Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of KdgR regulog to Yersinia enterocolitica subsp. enterocolitica 8081

Reference regulog properties
Source regulog: KdgR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: IclR
Regulation mode: repressor (activator)
Biological process: Pectin and polygalacturonate utlization
Effector: 2-keto-3-deoxygluconate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Yersinia enterocolitica subsp. enterocolitica 8081
Orthologous TF(s) YE1877
Regulated genes 20
Built upon 159 sites [see more]
Predicted regulatory interactions in Yersinia enterocolitica subsp. enterocolitica 8081
Locus tag Position Score Sequence
Position: -37
Score: 5.5
Sequence: TTATAAAACACTGTTTCTTTA
Locus tag: YE0164
YE0164 -37 5.5 TTATAAAACACTGTTTCTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pehX
Ortholog function: Exo-poly-alpha-D-galacturonosidase precursor (EC 3.2.1.82)
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3111 -291 4.9 TAATGAAACCATGTTTTACCA
Position: -42
Score: 6
Sequence: TAATGAAACATCATTTCATTT
Locus tag: YE0492
YE0492 -42 6 TAATGAAACATCATTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjgK
Ortholog function: cytoplasmic protein involved in polygalacturonate utilization
Escherichia coli str. K-12 substr. MG1655 b4252 -35 6 AAATGAAACGTTGTTTTAATT
Salmonella typhimurium LT2 STM4468 -32 5.7 AAATAAAACGCTGTTTTAACT
Citrobacter koseri ATCC BAA-895 CKO_03553 -33 6.2 AAATGAAACGTTGTTTTATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04658 -33 5.8 AAATGAAATGCTGTTTTATAT
Enterobacter sp. 638 Ent638_0453 -34 6 AAATGAAACATTGTTTTATAT
Yersinia pestis KIM y0739 -41 5.9 TAATAAAACAGCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0383 -41 5.1 TTGTAAAACAGGGTTTCATTT
Edwardsiella tarda EIB202 ETAE_3112 -39 5.6 AAATAAAACGCAGTTTTATAA
Position: -114
Score: 5.6
Sequence: AAATGGAATATCGTTTCATTT
Locus tag: YE0549
YE0549 -114 5.6 AAATGGAATATCGTTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pemA
Ortholog function: Putative pectinesterase (EC 3.1.1.11)
Yersinia pestis KIM y3757 -149 5.3 AAATGGAATTGCGTTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3253 -213 5.1 TATTAAAATAACATTTCACTT
Position: -91
Score: 6
Sequence: TAATGAAACATTGTTTTAATT
Locus tag: YE1403
YE1403 -91 6 TAATGAAACATTGTTTTAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: togT
Ortholog function: Oligogalacturonide transporter
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02398 -46 5.2 TATAAAAACAGTGTTTCAAAA
Yersinia pestis KIM y2961 -47 4.5 AAAGAAAACAGTTATTCATTA
-25 6.1 AAATGAAACATTGTTTTAATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0817 -60 4.5 TAAAGAAATGATAGTTCAATC
-38 5.5 AACTGAAATATTGTTTCATAT
Position: -43
Score: 6
Sequence: TAACGAAACAATGTTTCATTT
Locus tag: YE1601
YE1601 -43 6 TAACGAAACAATGTTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgX
Ortholog function: predicted 2-keto-3-deoxygluconate permease
Salmonella typhimurium LT2 STM4395 -34 5.8 AAATAAAACATTATTTTAATT
Citrobacter koseri ATCC BAA-895 CKO_03627 -31 5.2 AAATAAAACATTATTTCAAAG
Enterobacter sp. 638 Ent638_0375 -33 5.9 AATTGAAACGTCATTTTATTT
Yersinia pestis KIM y1734 -22 5.8 TAACGAAACATCATTTCATTT
Position: -97
Score: 5.7
Sequence: AAATGAAACATCGTTTCTATA
Locus tag: YE1876
YE1876 -97 5.7 AAATGAAACATCGTTTCTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ogl
Ortholog function: Oligogalacturonate lyase (EC 4.2.2.6)
Enterobacter sp. 638 Ent638_3293 -226 5.1 AATTAAAACGCCGTTTTACAA
Yersinia pestis KIM y1875 -96 5.8 AAATGAAACATTGTTTCTATA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2426 -180 5.8 AAATGAAACATTGTTTCTATA
Position: -76
Score: 4.7
Sequence: AATAAAACCACTGTTCTATTT
Locus tag: YE1877
YE1877 -76 4.7 AATAAAACCACTGTTCTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgR
Ortholog function: 2-keto-3-deoxy-D-gluconate repressor, IclR family
Yersinia pestis KIM y1876 -76 4.7 AATAAAACCATTGTTCTATTT
Position: -114
Score: 5.6
Sequence: AAATGAAACATTGTTTCTTTG
Locus tag: YE1881
YE1881 -114 5.6 AAATGAAACATTGTTTCTTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgM
Ortholog function: Oligogalacturonate-specific porin protein KdgM
Yersinia pestis KIM y1880 -103 5.4 AAATGAAACATTGCTTCTTTT
Position: -76
Score: 5.2
Sequence: GATTGAAACGATGTTTCTATT
Locus tag: YE1886
YE1886 -76 5.2 GATTGAAACGATGTTTCTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pelW
Ortholog function: Exopolygalacturonate lyase (EC 4.2.2.9)
Yersinia pestis KIM y1885 -152 4.5 AATCAAAACAACGTTCCGACT
-76 5.2 GATTGAAACGATGTTTCTATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2402 -139 4.5 AATCAAAACAACGTTCCGACT
-61 5.3 AATCAAAACAGTGTTTCTATT
Position: -101
Score: 6
Sequence: TAATAAAACATCATTTCATTT
Locus tag: YE1888
YE1888 -101 6 TAATAAAACATCATTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kduI
Ortholog function: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Escherichia coli str. K-12 substr. MG1655 b2843 -130 6.3 AAATGAAACATTGTTTTATTT
-63 5.4 AAACGAAACAGTGTTTCACTA
Salmonella typhimurium LT2 STM3018 -123 6.2 AAATGAAACGTTGTTTTATTT
-58 5.3 AATCAAAACAGTGTTTTGATT
Citrobacter koseri ATCC BAA-895 CKO_04220 -119 6.2 AAATGAAACAACGTTTTATTT
-51 4.4 AAACGGAACGGTGTTTCGCCT
Enterobacter sp. 638 Ent638_3296 -127 5.4 AACTGAAACAACGTTTTAAAT
-60 5 AATCGGAACATTGTTTCGTTA
Yersinia pestis KIM y1887 -201 6 TAATAAAACATCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2400 -209 6.1 AAATAAAACATTATTTCATTT
Edwardsiella tarda EIB202 ETAE_1898 -129 5.6 AATCAAAACAGCATTTCATTT
Position: -157
Score: 6
Sequence: AAATGAAATGATGTTTTATTA
Locus tag: YE1889
YE1889 -157 6 AAATGAAATGATGTTTTATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgF
Ortholog function: Pectin degradation protein KdgF
Citrobacter koseri ATCC BAA-895 CKO_04218 -38 5.6 AGTTGAAACATTGTTTCAATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03255 -39 5.8 AAATGAAACAATGTTTCACTT
Enterobacter sp. 638 Ent638_3287 -38 5.5 AATTAAAACAATGTTTCACTA
Yersinia pestis KIM y1888 -155 6 AAATGAAATGATGTTTTATTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2399 -174 6.1 AAATGAAATAATGTTTTATTT
Position: -275
Score: 4.9
Sequence: ATACGAACCGTCGTTTCAGTT
Locus tag: YE2164
YE2164 -275 4.9 ATACGAACCGTCGTTTCAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pykF
Ortholog function: Pyruvate kinase (EC 2.7.1.40)
Escherichia coli str. K-12 substr. MG1655 b1676 -286 5 TTTTGAAACGCTGTTTTTGTT
Salmonella typhimurium LT2 STM1378 -286 4.7 TTTTGAAACAGGGTTTTCATT
Citrobacter koseri ATCC BAA-895 CKO_01709 -286 5 TTTTGAAACGCTGTTTTCATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02133 -285 5 ATTTGAAACGAGGTTTTTATT
Enterobacter sp. 638 Ent638_1768 -286 5.1 TTTTGAAACGCCGTTTCCATT
Serratia proteamaculans 568 Spro_2187 -203 4.1 AAtaacAACAcatTTTCATcT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1867 -259 5.1 ATACGGAACGTCGTTTCAATT
Position: -150
Score: 6
Sequence: ATATGAAACGGTGTTTTATTT
Locus tag: YE3705
YE3705 -150 6 ATATGAAACGGTGTTTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygjV
Ortholog function: putative transport protein
Escherichia coli str. K-12 substr. MG1655 b3090 -64 5.4 ATAAAAAACGGCGTTTCATAA
Yersinia pestis KIM y3597 -133 5.2 ATATGAAACGGTGTTCTGTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0648 -70 6.2 AAATAAAACGGCGTTTCATTT
Position: -91
Score: 5.5
Sequence: ATTTAAAACGTCGTTTTAATA
Locus tag: YE4065
YE4065 -91 5.5 ATTTAAAACGTCGTTTTAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgK
Ortholog function: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Yersinia pestis KIM y3838 -225 5.1 ATTTAAAACACCGTTTTAATC
Serratia proteamaculans 568 Spro_4750 -105 6.2 AAATAAAACGTTGTTTTATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4360 -125 5.4 AAATAAAACATCGTTTCAAGA
Edwardsiella tarda EIB202 ETAE_3377 -91 5.4 AAACAGAACGTTGTTTTATTT
Position: -78
Score: 5.2
Sequence: AAATAGAATGGCGTTTCATAA
Locus tag: YE4070
YE4070 -78 5.2 AAATAGAATGGCGTTTCATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgM
Ortholog function: Oligogalacturonate-specific porin protein KdgM
Enterobacter sp. 638 Ent638_0483 -304 4.9 TCTCAAAACATCATTTCATTT
Yersinia pestis KIM y3833 -75 5.7 AAATAAAATACTGTTTCATAA
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