Propagation of Crp regulog to Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150

Reference regulog properties
Source regulog:	Crp - Enterobacteriales
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	activator (repressor)
Biological process:	Carbon catabolism
Effector:	Cyclic 3',5'-AMP
Phylum:	Proteobacteria/gamma
Propagated regulon:
Target genome	Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
Orthologous TF(s)	SPA3332
Regulated genes	253

Built upon 2301 sites [see more]

Predicted regulatory interactions in *Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150*
	Locus tag	Position	Score	Sequence
Position: -103 Score: 4.2 Sequence: GAATGTGATCAATTTAAAAATT Locus tag: SPA0001
	SPA0001	-103	4.2	GAATGTGATCAATTTAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: thrL
Ortholog function: Thr operon leader peptide
Escherichia coli str. K-12 substr. MG1655	b0001	-83	3.8	TTTATTGACTTAGGTCACTAAA
Salmonella typhimurium LT2	STM0001	-103	4.2	GAATGTGATCAATTTAAAAATT

Position: -97 Score: 3.7 Sequence: AAACGAGCTATTCATCATATAT Locus tag: SPA0040
	SPA0040	-97	3.7	AAACGAGCTATTCATCATATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nhaA
Ortholog function: Na+/H+ antiporter NhaA type
Salmonella typhimurium LT2	STM0039	-97	3.7	AAACGAGCTATTCATCATATAT
Yersinia pestis KIM	y3704	-147	4.1	AAATGTGATATGCGTTATCAAT
Serratia proteamaculans 568	Spro_0694	-120	4.7	AAGTGTGATATAAATCGCTTAT
Proteus mirabilis HI4320	PMI0011	-110	3.9	ATAAGCGATTGAGATCGAAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu0587	-122	4.4	TATTGAGATGTAGATCATCAAT

Position: -134 Score: 3.8 Sequence: AAGCACGATATTGCTCACACTA Locus tag: SPA0069
	SPA0069	-134	3.8	AAGCACGATATTGCTCACACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: caiF
Ortholog function: transcriptional activator for carnitine metabolism
Escherichia coli str. K-12 substr. MG1655	b0034	-134	3.8	AAGCAGGATTTAGCTCACACTT
Salmonella typhimurium LT2	STM0068	-134	3.8	AAGCACGATATTGCTCACACTA
Citrobacter koseri ATCC BAA-895	CKO_03349	-144	3.8	AAGCACGATTTCGCTCACACTA

Position: -167 Score: 4.6 Sequence: AAGTGTGACACAGATAACAGAA Locus tag: SPA0075
	SPA0075	-167	4.6	AAGTGTGACACAGATAACAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: caiT
Ortholog function: L-carnitine/gamma-butyrobetaine antiporter
Salmonella typhimurium LT2	STM0074	-167	4.5	AAGTGTGACGAAGATAACAGAA

Position: -344 Score: 4.5 Sequence: TTCTGTTATCTGTGTCACACTT Position: -196 Score: 3.7 Sequence: AATATTGAAAATTTTCATATTT Position: -157 Score: 4 Sequence: ATTGGTGAGGTGCGTAACACTA Locus tag: SPA0076
	SPA0076	-344	4.5	TTCTGTTATCTGTGTCACACTT
		-196	3.7	AATATTGAAAATTTTCATATTT
		-157	4	ATTGGTGAGGTGCGTAACACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fixA
Ortholog function: electron transfer flavoprotein, beta subunit
Escherichia coli str. K-12 substr. MG1655	b0041	-215	4.1	ATTGGTGATCCATAAAACAATA
		-158	4	ATTGGTGAGGAACTTAACAATA
Salmonella typhimurium LT2	STM0075	-281	3.8	ATTTTTGCTTTATTTATCAATT
		-196	3.7	AATATTGAAAATTTTCATATTT
		-157	4	ATTGGTGAGGTGCGTAACACTA
Citrobacter koseri ATCC BAA-895	CKO_03341	-179	4	ATTGGTGATCCATCAAACAATA
		-122	4.4	ATTAGTGAGATGCTTAACAATA
Edwardsiella tarda EIB202	ETAE_2666	-258	3.7	ATTGGTGATCTATGTATTATTT
Proteus mirabilis HI4320	PMI2653	-216	4.3	ATTGTTGATCCAGATAACAATA
		-157	4.3	ATTGGTGATGTATTTAGCAATA
		-98	4	ATTGGTGATCTAGATTTAATTT

Position: -131 Score: 3.8 Sequence: ATATTTGCACAGCGTCACACTT Locus tag: SPA0105
	SPA0105	-131	3.8	ATATTTGCACAGCGTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araB
Ortholog function: L-ribulokinase
Escherichia coli str. K-12 substr. MG1655	b0063	-131	3.9	TTATTTGCACGGCGTCACACTT
Salmonella typhimurium LT2	STM0103	-131	3.8	ATATTTGCACAGCGTCACACTT
Citrobacter koseri ATCC BAA-895	CKO_03319	-132	3.9	ATATTTGCACGGCGTCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00062	-130	3.9	ATATTTGCACGGCGTCACACTT
Enterobacter sp. 638	Ent638_0610	-130	3.8	TTATTTGCACAGCGTCACACTT

Position: -231 Score: 4.5 Sequence: AAGTGTGACGCTGTGCAAATAT Locus tag: SPA0106
	SPA0106	-231	4.5	AAGTGTGACGCTGTGCAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araC
Ortholog function: DNA-binding transcriptional dual regulator
Escherichia coli str. K-12 substr. MG1655	b0064	-229	4.4	AAGTGTGACGCCGTGCAAATAA
Salmonella typhimurium LT2	STM0104	-231	4.5	AAGTGTGACGCTGTGCAAATAT
Citrobacter koseri ATCC BAA-895	CKO_03318	-230	4.4	AAGTGTGACGCCGTGCAAATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00063	-229	4.4	AAGTGTGACGCCGTGCAAATAT
Enterobacter sp. 638	Ent638_0611	-228	4.4	AAGTGTGACGCTGTGCAAATAA

Position: -127 Score: 3.8 Sequence: GGGTGTTATCTGCCTCACAGTT Locus tag: SPA0153
	SPA0153	-127	3.8	GGGTGTTATCTGCCTCACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araT
Ortholog function: putative permease of the Na+:galactoside symporter family
Salmonella typhimurium LT2	STM0149	-127	3.8	GGGTGTTATCTGCCTCACAGTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00115	-171	4.7	CATTGTTATCTGCTTCACACTT

Position: -302 Score: 3.1 Sequence: TGATTTGTTTTTATTCATTATT Position: -157 Score: 3.5 Sequence: AAACATGATTTCTGTAAAATTG Position: -120 Score: 3.2 Sequence: TTTACTGATTTCAATCAAAACC Locus tag: SPA0155
	SPA0155	-302	3.1	TGATTTGTTTTTATTCATTATT
		-157	3.5	AAACATGATTTCTGTAAAATTG
		-120	3.2	TTTACTGATTTCAATCAAAACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhR
Ortholog function: Transcriptional repressor for pyruvate dehydrogenase complex
Escherichia coli str. K-12 substr. MG1655	b0113	-156	3.7	AAACGTTATATATGTCAAGTTG
		-131	3.8	AAATGTGCACAGTTTCATGATT
Salmonella typhimurium LT2	STM0151	-157	3.5	AAACATGATTTCTGTAAAATTG
		-120	3.2	TTTACTGATTTCAATCAAAACC
		-79	3	CTTATTAAGCTTTCTCACGAAA
		-54	3.4	TAATGGGACAGGTTCCAGATAA
Citrobacter koseri ATCC BAA-895	CKO_03260	-180	3.2	ATTTGTGCATAGTTACATCTTT
		-157	3.1	AAACGTTATTTCTGTAATCTTG
		-148	3.3	TTCTGTAATCTTGTTAAAATGT
		-120	3.2	TTTACTGATTTCAATCAAAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00117	-155	3.2	AAATGTTATTTCTGTAAGGTTG
		-118	3.2	TTTACTGATTTCAATCAAAACC
Enterobacter sp. 638	Ent638_0659	-120	3.2	TTTACTGATTTCAATCAAAACC
		-77	3.1	TATTGTATTTTCTGGCGAAAAT
		-68	3	TTTAGCGATACGAATATGAAAT
Erwinia amylovora ATCC 49946	EAM_0746	-198	3.3	TAAAGCGATCGGATTTAACAAT
Yersinia pestis KIM	y0766	-151	4.2	AAATGTGCTGGGTTTCATGATT
		-139	3.3	TTTCATGATTTCGGTCAAGGTC
		-74	3.4	TTTTGAAATTGGTATTACCAAT
Serratia proteamaculans 568	Spro_4012	-132	3.1	AAATGTGCGGGTAACCTGATTT
		-56	3.4	TTTTGAAATTGGTATTACCAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3790	-120	3.7	ATTGGTGATTTAGCTCAAGGTC
		-55	3.4	TTTTGAAATTGGTATTACCAAT
Edwardsiella tarda EIB202	ETAE_0658	-143	3.2	TTTCATGATTTACATCAATAGT
Proteus mirabilis HI4320	PMI2047	-218	3.1	TGTTTTTAATCTTTTCTAATAA
		-199	4.4	TAATGCGATCTAGTTATCAAAT
		-181	4.2	AAATTTGATGAATTTATCAAAT
		-158	3	ATTTGTTAAAATTTGCAGGTTT
		-138	3.9	TTTTATGATTTCGCTCAACAAC
		-95	3.1	CTTTGTTACTTTATTATCCATT
		-89	3.1	TACTTTATTATCCATTACATTA

