8 CTGATATTAGTCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0626 -230 3.3 GTGACTAGGGTCAA
Escherichia coli str. K-12 substr. MG1655 b4039 -70 3.4 TTGCTTTACATCTC
Photorhabdus luminescens subsp. laumondii TTO1 plu4378 -253 3.8 TTATTTTTGGTCAA
Proteus mirabilis HI4320 PMI2753 -163 4.3 TTGTTTTTTCTCAA
Serratia proteamaculans 568 Spro_4464 -223 3.6 TTGCTGGAGATCAC
Yersinia pestis KIM y0568 -253 3.3 CTGATATTTATAAT
Position: -72
Score: 5
Sequence: TTGATTTGCATCAA
Locus tag: Spro_4595
Spro_4595 -72 5 TTGATTTGCATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirB
Ortholog function: Nitrite reductase, large subunit (EC 1.7.1.4)
Citrobacter koseri ATCC BAA-895 CKO_04789 -72 5.4 TTGATTTACATCAA
Enterobacter sp. 638 Ent638_3793 -72 5 TTGATTTGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4079 -71 5.3 TTGATATACATCAA
Escherichia coli str. K-12 substr. MG1655 b3365 -72 5.4 TTGATTTACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03752 -72 5 TTGATTTGCATCAA
Proteus mirabilis HI4320 PMI1479 -72 5.1 TTGATATTCATCAA
Salmonella typhimurium LT2 STM3474 -72 5.4 TTGATTTACATCAA
Serratia proteamaculans 568 Spro_4595 -72 5 TTGATTTGCATCAA
Yersinia pestis KIM y3945 -71 5.4 TTGATTTACATCAA
Position: -284
Score: 3.8
Sequence: CTGATTTAACTCAC
Locus tag: Spro_4628
Spro_4628 -284 3.8 CTGATTTAACTCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Citrobacter koseri ATCC BAA-895 CKO_04830 -204 4.1 TTGAGCCATGTCAA
Enterobacter sp. 638 Ent638_3821 -133 4.2 TTGAGCAAGGTCAA
Escherichia coli str. K-12 substr. MG1655 b3408 -203 4.4 TTGAGCCACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03778 -198 3.8 TTGCGGCATATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0209 -206 3.5 TGGATGCAAATCAT
Proteus mirabilis HI4320 PMI2920 -190 5.2 TTGATGTACATCAA
Salmonella typhimurium LT2 STM3505 -204 4.4 TTGAGCCATATCAA
Serratia proteamaculans 568 Spro_4628 -284 3.8 CTGATTTAACTCAC
Yersinia pestis KIM y3912 -93 4 ATTATTTAAATCAT
Position: -22
Score: 4
Sequence: TTGACTGATATCAC
Locus tag: Spro_4629
Spro_4629 -22 4 TTGACTGATATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoB
Ortholog function: Ferrous iron transport protein B
Citrobacter koseri ATCC BAA-895 CKO_04831 -204 4.1 TTGAGCCATGTCAA
Enterobacter sp. 638 Ent638_3822 -133 4.2 TTGAGCAAGGTCAA
Escherichia coli str. K-12 substr. MG1655 b3409 -203 4.4 TTGAGCCACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03779 -198 3.8 TTGCGGCATATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0208 -206 3.5 TGGATGCAAATCAT
Proteus mirabilis HI4320 PMI2921 -190 5.2 TTGATGTACATCAA
Salmonella typhimurium LT2 STM3506 -204 4.4 TTGAGCCATATCAA
Serratia proteamaculans 568 Spro_4629 -284 3.8 CTGATTTAACTCAC
Yersinia pestis KIM y3911 -93 4 ATTATTTAAATCAT
Position: -145
Score: 4
Sequence: GTGACTTGAATCAA
Locus tag: Spro_4807
Spro_4807 -145 4 GTGACTTGAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pfkA
Ortholog function: 6-phosphofructokinase (EC 2.7.1.11)
Citrobacter koseri ATCC BAA-895 CKO_03085 -132 4 CTGACCTGAATCAA
Edwardsiella tarda EIB202 ETAE_3450 -223 4 CTGACCTGAATCAA
Enterobacter sp. 638 Ent638_4056 -174 4 CTGACCTGAATCAA
Erwinia amylovora ATCC 49946 EAM_0103 -31 4 ATTATTTGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4307 -140 4 CTGACCTGAATCAA
Escherichia coli str. K-12 substr. MG1655 b3916 -125 4 CTGACCTGAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04223 -123 4 CTGACCTGAATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4774 -203 4.1 TTGATCTCAAAAAA
Proteus mirabilis HI4320 PMI3203 -194 3.7 TTAATGCGCATCAA
Salmonella typhimurium LT2 STM4062 -126 4 CTGACCTGAATCAA
Serratia proteamaculans 568 Spro_4807 -145 4.1 GTGACTTGAATCAA
Yersinia pestis KIM y0059 -148 4.2 CTGACTTGAATCAA