Propagation of KdgR regulog to Escherichia coli O157:H7 str. EC4024
| Source regulog: | KdgR - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | IclR |
| Regulation mode: | repressor (activator) |
| Biological process: | Pectin and polygalacturonate utlization |
| Effector: | 2-keto-3-deoxygluconate |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Escherichia coli O157:H7 str. EC4024 |
| Orthologous TF(s) | EscherichcoliO157_010100025555 |
| Regulated genes | 11 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -86
Score: 5.3 Sequence: TAATGGAACACTGTTTTAATA
Locus tag: EscherichcoliO157_010100001120
|
||||
| EscherichcoliO157_010100001120 | -86 | 5.3 | TAATGGAACACTGTTTTAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgK | ||||
| Ortholog function: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3526 | -86 | 5.3 | TAATGGAACACTGTTTTAATA |
|
Position: -130
Score: 6.3 Sequence: AAATGAAACATTGTTTTATTT
Position: -63
Score: 5.4 Sequence: AAACGAAACAGTGTTTCACTA
Locus tag: EscherichcoliO157_010100008277
|
||||
| EscherichcoliO157_010100008277 | -130 | 6.3 | AAATGAAACATTGTTTTATTT | |
| -63 | 5.4 | AAACGAAACAGTGTTTCACTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kduI | ||||
| Ortholog function: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2843 | -130 | 6.3 | AAATGAAACATTGTTTTATTT |
| -63 | 5.4 | AAACGAAACAGTGTTTCACTA | ||
| Salmonella typhimurium LT2 | STM3018 | -123 | 6.2 | AAATGAAACGTTGTTTTATTT |
| -58 | 5.3 | AATCAAAACAGTGTTTTGATT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04220 | -119 | 6.2 | AAATGAAACAACGTTTTATTT |
| -51 | 4.4 | AAACGGAACGGTGTTTCGCCT | ||
| Enterobacter sp. 638 | Ent638_3296 | -127 | 5.4 | AACTGAAACAACGTTTTAAAT |
| -60 | 5 | AATCGGAACATTGTTTCGTTA | ||
| Yersinia pestis KIM | y1887 | -201 | 6 | TAATAAAACATCATTTCATTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2400 | -209 | 6.1 | AAATAAAACATTATTTCATTT |
| Edwardsiella tarda EIB202 | ETAE_1898 | -129 | 5.6 | AATCAAAACAGCATTTCATTT |
|
Position: -64
Score: 5.4 Sequence: ATAAAAAACGGCGTTTCATAA
Locus tag: EscherichcoliO157_010100012411
|
||||
| EscherichcoliO157_010100012411 | -64 | 5.4 | ATAAAAAACGGCGTTTCATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ygjV | ||||
| Ortholog function: putative transport protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3090 | -64 | 5.4 | ATAAAAAACGGCGTTTCATAA |
| Yersinia pestis KIM | y3597 | -133 | 5.2 | ATATGAAACGGTGTTCTGTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0648 | -70 | 6.2 | AAATAAAACGGCGTTTCATTT |
|
Position: -140
Score: 5.8 Sequence: AAATAAAACAGCGTTTCAGTT
Locus tag: EscherichcoliO157_010100014067
|
||||
| EscherichcoliO157_010100014067 | -140 | 5.8 | AAATAAAACAGCGTTTCAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgT | ||||
| Ortholog function: 2-keto-3-deoxygluconate permease | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3909 | -140 | 6 | AAATAAAACAGCGTTTCAATT |
| Citrobacter koseri ATCC BAA-895 | CKO_03092 | -147 | 5.6 | AAATGAAACATAGTTTTGTTA |
|
Position: -37
Score: 6 Sequence: AATTGAAACAATGTTTCATTA
Locus tag: EscherichcoliO157_010100029495
|
||||
| EscherichcoliO157_010100029495 | -37 | 6 | AATTGAAACAATGTTTCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgF | ||||
| Ortholog function: Pectin degradation protein KdgF | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04218 | -38 | 5.6 | AGTTGAAACATTGTTTCAATA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03255 | -39 | 5.8 | AAATGAAACAATGTTTCACTT |
| Enterobacter sp. 638 | Ent638_3287 | -38 | 5.5 | AATTAAAACAATGTTTCACTA |
| Yersinia pestis KIM | y1888 | -155 | 6 | AAATGAAATGATGTTTTATTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2399 | -174 | 6.1 | AAATGAAATAATGTTTTATTT |
|
Position: -49
Score: 4.8 Sequence: AACTAAAACACCGTTTTAACG
Locus tag: EscherichcoliO157_010100030050
|
||||
| EscherichcoliO157_010100030050 | -49 | 4.8 | AACTAAAACACCGTTTTAACG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rhiA | ||||
| Ortholog function: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04899 | -138 | 5.1 | TTTTAAACCATCGTTTCAATT |
| -50 | 4.8 | AACTAAAACAATGTTTTAACG | ||
| Enterobacter sp. 638 | Ent638_3876 | -134 | 4.5 | TTTCAAACCATCGTTTCAAAA |
| -49 | 4.8 | AACTAAAACAACGTTTTAACG | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0357 | -239 | 5.6 | ATATAAAACAGCATTTCATAT |
|
Position: -225
Score: 5.7 Sequence: AACTAAAACACTGTTTTATTT
Locus tag: EscherichcoliO157_010100032521
|
||||
| EscherichcoliO157_010100032521 | -225 | 5.7 | AACTAAAACACTGTTTTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgT | ||||
| Ortholog function: 2-keto-3-deoxygluconate permease | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03757 | -231 | 5.7 | AACTAAAACAGTGTTTTATTT |
| Enterobacter sp. 638 | Ent638_0314 | -232 | 5.8 | AACTAAAACATTGTTTTATTT |