Position: -54 Score: 3.4 Sequence: TAATGGGACAGGTTCCAGATAA Locus tag: SPA0156
	SPA0156	-54	3.4	TAATGGGACAGGTTCCAGATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceE
Ortholog function: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Escherichia coli str. K-12 substr. MG1655	b0114	-156	3.7	AAACGTTATATATGTCAAGTTG
		-131	3.8	AAATGTGCACAGTTTCATGATT
Salmonella typhimurium LT2	STM0152	-157	3.5	AAACATGATTTCTGTAAAATTG
		-120	3.2	TTTACTGATTTCAATCAAAACC
		-79	3	CTTATTAAGCTTTCTCACGAAA
		-54	3.4	TAATGGGACAGGTTCCAGATAA
Citrobacter koseri ATCC BAA-895	CKO_03259	-180	3.2	ATTTGTGCATAGTTACATCTTT
		-157	3.1	AAACGTTATTTCTGTAATCTTG
		-148	3.3	TTCTGTAATCTTGTTAAAATGT
		-120	3.2	TTTACTGATTTCAATCAAAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00118	-155	3.2	AAATGTTATTTCTGTAAGGTTG
		-118	3.2	TTTACTGATTTCAATCAAAACC
Enterobacter sp. 638	Ent638_0660	-120	3.2	TTTACTGATTTCAATCAAAACC
		-77	3.1	TATTGTATTTTCTGGCGAAAAT
		-68	3	TTTAGCGATACGAATATGAAAT
Erwinia amylovora ATCC 49946	EAM_0747	-198	3.3	TAAAGCGATCGGATTTAACAAT
Yersinia pestis KIM	y0767	-151	4.2	AAATGTGCTGGGTTTCATGATT
		-139	3.3	TTTCATGATTTCGGTCAAGGTC
		-74	3.4	TTTTGAAATTGGTATTACCAAT
Serratia proteamaculans 568	Spro_4011	-132	3.1	AAATGTGCGGGTAACCTGATTT
		-56	3.4	TTTTGAAATTGGTATTACCAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3789	-120	3.7	ATTGGTGATTTAGCTCAAGGTC
		-55	3.4	TTTTGAAATTGGTATTACCAAT
Edwardsiella tarda EIB202	ETAE_0659	-143	3.2	TTTCATGATTTACATCAATAGT
Proteus mirabilis HI4320	PMI2046	-218	3.1	TGTTTTTAATCTTTTCTAATAA
		-199	4.4	TAATGCGATCTAGTTATCAAAT
		-181	4.2	AAATTTGATGAATTTATCAAAT
		-158	3	ATTTGTTAAAATTTGCAGGTTT
		-138	3.9	TTTTATGATTTCGCTCAACAAC
		-95	3.1	CTTTGTTACTTTATTATCCATT
		-89	3.1	TACTTTATTATCCATTACATTA

Position: -1 Score: 3.4 Sequence: AATGGCTATCGAAATCAAAGTA Locus tag: SPA0157
	SPA0157	-1	3.4	AATGGCTATCGAAATCAAAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceF
Ortholog function: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Escherichia coli str. K-12 substr. MG1655	b0115	-156	3.7	AAACGTTATATATGTCAAGTTG
		-131	3.8	AAATGTGCACAGTTTCATGATT
Salmonella typhimurium LT2	STM0153	-157	3.5	AAACATGATTTCTGTAAAATTG
		-120	3.2	TTTACTGATTTCAATCAAAACC
		-79	3	CTTATTAAGCTTTCTCACGAAA
		-54	3.4	TAATGGGACAGGTTCCAGATAA
Citrobacter koseri ATCC BAA-895	CKO_03258	-180	3.2	ATTTGTGCATAGTTACATCTTT
		-157	3.1	AAACGTTATTTCTGTAATCTTG
		-148	3.3	TTCTGTAATCTTGTTAAAATGT
		-120	3.2	TTTACTGATTTCAATCAAAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00119	-155	3.2	AAATGTTATTTCTGTAAGGTTG
		-118	3.2	TTTACTGATTTCAATCAAAACC
Enterobacter sp. 638	Ent638_0661	-120	3.2	TTTACTGATTTCAATCAAAACC
		-77	3.1	TATTGTATTTTCTGGCGAAAAT
		-68	3	TTTAGCGATACGAATATGAAAT
Erwinia amylovora ATCC 49946	EAM_0748	-198	3.3	TAAAGCGATCGGATTTAACAAT
Yersinia pestis KIM	y0768	-151	4.2	AAATGTGCTGGGTTTCATGATT
		-139	3.3	TTTCATGATTTCGGTCAAGGTC
		-74	3.4	TTTTGAAATTGGTATTACCAAT
Serratia proteamaculans 568	Spro_4010	-132	3.1	AAATGTGCGGGTAACCTGATTT
		-56	3.4	TTTTGAAATTGGTATTACCAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3788	-120	3.7	ATTGGTGATTTAGCTCAAGGTC
		-55	3.4	TTTTGAAATTGGTATTACCAAT
Edwardsiella tarda EIB202	ETAE_0660	-143	3.2	TTTCATGATTTACATCAATAGT
Proteus mirabilis HI4320	PMI2045	-218	3.1	TGTTTTTAATCTTTTCTAATAA
		-199	4.4	TAATGCGATCTAGTTATCAAAT
		-181	4.2	AAATTTGATGAATTTATCAAAT
		-158	3	ATTTGTTAAAATTTGCAGGTTT
		-138	3.9	TTTTATGATTTCGCTCAACAAC
		-95	3.1	CTTTGTTACTTTATTATCCATT
		-89	3.1	TACTTTATTATCCATTACATTA

Position: -153 Score: 4.1 Sequence: TTTTGTGAGGTTATTAGCGAAA Position: -125 Score: 3.3 Sequence: ATTCGTGATCCGTTTGTTGTTT Locus tag: SPA0158
	SPA0158	-153	4.1	TTTTGTGAGGTTATTAGCGAAA
		-125	3.3	ATTCGTGATCCGTTTGTTGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lpdA
Ortholog function: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Escherichia coli str. K-12 substr. MG1655	b0116	-224	3.3	AATTGTTAACAATTTTGTAAAA
Salmonella typhimurium LT2	STM0154	-153	3.5	GTTTGTGAGGTTATTAGCGAAA
Citrobacter koseri ATCC BAA-895	CKO_03256	-95	3.3	AATTGTTAACAATTTTGTAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00120	-105	3.3	AATTGTTAACAATTTTGTAAAA
Yersinia pestis KIM	y0769	-253	3.3	ATTGGTGATCTTGTTATTACTG
Serratia proteamaculans 568	Spro_4009	-246	3.6	TATGGTGATGTAATGAAAAAAG
Proteus mirabilis HI4320	PMI2044	-133	3.4	GGTTGTGAGATCTGTCATGTTA
Photorhabdus luminescens subsp. laumondii TTO1	plu3621	-131	3.9	TGTTGCGAGTTCTGTCACGTTA

