Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of KdgR regulog to Escherichia coli O157:H7 str. EC4024

Reference regulog properties
Source regulog: KdgR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: IclR
Regulation mode: repressor (activator)
Biological process: Pectin and polygalacturonate utlization
Effector: 2-keto-3-deoxygluconate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Escherichia coli O157:H7 str. EC4024
Orthologous TF(s) EscherichcoliO157_010100025555
Regulated genes 11
Built upon 159 sites [see more]
Predicted regulatory interactions in Escherichia coli O157:H7 str. EC4024
Locus tag Position Score Sequence
Position: -86
Score: 5.3
Sequence: TAATGGAACACTGTTTTAATA
Locus tag: EscherichcoliO157_010100001120
EscherichcoliO157_010100001120 -86 5.3 TAATGGAACACTGTTTTAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgK
Ortholog function: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Escherichia coli str. K-12 substr. MG1655 b3526 -86 5.3 TAATGGAACACTGTTTTAATA
Position: -130
Score: 6.3
Sequence: AAATGAAACATTGTTTTATTT
Position: -63
Score: 5.4
Sequence: AAACGAAACAGTGTTTCACTA
Locus tag: EscherichcoliO157_010100008277
EscherichcoliO157_010100008277 -130 6.3 AAATGAAACATTGTTTTATTT
-63 5.4 AAACGAAACAGTGTTTCACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kduI
Ortholog function: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Escherichia coli str. K-12 substr. MG1655 b2843 -130 6.3 AAATGAAACATTGTTTTATTT
-63 5.4 AAACGAAACAGTGTTTCACTA
Salmonella typhimurium LT2 STM3018 -123 6.2 AAATGAAACGTTGTTTTATTT
-58 5.3 AATCAAAACAGTGTTTTGATT
Citrobacter koseri ATCC BAA-895 CKO_04220 -119 6.2 AAATGAAACAACGTTTTATTT
-51 4.4 AAACGGAACGGTGTTTCGCCT
Enterobacter sp. 638 Ent638_3296 -127 5.4 AACTGAAACAACGTTTTAAAT
-60 5 AATCGGAACATTGTTTCGTTA
Yersinia pestis KIM y1887 -201 6 TAATAAAACATCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2400 -209 6.1 AAATAAAACATTATTTCATTT
Edwardsiella tarda EIB202 ETAE_1898 -129 5.6 AATCAAAACAGCATTTCATTT
Position: -64
Score: 5.4
Sequence: ATAAAAAACGGCGTTTCATAA
Locus tag: EscherichcoliO157_010100012411
EscherichcoliO157_010100012411 -64 5.4 ATAAAAAACGGCGTTTCATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygjV
Ortholog function: putative transport protein
Escherichia coli str. K-12 substr. MG1655 b3090 -64 5.4 ATAAAAAACGGCGTTTCATAA
Yersinia pestis KIM y3597 -133 5.2 ATATGAAACGGTGTTCTGTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0648 -70 6.2 AAATAAAACGGCGTTTCATTT
Position: -140
Score: 5.8
Sequence: AAATAAAACAGCGTTTCAGTT
Locus tag: EscherichcoliO157_010100014067
EscherichcoliO157_010100014067 -140 5.8 AAATAAAACAGCGTTTCAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgT
Ortholog function: 2-keto-3-deoxygluconate permease
Escherichia coli str. K-12 substr. MG1655 b3909 -140 6 AAATAAAACAGCGTTTCAATT
Citrobacter koseri ATCC BAA-895 CKO_03092 -147 5.6 AAATGAAACATAGTTTTGTTA
Position: -37
Score: 6
Sequence: AATTGAAACAATGTTTCATTA
Locus tag: EscherichcoliO157_010100029495
EscherichcoliO157_010100029495 -37 6 AATTGAAACAATGTTTCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgF
Ortholog function: Pectin degradation protein KdgF
Citrobacter koseri ATCC BAA-895 CKO_04218 -38 5.6 AGTTGAAACATTGTTTCAATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03255 -39 5.8 AAATGAAACAATGTTTCACTT
Enterobacter sp. 638 Ent638_3287 -38 5.5 AATTAAAACAATGTTTCACTA
Yersinia pestis KIM y1888 -155 6 AAATGAAATGATGTTTTATTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2399 -174 6.1 AAATGAAATAATGTTTTATTT
Position: -49
Score: 4.8
Sequence: AACTAAAACACCGTTTTAACG
Locus tag: EscherichcoliO157_010100030050
EscherichcoliO157_010100030050 -49 4.8 AACTAAAACACCGTTTTAACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiA
Ortholog function: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit
Citrobacter koseri ATCC BAA-895 CKO_04899 -138 5.1 TTTTAAACCATCGTTTCAATT
-50 4.8 AACTAAAACAATGTTTTAACG
Enterobacter sp. 638 Ent638_3876 -134 4.5 TTTCAAACCATCGTTTCAAAA
-49 4.8 AACTAAAACAACGTTTTAACG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0357 -239 5.6 ATATAAAACAGCATTTCATAT
Position: -225
Score: 5.7
Sequence: AACTAAAACACTGTTTTATTT
Locus tag: EscherichcoliO157_010100032521
EscherichcoliO157_010100032521 -225 5.7 AACTAAAACACTGTTTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgT
Ortholog function: 2-keto-3-deoxygluconate permease
Citrobacter koseri ATCC BAA-895 CKO_03757 -231 5.7 AACTAAAACAGTGTTTTATTT
Enterobacter sp. 638 Ent638_0314 -232 5.8 AACTAAAACATTGTTTTATTT
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