Position: -157 Score: 3.9 Sequence: TTTTGTAAACAGATTAACACTT Locus tag: SPA0162
	SPA0162	-157	3.9	TTTTGTAAACAGATTAACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acnB
Ortholog function: Aconitate hydratase 2 (EC 4.2.1.3)
Escherichia coli str. K-12 substr. MG1655	b0118	-144	3.5	TTTTGTAAACAGATTAACACCT
Salmonella typhimurium LT2	STM0158	-157	3.9	TTTTGTAAACAGATTAACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00124	-260	3.5	TTTTGTAAACAGATTAACACCT
Yersinia pestis KIM	y0771	-276	4.3	TTATGTGAACGAATTAACACTG
Serratia proteamaculans 568	Spro_4008	-192	3.9	TTATGTGAACGAATTAACAACC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3778	-163	4.3	TTATGTGAACGAATTAACAATC
Proteus mirabilis HI4320	PMI2040	-177	4.5	TTATGTGAACGAATTAACATAG
Photorhabdus luminescens subsp. laumondii TTO1	plu3619	-261	3.6	TTCTGTGAACGAATTAACATCG

Position: -147 Score: 5.3 Sequence: ATGTGTGATCGTCATCACAAAA Locus tag: SPA0173
	SPA0173	-147	5.3	ATGTGTGATCGTCATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hpt
Ortholog function: hypoxanthine phosphoribosyltransferase
Escherichia coli str. K-12 substr. MG1655	b0125	-147	5.3	ATGTGTGATCGTCATCACAATT
Salmonella typhimurium LT2	STM0170	-147	5.3	ATGTGTGATCGTCATCACAAAA
Citrobacter koseri ATCC BAA-895	CKO_03242	-135	5.3	AAGTGTGATCGTCATCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00133	-134	5.4	AAGTGTGATCGGAATCACAAAT
Enterobacter sp. 638	Ent638_0673	-180	3.6	AATTTTGATAGCAATTAATTAT
		-148	5.4	AAGTGTGATCGGAATCACAAAT
Proteus mirabilis HI4320	PMI0160	-154	3.6	TACTGTAATAAGTAACAAAATT
Photorhabdus luminescens subsp. laumondii TTO1	plu0860	-144	4	AATTCTGATATGCTTTGCAAAA

Position: -128 Score: 4.2 Sequence: TTTATTGATTTAAATCAAAGAA Locus tag: SPA0272
	SPA0272	-128	4.2	TTTATTGATTTAAATCAAAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: grcA
Ortholog function: Autonomous glycyl radical cofactor
Citrobacter koseri ATCC BAA-895	CKO_00205	-127	4	TTTGTTGATTTAAATCAAAGAA

Position: -106 Score: 3.9 Sequence: TTCTGTGACGTTCCTCAGCATT Locus tag: SPA0313
	SPA0313	-106	3.9	TTCTGTGACGTTCCTCAGCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: csiE
Ortholog function: Stationary phase inducible protein CsiE
Escherichia coli str. K-12 substr. MG1655	b2535	-104	3.5	TTCTGTGACGCTTGCCAACATT
Salmonella typhimurium LT2	STM2553	-106	3.8	TTCTGTGACACTCCTCAGCATT
Citrobacter koseri ATCC BAA-895	CKO_00245	-105	3.4	TTCTGTGATGCTCGCCAGCATT
		-42	3.6	TTTAGCTATCCTTATCAAACAA
Erwinia amylovora ATCC 49946	EAM_2496	-103	3.4	TTTTGTGACCTGCCTTAAAAGC
Yersinia pestis KIM	y1328	-161	4.1	TAATGTAACACATAGCGCATTA
Serratia proteamaculans 568	Spro_3633	-276	3.4	AAAGGTGGTGTTCATATCAATA

Position: -282 Score: 4 Sequence: TTATGTGACTTACTGCAATATT Locus tag: SPA0387
	SPA0387	-282	4	TTATGTGACTTACTGCAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yffB
Ortholog function: FIG138056: a glutathione-dependent thiol reductase
Escherichia coli str. K-12 substr. MG1655	b2471	-246	3.8	GTATGTGATACACAGCAACATT
Salmonella typhimurium LT2	STM2482	-282	4	TTATGTGACTTACTGCAATATT
Citrobacter koseri ATCC BAA-895	CKO_00317	-276	4	TTATGTGACTTACTGCAATATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02804	-218	4	TAATGTGACGTAGAGCAACCTC
		-179	4	TAATGTTAAAGCCCTCACATCA
Enterobacter sp. 638	Ent638_2966	-254	4	TTATGTGACCAATAGCAATATT
		-77	3.6	ATATGTTATGTTTTGCCAAATA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1292	-138	3.7	TTCTGCAACGCAGTTCACAGTA

Position: -11 Score: 3.6 Sequence: TGGAGTGATTTATGTCCCGTAA Locus tag: SPA0395
	SPA0395	-11	3.6	TGGAGTGATTTATGTCCCGTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tktB
Ortholog function: Transketolase (EC 2.2.1.1)
Escherichia coli str. K-12 substr. MG1655	b2465	-83	4	TTTTTTGATGCGTTTAGCGAAA
		-53	3.9	AAGTGTGAATTAACGCACTCAT
Salmonella typhimurium LT2	STM2474	-53	3.7	AAGTGTGAATCAACACACTCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02799	-80	3.7	TTTGGTTATGTACCTCATCAAT
Enterobacter sp. 638	Ent638_2960	-152	3.6	ATTTGTTATCAATTTATAACAA
		-83	3.9	TTTTGTTAAGTACGTCATGTAT

Position: -53 Score: 3.7 Sequence: AAGTGTGAATCAACACACTCAT Locus tag: SPA0396
	SPA0396	-53	3.7	AAGTGTGAATCAACACACTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: talA
Ortholog function: Transaldolase (EC 2.2.1.2)
Escherichia coli str. K-12 substr. MG1655	b2464	-83	4	TTTTTTGATGCGTTTAGCGAAA
		-53	3.9	AAGTGTGAATTAACGCACTCAT
Salmonella typhimurium LT2	STM2473	-53	3.7	AAGTGTGAATCAACACACTCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02798	-80	3.7	TTTGGTTATGTACCTCATCAAT
Enterobacter sp. 638	Ent638_2959	-152	3.6	ATTTGTTATCAATTTATAACAA
		-83	3.9	TTTTGTTAAGTACGTCATGTAT

Position: -240 Score: 3.8 Sequence: ATGAGTGTGTTGATTCACACTT Locus tag: SPA0397
	SPA0397	-240	3.8	ATGAGTGTGTTGATTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: maeB
Ortholog function: malic enzyme
Escherichia coli str. K-12 substr. MG1655	b2463	-257	3.9	ATGAGTGCGTTAATTCACACTT
Salmonella typhimurium LT2	STM2472	-240	3.8	ATGAGTGTGTTGATTCACACTT
Enterobacter sp. 638	Ent638_2958	-231	4.1	ATACATGACGTACTTAACAAAA
Yersinia pestis KIM	y1449	-92	3.7	GATTGTGATAAATCACTCACTA
Serratia proteamaculans 568	Spro_3472	-209	3.6	CTTTGTTATCAAACTCACTATC
		-90	4.1	GTTTGTGACGTTTCTCTCACTA
Photorhabdus luminescens subsp. laumondii TTO1	plu2719	-74	4	TGTTATGATTTGACACACAGTA

Position: -103 Score: 4.6 Sequence: CTTAGTGATCTACCTCACCTTT Locus tag: SPA0398
	SPA0398	-103	4.6	CTTAGTGATCTACCTCACCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: b2462
Ortholog function: putative carboxysome structural protein, ethanol utilization
Escherichia coli str. K-12 substr. MG1655	b2462	-103	4.6	CTTAGTGATCTACCTCACCTTT
Salmonella typhimurium LT2	STM2470	-168	3.8	AAATGTGATGCACCACGATATT
		-103	4.6	CTTAGTGATCTACCTCACCTTT
Citrobacter koseri ATCC BAA-895	CKO_00333	-103	4.6	CTTAGTGATCTACTTCACCTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02796	-102	4.3	CTGAGTGATCCACTTCACCTTT

Position: -337 Score: 4.2 Sequence: TTTTGTGGCCTGCTTCAAACTT Position: -209 Score: 4 Sequence: TTTTATGATTTGGTTCAACTCT Locus tag: SPA0434
	SPA0434	-337	4.2	TTTTGTGGCCTGCTTCAAACTT
		-209	4	TTTTATGATTTGGTTCAACTCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ptsH
Ortholog function: PTS system phosphocarrier protein
Escherichia coli str. K-12 substr. MG1655	b2415	-209	3.9	TTTTATGATTTGGTTCAATTCT
Salmonella typhimurium LT2	STM2431	-209	4.4	TTTTATGATTTGGTTCAAATCT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02762	-206	4	TTTTATGATTTGGTTCAAGTCT
Enterobacter sp. 638	Ent638_2943	-271	4.4	TTTTGTGGTCCACTTCAAACTT
		-144	4	TTTTATGATTTGGTTCAAGTCT
Serratia proteamaculans 568	Spro_3448	-149	3.6	TTTTTTGATCTGAAGTGCCAAA
Proteus mirabilis HI4320	PMI1828	-275	4.4	TTTTGTGGTAGAGATCAAACTT
		-115	3.6	TAACGTAACATGGCTTATATTA

Position: -37 Score: 3.6 Sequence: AAAATTGATTTATTGCATCTAT Locus tag: SPA0441
	SPA0441	-37	3.6	AAAATTGATTTATTGCATCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfeR
Ortholog function: transcriptional regulator, LysR family
Salmonella typhimurium LT2	STM2424	-37	3.6	AAAATTGATTTATTGCATCTAT
Citrobacter koseri ATCC BAA-895	CKO_00385	-37	3.6	AAAATTGATTTATTGCATCTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02755	-112	3.6	AAAATTGATTTATTGCATCTAT
Erwinia amylovora ATCC 49946	EAM_2384	-33	3.7	TTAATTTATTGAATTCATATAT
Serratia proteamaculans 568	Spro_3441	-33	3.6	TTGATTTATTTAATTCATATAT

Position: -109 Score: 3.9 Sequence: AATATAGATCTTCATCACAGAA Locus tag: SPA0456
	SPA0456	-109	3.9	AATATAGATCTTCATCACAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfeO
Ortholog function: Chloride channel protein
Escherichia coli str. K-12 substr. MG1655	b2389	-109	4.1	AATATCGATCTGGGTCACACAA
Salmonella typhimurium LT2	STM2404	-109	3.9	AATATAGATCTTCATCACAGAA
Citrobacter koseri ATCC BAA-895	CKO_00411	-134	4.4	AATATCGATCTGCATCACATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02739	-192	4.3	TTTAGCGACACAGGTCACATTT
Enterobacter sp. 638	Ent638_2922	-111	3.7	ATAATCGATCTTCGTCACAGAA
Serratia proteamaculans 568	Spro_3408	-249	4.7	ATTAGCGATCCGGATCACAAAA

Position: -116 Score: 3.9 Sequence: TTCTGTGATGAAGATCTATATT Locus tag: SPA0457
	SPA0457	-116	3.9	TTCTGTGATGAAGATCTATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glk
Ortholog function: glucokinase
Escherichia coli str. K-12 substr. MG1655	b2388	-116	4.1	TTGTGTGACCCAGATCGATATT
Salmonella typhimurium LT2	STM2403	-116	3.9	TTCTGTGATGAAGATCTATATT
Citrobacter koseri ATCC BAA-895	CKO_00412	-116	4.5	TTATGTGATGCAGATCGATATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02738	-117	4.4	AAATGTGACCTGTGTCGCTAAA
Enterobacter sp. 638	Ent638_2921	-116	3.8	TTCTGTGACGAAGATCGATTAT
Yersinia pestis KIM	y1505	-113	4.7	TTATGAGATGTCAGTCACAAAA
Serratia proteamaculans 568	Spro_3407	-116	4.8	TTTTGTGATCCGGATCGCTAAT

Position: -262 Score: 4.8 Sequence: TTAAGTGACCGAAATCACACTT Position: -240 Score: 3.9 Sequence: TAAAATGATCTAAAACAAAAAT Locus tag: SPA0473
	SPA0473	-262	4.8	TTAAGTGACCGAAATCACACTT
		-240	3.9	TAAAATGATCTAAAACAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadL
Ortholog function: Long-chain fatty acid transport protein
Escherichia coli str. K-12 substr. MG1655	b2344	-269	4.8	ATAAGTGACCGAAATCACACTT
		-247	3.9	AAAAATGATCTAAAACAAAATT
Salmonella typhimurium LT2	STM2391	-262	4.8	TTAAGTGACCGAAATCACACTT
		-240	3.9	AAAAATGATCTAAAACAAAAAT
Citrobacter koseri ATCC BAA-895	CKO_00446	-263	4.8	ATAAGTGACCGAAATCACACTT
		-241	3.9	AAAAATGATCTAAAACAAAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02726	-264	4.7	TTAAGTGACAGAAATCACACTT
		-242	3.9	AAAAATGATCTAAAACAAAAAT
Enterobacter sp. 638	Ent638_2884	-269	4.2	GTAAGTGACCGATATCACACTA
		-247	4	AAAAATGATCTAGCGCAAAAAT
		-214	3.7	ATGAGTGCGACGGCTCGCATTT
Erwinia amylovora ATCC 49946	EAM_2348	-194	3.9	TTTTGTTAAGCAGATCTCTTTT
Serratia proteamaculans 568	Spro_3381	-271	5.1	TTAAGTGATGGAAATCACAAAT
		-196	3.8	TTTTGTTAGCCAGATCTCTCTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3081	-332	3.8	AATTTTTATCTTCCTTATATTT
		-262	4.9	TTTAGTGATATCAGTCACATTA
Proteus mirabilis HI4320	PMI1810	-326	3.7	AAGTGTTAATTATCTATCATAA
		-186	4.2	TAATGTTAACTAAATCCCAAAT

Position: -143 Score: 4.6 Sequence: AATTGTGATAGCGCTATCAAAT Locus tag: SPA0519
	SPA0519	-143	4.6	AATTGTGATAGCGCTATCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: CKO_00488
Ortholog function: LacI-family transcriptional regulator
Salmonella typhimurium LT2	STM2345	-192	4	AGCTGCGATCGTTATCACAAAG
		-143	4.6	AATTGTGATAGCGCTATCAAAT
Citrobacter koseri ATCC BAA-895	CKO_00488	-192	4.6	ATCTGTGATCATATTCACAAAG
		-143	4.5	ATATGTGATAGCGCTATCAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01748	-155	4.2	AACTGTGATACACCTCCCAAAG
		-53	3.6	AGTTATAATGCGATTCGCAGAT
Enterobacter sp. 638	Ent638_2847	-178	4.1	AGCTGCGATCAAGATCACAAAG
		-129	4.6	AATTGTGATAGCGCTATCAAAT
Yersinia pestis KIM	y1619	-208	5.4	TAATGTGATCTGGATCTCAATT
		-158	4.6	ATTTGTGATAGCGCTATCATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3772	-246	4.5	TAATGTGATTAACATCCAAAAA
		-196	4	AACTGTGACCGGCTTAGCACAA
Edwardsiella tarda EIB202	ETAE_3025	-210	4.3	TTTCGTGATAGCGCTATCATTT
Proteus mirabilis HI4320	PMI1778	-139	4.2	AATTGTGATAGCGCTATTATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu1978	-195	3.8	GCTAGTGATATTAGTCACAAAT
		-145	4.7	AATTGTGATAGCGCTATCATTT

Position: -329 Score: 3.6 Sequence: ATTTATGATACGTGGCTAAAAA Locus tag: SPA0528
	SPA0528	-329	3.6	ATTTATGATACGTGGCTAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfbV
Ortholog function: putative cytoplasmic protein
Escherichia coli str. K-12 substr. MG1655	b2295	-263	3.6	ATTTATGATTAACATCATGCAC
		-54	4.1	AGTTGTGAATTTGCACAAATTT
Erwinia amylovora ATCC 49946	EAM_2300	-44	4	TTGTGTGTTTTTTTTAAAATTT
Edwardsiella tarda EIB202	ETAE_2396	-34	3.6	TTTTTTAACTCTTATCGAATAA
Proteus mirabilis HI4320	PMI1770	-290	3.7	ATTAATGATACGCATCATGCTT
		-260	3.6	AAACTTGATGCTAATTATAGTT

Position: -163 Score: 5 Sequence: TAATGTGAATTACAGCACATAT Locus tag: SPA0580
	SPA0580	-163	5	TAATGTGAATTACAGCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpA
Ortholog function: sn-glycerol-3-phosphate dehydrogenase subunit A
Escherichia coli str. K-12 substr. MG1655	b2241	-165	4.6	AAATGTGAATTGCCGCACACAT
Salmonella typhimurium LT2	STM2284	-163	5	TAATGTGAATTACAGCACATAT
Citrobacter koseri ATCC BAA-895	CKO_00536	-163	4.7	TAATGTGAATTACAGCACAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02647	-165	4.3	TACTGTGAAACATCGCACAATT
		-115	3.8	ATGTGAGCACGAAATCACATAA
Enterobacter sp. 638	Ent638_2805	-163	4.1	TACTGTGAATCAACGCACAGAT
Yersinia pestis KIM	y0404	-231	3.6	AATTGTTACCTATTTTATGAAA
		-155	4.4	ACCTGTGATTTTGATCACAATC
Serratia proteamaculans 568	Spro_0200	-231	3.6	CGCTGTGATGGATGGCGCAATT
		-138	4.9	AATCGTGATTATGATCACATTC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4165	-148	5.1	TTTAGTGATGCAAATCACACTT
Edwardsiella tarda EIB202	ETAE_3115	-247	4	TACTGTGAGAGATCGCTCATAT
		-142	4.8	TAGAGTGATTTTGATCACATTG
Proteus mirabilis HI4320	PMI3592	-262	3.7	TACTGTGAAGTAATACTCAGTT
		-170	5.5	ATTTGTGATTAGTATCACATAT

Position: -220 Score: 3.6 Sequence: ATGTTTGATTTCGCGCATAATC Position: -180 Score: 4.2 Sequence: AAACGTGATTTCGTGCGCCTTT Position: -131 Score: 5.2 Sequence: ATATGTGCTGTAATTCACATTA Locus tag: SPA0581
	SPA0581	-220	3.6	ATGTTTGATTTCGCGCATAATC
		-180	4.2	AAACGTGATTTCGTGCGCCTTT
		-131	5.2	ATATGTGCTGTAATTCACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpT
Ortholog function: glycerol-3-phosphate transporter
Escherichia coli str. K-12 substr. MG1655	b2240	-219	3.7	TTGTTTGATTTCGCGCATATTC
		-179	3.6	AAACGTGATTTCATGCGTCATT
		-129	4.6	ATGTGTGCGGCAATTCACATTT
Salmonella typhimurium LT2	STM2283	-220	3.6	ATGTTTGATTTCGCGCATAATC
		-180	4.2	AAACGTGATTTCGTGCGCCTTT
		-131	5.2	ATATGTGCTGTAATTCACATTA
Citrobacter koseri ATCC BAA-895	CKO_00537	-221	3.6	TTGTTTGATTTCGCGCATAATC
		-181	4	AAACGTGATTTCGTGCGCTTTT
		-132	4.8	ATCTGTGCTGTAATTCACATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02646	-218	3.8	TTGTTTGATTTCGAGCATATTC
		-178	4.6	TTATGTGATTTCGTGCTCACAT
		-128	4.5	AATTGTGCGATGTTTCACAGTA
Enterobacter sp. 638	Ent638_2804	-201	3.6	TTGTTTGATTTCGAACATAATC
		-161	3.8	AAGCGTGATCTCATGCGCTTAT
		-111	4	ATCTGTGCGTTGATTCACAGTA
Erwinia amylovora ATCC 49946	EAM_0195	-240	3.7	AAACGCGATGCGGTTAACGATG
		-147	3.7	ATTTGTGCCTCTCTTCACGGTC
Serratia proteamaculans 568	Spro_0199	-249	4.5	GAATGTGATCATAATCACGATT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4166	-253	3.7	ATGTTTGATAAAGAGCAAAAAC
		-193	4.9	AAGTGTGATTTGCATCACTAAA
Edwardsiella tarda EIB202	ETAE_3116	-200	3.7	ATATGAGCGATCTCTCACAGTA
Proteus mirabilis HI4320	PMI3591	-291	3.6	ATGTTTGATAATGAGCAAAAAC
		-232	5.4	ATATGTGATACTAATCACAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu4119	-250	4.9	TATTGTGACAATTGTCACAATT

Position: -200 Score: 3.6 Sequence: AAGGTTGAGTTAGATCGCAGAA Locus tag: SPA0631
	SPA0631	-200	3.6	AAGGTTGAGTTAGATCGCAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yejG
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b2181	-158	3.7	AAACGTGACCACGCCCGCAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02614	-204	3.8	AAAGTTGTTTTGGATCACAGAA
Erwinia amylovora ATCC 49946	EAM_2233	-177	3.6	AAATGAGCATTACTTCTCAAAA
Yersinia pestis KIM	y2914	-238	4.4	AAATGGGATCTGAATCCCAAAT
Serratia proteamaculans 568	Spro_3250	-214	4.2	AAATGCGAGCTGAGTCGCAAAA
		-121	4.1	GCTTGTGATGTTTTTTACATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2740	-178	4	ATTCGTGATCAGTTTGGCATTA
		-101	3.8	TGTTGTTTTTTTGTTCACGAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu2865	-185	4.1	AAATGAGAGATTGATCTCACTT
		-183	3.6	ATGAGAGATTGATCTCACTTTT
		-141	3.8	TAATGTAATACTATAAACACAA

Position: -128 Score: 3.7 Sequence: ATTTGTGCGTTCCGCCACAGAT Locus tag: SPA0637
	SPA0637	-128	3.7	ATTTGTGCGTTCCGCCACAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: spr
Ortholog function: predicted peptidase, outer membrane lipoprotein
Escherichia coli str. K-12 substr. MG1655	b2175	-130	4.1	TTTTGTGCGTTAGTCCACAGAT
Salmonella typhimurium LT2	STM2214	-128	3.7	ATTTGTGCGTTCCGCCACAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02608	-292	3.6	TAGGGTAATCTCGTTCTCGTTT
		-234	4.2	AATTGTGCGTGACTGCACAAAT
Enterobacter sp. 638	Ent638_2771	-250	3.6	AATCGCTTTGTCTATCACAATT
Yersinia pestis KIM	y2908	-128	3.7	GAATGTGCGTTCATGCACATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2735	-159	3.9	TAATGTGCATTCTGGCACACTT
Edwardsiella tarda EIB202	ETAE_2298	-131	4.4	AAGTGTGTTCTGCTGCACAATT
Proteus mirabilis HI4320	PMI0831	-129	4.2	TTACGTGCTTTAGAGCACGTTT

Position: -213 Score: 4.6 Sequence: TTTTTTGAGGTAAAGCACATTT Locus tag: SPA0644
	SPA0644	-213	4.6	TTTTTTGAGGTAAAGCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: setB
Ortholog function: Sugar efflux transporter B
Escherichia coli str. K-12 substr. MG1655	b2170	-211	4.6	AAGTTTGATGTGCTGCACAATT
Salmonella typhimurium LT2	STM2207	-213	4.6	TTTTTTGAGGTGAAGCACATTT
Citrobacter koseri ATCC BAA-895	CKO_00612	-212	3.7	AATTTAGAGATAAAGCACACTT
Enterobacter sp. 638	Ent638_2764	-208	3.9	AATTTAGAAGTGCAGCACATTT

Position: -177 Score: 4.7 Sequence: AAATGTGCTTTACCTCAAAAAA Locus tag: SPA0645
	SPA0645	-177	4.7	AAATGTGCTTTACCTCAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fruB
Ortholog function: PTS system, fructose-specific IIA/FPr component
Escherichia coli str. K-12 substr. MG1655	b2169	-178	4.3	AATTGTGCAGCACATCAAACTT
Salmonella typhimurium LT2	STM2206	-177	4.6	AAATGTGCTTCACCTCAAAAAA
Citrobacter koseri ATCC BAA-895	CKO_00613	-50	4.1	AAGTGTGCTTTATCTCTAAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02600	-177	3.5	AAGTGTGCAGTACCTCTAAGTT
Enterobacter sp. 638	Ent638_2763	-178	4.3	AAATGTGCTGCACTTCTAAATT
Erwinia amylovora ATCC 49946	EAM_2223	-179	4.4	AAATGTGCTGGCTGTCAAAAAT
Yersinia pestis KIM	y2887	-178	4.1	AAATGTGCGGAATGTCAAAAAT
Serratia proteamaculans 568	Spro_3230	-177	4	AAGTGTGCGTGAGGTCAAAAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2729	-180	4.1	AAATGTGCGTGATGTCAAAATT
Edwardsiella tarda EIB202	ETAE_2303	-199	4.1	AAATGTGCTGAAGGTCTAAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu1992	-180	4.7	AAATGTGAGTAATCTCAAAAAA

Position: -101 Score: 4 Sequence: TTATGTGCGCTACCTCACGCAC Locus tag: SPA0658
	SPA0658	-101	4	TTATGTGCGCTACCTCACGCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: folE
Ortholog function: GTP cyclohydrolase I
Escherichia coli str. K-12 substr. MG1655	b2153	-101	3.8	TTATGTGCGCCGCCTCACGCAC
Salmonella typhimurium LT2	STM2193	-101	4	TTATGTGCGCTACCTCACGCAC
Citrobacter koseri ATCC BAA-895	CKO_00638	-98	3.8	TTATGTGCGCCGCCTCACGCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02591	-84	3.5	TTCTGTGCGCCACCTCACGCAC
Enterobacter sp. 638	Ent638_2753	-84	3.9	TTATGTGCGCCACCTCACGCAC
Serratia proteamaculans 568	Spro_1560	-121	4.3	AATCTTGACCGGGTTCACGTTA
Proteus mirabilis HI4320	PMI0639	-86	4.9	TAATGTGATTCAGCTCATCTAA

Position: -103 Score: 3.7 Sequence: CCCTGTGATGTTTCTCACGTAG Position: -38 Score: 3.3 Sequence: ATTTGTGAGCATTTTTGAACTC Locus tag: SPA0660
	SPA0660	-103	3.7	CCCTGTGATGTTTCTCACGTAG
		-38	3.3	ATTTGTGAGCATTTTTGAACTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: galS
Ortholog function: Mgl repressor and galactose ultrainduction factor GalS, HTH-type transcriptional regulator
Escherichia coli str. K-12 substr. MG1655	b2151	-146	3.5	GATAACGATCTGGATCACATTC
		-95	3.9	TGCTGTGACTCGATTCACGAAG
Salmonella typhimurium LT2	STM2191	-154	3.5	GATAACGATCTGGATCACATTC
		-103	3.5	CCCTGTGATGTTTCTCACGCAG
		-38	3.3	ATTTGTGAGCATTTTTGAACTC
Citrobacter koseri ATCC BAA-895	CKO_00640	-157	3.5	GATAACGATCTGGATCACATTC
		-106	3.4	CCCTGTGACCTTACTCACGTAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02589	-160	3.3	GATAACGATCTCGATCACAATC
		-109	3.4	CCGTGTGACCTCACTCACGCAG
		-33	3.6	TGACGTGCTGTAATTCTCTTAA
Enterobacter sp. 638	Ent638_2751	-160	3.4	GATAACGATCTGGATCACAATC
		-109	4.1	CTGTGTGAGCTTCTTCACGTAG
Erwinia amylovora ATCC 49946	EAM_2208	-110	3.4	GGCTGTGAGGTTTCTCACGTAG
Serratia proteamaculans 568	Spro_1562	-135	3.4	AATTGAGATCTGGCGCAGGTAG
		-84	3.5	TCCTGTGACGGGATTCACGCAG

Position: -121 Score: 4.9 Sequence: TTTTGTGAATTCTTTCACAGAA Locus tag: SPA0665
	SPA0665	-121	4.9	TTTTGTGAATTCTTTCACAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yeiT
Ortholog function: predicted oxidoreductase
Escherichia coli str. K-12 substr. MG1655	b2146	-112	4.8	ATTTGTGAATCTTTTCACAGTT
Salmonella typhimurium LT2	STM2186	-201	3.5	ATTTATTATCCCTTTAAAATTG
		-168	4.1	TATTATGATATAAGGAACAAAT
		-121	4.9	TTTTGTGAATTCTTTCACAGAA

Position: -78 Score: 4.8 Sequence: CAATGAGATTTAGATCACATAT Locus tag: SPA0668
	SPA0668	-78	4.8	CAATGAGATTTAGATCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cdd
Ortholog function: cytidine deaminase
Escherichia coli str. K-12 substr. MG1655	b2143	-128	4.3	ATTTGCGATGCGTCGCGCATTT
		-78	5.1	TAATGAGATTCAGATCACATAT
Salmonella typhimurium LT2	STM2183	-128	4.2	ATTTGCGATACGTCGCGCATTT
		-78	4.8	CAATGAGATTTAGATCACATAT
Citrobacter koseri ATCC BAA-895	CKO_00646	-128	4.3	ATTTGCGATGCGTCGCGCATTT
		-78	4.8	CAATGAGATTTGGATCACATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02584	-78	4.4	GAATGAGATATTCATCACATAT
Enterobacter sp. 638	Ent638_2746	-127	4.2	ATTTGCGATGCGTCGCGCAATT
		-77	4.9	TAATGAGAACTGGATCACATAT
Erwinia amylovora ATCC 49946	EAM_2202	-124	3.9	ACTTGCGATAAGTCTCTCATTT
		-104	4.1	TTTGGTGATGCATTTCATTTAT
		-74	4.7	TAGAGCGATTTAGATCACATAT
Yersinia pestis KIM	y2657	-75	5	TAATGAGATATAAATCACAATT
Serratia proteamaculans 568	Spro_1568	-127	4.1	ACTTGCGATACATCTCGCAATT
		-77	4.5	TAAAGAGATTTACATCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2830	-130	4.6	AATTGAGATACATCTCGCATTT
		-79	4.5	TAAAGAGATTCCGATCACAATT
Edwardsiella tarda EIB202	ETAE_1162	-76	4.9	AAAAGTGATTATTATCACAAAT
Proteus mirabilis HI4320	PMI0643	-132	4.4	ATTTGAGATGTATCTCCCAATT
		-82	5.1	AAATATGATTTTAATCACATAT
Photorhabdus luminescens subsp. laumondii TTO1	plu1547	-75	4.7	CTATATGATATTTATCACATTA

Position: -68 Score: 4.6 Sequence: TGATGTGATCGGTAGCACGTTT Locus tag: SPA0670
	SPA0670	-68	4.6	TGATGTGATCGGTAGCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yohJ
Ortholog function: LrgA family protein
Escherichia coli str. K-12 substr. MG1655	b2141	-68	4.9	TAATGTGATCGGTAGCACGTTT
Salmonella typhimurium LT2	STM2181	-68	4.6	TGATGTGATCGGTAGCACGTTT
Citrobacter koseri ATCC BAA-895	CKO_00648	-68	4.6	TGATGTGATCGGTAGCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02582	-68	5	TGATGTGATCGGTAGCACATTT
Enterobacter sp. 638	Ent638_2744	-68	4.7	TGATGTGATCCGTAGCACGTTT
Yersinia pestis KIM	y2654	-32	4.7	TAGTGTGATGGGTAGCACAGAA
Serratia proteamaculans 568	Spro_1570	-62	4.3	ATTTGTGGCGGAGGTCACAGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2828	-69	4.5	ATTCGTGATCTGTGGCACGTAA
Edwardsiella tarda EIB202	ETAE_1164	-68	4.9	TGATGTGATCAGTAGCACATTT
Proteus mirabilis HI4320	PMI0645	-71	5.2	TATTGTGATCCATAGCACACTT

Position: -42 Score: 4.5 Sequence: AATTGTGACAATTGTCATATTA Locus tag: SPA0747
	SPA0747	-42	4.5	AATTGTGACAATTGTCATATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yegH
Ortholog function: putative membrane protein
Escherichia coli str. K-12 substr. MG1655	b2063	-43	4.6	AATTGTGACATTTGTCATACAA
Salmonella typhimurium LT2	STM2119	-42	4.5	AATTGTGACAATTGTCATATTA
Citrobacter koseri ATCC BAA-895	CKO_00719	-42	4.5	AATTGTGACAACTGTCATATAA
Enterobacter sp. 638	Ent638_2677	-42	4.4	AAGTGTGACAAATGTCATATAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1559	-193	3.9	ATTTGTTAATGTGATCACATGT

Position: -328 Score: 3.4 Sequence: ATATGTGCTGGATGGAAAAGAT Position: -102 Score: 3.9 Sequence: GAGTGCGAGGTTGCTCACAAAA Locus tag: SPA0810
	SPA0810	-328	3.4	ATATGTGCTGGATGGAAAAGAT
		-102	3.9	GAGTGCGAGGTTGCTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sbmC
Ortholog function: DNA gyrase inhibitor
Escherichia coli str. K-12 substr. MG1655	b2009	-93	3.5	GAGTGCGAGTCTGCTCGCATAA
Salmonella typhimurium LT2	STM2061	-102	4.1	GATTGCGAGGTTGCTCACAAAA
Citrobacter koseri ATCC BAA-895	CKO_00775	-219	3.5	GAGTGCGAGTCTGCTCACATAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02467	-88	3.6	CTCTGTGAATTCGCGCACATAC
Enterobacter sp. 638	Ent638_2577	-97	3.6	TCGTGCGAGTCTGCTCGCATAA
		-65	3.6	ATATTTGCTGCACATAAAGAAT

Position: -201 Score: 4 Sequence: TGTTTTTACTTCACTCACATAA Locus tag: SPA0888
	SPA0888	-201	4	TGTTTTTACTTCACTCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rcsA
Ortholog function: Colanic acid capsular biosynthesis activation accesory protein RcsA, co-regulator with RcsB
Escherichia coli str. K-12 substr. MG1655	b1951	-201	4	TGTTTTAAGCTCACTCACATAT
Salmonella typhimurium LT2	STM1982	-201	4	TGTTTTTACTTCACTCACATAA
Citrobacter koseri ATCC BAA-895	CKO_00992	-200	4.1	TGTTTTTACCTTACTCACATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02421	-195	3.7	TGTTTTTAATTCGGTCACACTA
Enterobacter sp. 638	Ent638_2542	-206	4.3	TGTTTTTATGCCCTTCACAATA

Position: -285 Score: 5.9 Sequence: TTATGTGATCTACATCACATAT Locus tag: SPA0943
	SPA0943	-285	5.9	TTATGTGATCTACATCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: flhD
Ortholog function: DNA-binding transcriptional dual regulator with FlhC
Salmonella typhimurium LT2	STM1925	-285	5.8	ATATGTGATCTGCATCACATAT

Position: -276 Score: 3.7 Sequence: AATTGTTATTTAATTTAACGTT Locus tag: SPA1039
	SPA1039	-276	3.7	AATTGTTATTTAATTTAACGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: b1821
Ortholog function: hypothetical protein
Salmonella typhimurium LT2	STM1834	-276	3.7	AATTGTTATTTAATTTAACGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2389	-267	3.8	TAGTGTTGTTTGCATCATAAAT
Proteus mirabilis HI4320	PMI1608	-272	3.8	AATTATTATCAATATCATCTTT
		-237	3.9	TAATATGTTGCCTTTCATAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu2701	-281	3.9	TATTGTGCTATCTTTTAAATTG
		-179	3.7	AAACGTGGTGCGGGTAACCTTA

Position: -131 Score: 3.7 Sequence: AATAGTGACGCGCTTCGCAACC Locus tag: SPA1055
	SPA1055	-131	3.7	AATAGTGACGCGCTTCGCAACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadD
Ortholog function: long-chain-fatty-acid--CoA ligase
Escherichia coli str. K-12 substr. MG1655	b1805	-131	3.7	AATAGTGACGCGCTTCGCAACC
Salmonella typhimurium LT2	STM1818	-131	3.7	AATAGTGACGCGCTTCGCAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02322	-97	3.7	AATAGTGACGCGCTTCGCAACC
Erwinia amylovora ATCC 49946	EAM_1956	-130	3.9	TTTAGTGATGCGCTTCGCAACC
Yersinia pestis KIM	y2236	-80	4.1	AATAGTGATGTATATCTCAACC
Serratia proteamaculans 568	Spro_2760	-99	3.9	ATTAGTGACGTACATCGCAACC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2372	-132	3.8	ATTAGTGATCGTTCTCGCAACC
		-75	3.7	TAAAATAATGTTAATAACAATA
Proteus mirabilis HI4320	PMI1166	-121	4.4	TTTAGTGATACACTTCGCATCT
Photorhabdus luminescens subsp. laumondii TTO1	plu2134	-288	3.8	AAATGCTATCTTAAGCAAAAAA
		-137	4	ATTAGTGATGTGTATCTCAACC

Position: -21 Score: 3.8 Sequence: CTGTGTAATGGAAATCTCACTA Locus tag: SPA1068
	SPA1068	-21	3.8	CTGTGTAATGGAAATCTCACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadR
Ortholog function: fatty acid metabolism regulator
Escherichia coli str. K-12 substr. MG1655	b1187	-21	3.9	CTGTGTTATGGAAATCTCACTA
Salmonella typhimurium LT2	STM1805	-21	3.8	CTGTGTAATGGAAATCTCACTA
Enterobacter sp. 638	Ent638_2365	-21	3.8	CTGTGTAATGGAAATCTCACTA
Yersinia pestis KIM	y2177	-113	3.8	CTTTATGACTGCTTTCACCATT
Proteus mirabilis HI4320	PMI1510	-111	4.4	TTTTATGATGCCATTCACTATT
		-84	3.8	ATGGTTGAGCTATATCAAAATT

Position: -237 Score: 4.9 Sequence: TATGGTGACGTGCTTCACATAT Locus tag: SPA1069
	SPA1069	-237	4.9	TATGGTGACGTGCTTCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycgB
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b1188	-235	4.4	TATGGTGAGCTGGCTCACATCT
Salmonella typhimurium LT2	STM1804.S	-243	4.9	TATGGTGACGTGCTTCACATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02310	-174	4	TATGGTGACTTAACTCACAGCA
Enterobacter sp. 638	Ent638_2364	-236	4.2	TATGGTGACTTACCTCACACCT

Position: -107 Score: 4.6 Sequence: ATATGTGAAGCACGTCACCATA Locus tag: SPA1070
	SPA1070	-107	4.6	ATATGTGAAGCACGTCACCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dadA
Ortholog function: D-amino acid dehydrogenase small subunit
Escherichia coli str. K-12 substr. MG1655	b1189	-116	4.7	AGATGTGAGCCAGCTCACCATA
Salmonella typhimurium LT2	STM1803	-107	4.6	ATATGTGAAGCACGTCACCATA
Citrobacter koseri ATCC BAA-895	CKO_01193	-107	4.5	AGATGTGAGGTGCGTCACCATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02309	-106	4.1	TGCTGTGAGTTAAGTCACCATA
Enterobacter sp. 638	Ent638_2363	-107	4.3	AGGTGTGAGGTAAGTCACCATA
Serratia proteamaculans 568	Spro_2746	-113	4.6	AATTGTGAATGTTGTCACGTTT
Proteus mirabilis HI4320	PMI1509	-121	4.7	AAATGTGATTTGACTCTAAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu2561	-114	5.4	AATTGTGATCTAAATCATAAAT

Position: -105 Score: 4.4 Sequence: ATTTGTGATCGCACCCGCACTT Locus tag: SPA1091
	SPA1091	-105	4.4	ATTTGTGATCGCACCCGCACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ychH
Ortholog function: membrane protein
Escherichia coli str. K-12 substr. MG1655	b1205	-105	4.5	AATTGTGATCACGCCCGCACAT
Salmonella typhimurium LT2	STM1782	-105	4.4	ATTTGTGATCGCACCCGCACTT
Citrobacter koseri ATCC BAA-895	CKO_01260	-104	4.1	AATTGTGATCGCCCACGCACTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02241	-100	4.1	TAATGTGATCGTGGACGCACTC
Enterobacter sp. 638	Ent638_2343	-119	3.7	TGTTGTGACGAGAGTCATTAAT
		-101	4	TAATGTGATCATTCACGCAACT
Erwinia amylovora ATCC 49946	EAM_1581	-97	3.9	AAATGTGATCGCTGACTCATCA
Yersinia pestis KIM	y2296	-145	3.9	AGTTGTGATCGCTACCGCAACA
Serratia proteamaculans 568	Spro_1985	-117	4.2	ATTTGTGATCGCCTACGCAATC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2185	-275	3.6	TAGCGTGATTATGAGAACGCTA
		-117	3.8	ATCTGTGATCCCTCCCGCAATC
Photorhabdus luminescens subsp. laumondii TTO1	plu2065	-189	4.1	AGTTGTGATCGTGTCCGCAATG

Position: -242 Score: 4.9 Sequence: AATCTTGATTTAGATCACACAA Locus tag: SPA1129
	SPA1129	-242	4.9	AATCTTGATTTAGATCACACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Escherichia coli str. K-12 substr. MG1655	b1241	-241	5	AAATTTGATTTGGATCACGTAA
Salmonella typhimurium LT2	STM1749	-242	4.9	AATCTTGATTTAGATCACACAA
Citrobacter koseri ATCC BAA-895	CKO_01318	-242	4.9	AAATTTGATCTGGATCACGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02199	-237	4.7	ATACTTGATCTAAATCACGTAA
Enterobacter sp. 638	Ent638_2304	-253	4.1	TAAATTGATTCAGATCATGTTT
Erwinia amylovora ATCC 49946	EAM_1900	-223	3.9	ATTGATGATCTGCATCATCTTT
Yersinia pestis KIM	y2023	-286	5.3	TTTTGTGATTTAAATCACGAAA
Serratia proteamaculans 568	Spro_2704	-278	5.1	TTTTATGATTTAAATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2326	-315	4.5	AAGTTCGATGTTGATCACAAAA
Edwardsiella tarda EIB202	ETAE_1508	-265	5	TTTCGTGACCTTAATCACAAAA
Proteus mirabilis HI4320	PMI1486	-246	5.4	TATTGTGATGTAGATCACTTTA
		-187	3.7	AAAGGAGATCTTTTTAAAATAT
Photorhabdus luminescens subsp. laumondii TTO1	plu2496	-237	3.7	TATTTTTATTAGATTAAAAATT
		-138	4.6	TTATGTGATTAAGATCAATATA

Position: -256 Score: 4.8 Sequence: TTGTGTGATCTAAATCAAGATT Locus tag: SPA1130
	SPA1130	-256	4.8	TTGTGTGATCTAAATCAAGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ychE
Ortholog function: putative channel protein
Escherichia coli str. K-12 substr. MG1655	b1242	-257	5.1	TTACGTGATCCAAATCAAATTT
Salmonella typhimurium LT2	STM1748	-256	4.8	TTGTGTGATCTAAATCAAGATT
Citrobacter koseri ATCC BAA-895	CKO_01319	-167	5	TTGCGTGATCCAGATCAAATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02198	-261	4.8	TTACGTGATTTAGATCAAGTAT
Enterobacter sp. 638	Ent638_2303	-256	4	AAACATGATCTGAATCAATTTA
Erwinia amylovora ATCC 49946	EAM_1899	-158	3.8	AAAGATGATGCAGATCATCAAT
Serratia proteamaculans 568	Spro_2703	-268	5.2	TTTTGTGATTTAAATCATAAAA
Proteus mirabilis HI4320	PMI1485	-290	5.3	TAAAGTGATCTACATCACAATA
Photorhabdus luminescens subsp. laumondii TTO1	plu2495	-295	4.9	TATATTGATCTTAATCACATAA

Position: -82 Score: 4 Sequence: AAATGTGATCTGTGTTAGATCA Locus tag: SPA1145
	SPA1145	-82	4	AAATGTGATCTGTGTTAGATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W
Escherichia coli str. K-12 substr. MG1655	b1256	-166	4.9	AAAATTGATTTAAATCACATTA
		-82	3.8	TAATGTGATCTATGTAGGATCA
Salmonella typhimurium LT2	STM1732	-82	4.2	AAATGTGATCTGTATTAGATCA
Citrobacter koseri ATCC BAA-895	CKO_01333	-82	3.9	TAATGTGATCTGTATTGGATCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01248	-101	3.9	CATTGCGATCGGTAGCAAAAAT
		-45	4	TAGTGTGATCTAAAACAGATCA
Enterobacter sp. 638	Ent638_2283	-121	3.7	AAAATTAATCTGGATCAACAAA
Yersinia pestis KIM	y2044	-69	3.9	AGATGTGATCTCGATTAGATCA
Serratia proteamaculans 568	Spro_2674	-135	3.8	TTTTTTGATTCAGATCAATCCT
Edwardsiella tarda EIB202	ETAE_1528	-161	3.9	CTGATTGATGTCTATCAAATTT
Proteus mirabilis HI4320	PMI1350	-168	4.6	AAATTTGATGTGGATCAATTAT
		-85	3.8	AGTTGTGATCGGCATTAGATCA
Photorhabdus luminescens subsp. laumondii TTO1	plu2478	-164	4.3	AACTTTGATTTGGATCAAGTTA
		-39	3.8	TATTTTGATTGACTTTAAATCA

Position: -94 Score: 4.5 Sequence: AAATGAGAAGCAGGTCACAAAA Locus tag: SPA1333
	SPA1333	-94	4.5	AAATGAGAAGCAGGTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sotB
Ortholog function: Probable sugar efflux transporter
Escherichia coli str. K-12 substr. MG1655	b1528	-94	4.9	AAACGCGATCCAGATCACAAAT
Salmonella typhimurium LT2	STM1522	-94	4.5	AAATGAGAAGCAGGTCACAAAA
Citrobacter koseri ATCC BAA-895	CKO_01548	-94	4.8	TAATGAGACATACATCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01628	-94	4.8	AAATGAGACGCAGATCACAAAA
Enterobacter sp. 638	Ent638_2000	-95	4.9	TTTTGAGATCTGCGTCACATAA

Position: -65 Score: 3.8 Sequence: AGTATTGAAGTGTTTCACCATA Locus tag: SPA1366
	SPA1366	-65	3.8	AGTATTGAAGTGTTTCACCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mlc
Ortholog function: ROK family transcriptional regulatory protein
Escherichia coli str. K-12 substr. MG1655	b1594	-108	4.1	AAATGTGCTGTTAATCACATGC
Salmonella typhimurium LT2	STM1488	-65	3.8	AGTATTGAAGTGTTTCACCATA
Citrobacter koseri ATCC BAA-895	CKO_01593	-107	3.6	AAaTGTGcagTAaATCACAcgg
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01574	-104	3.8	AAATGTGCGGTAAATCACAAGG
Enterobacter sp. 638	Ent638_1919	-107	3.8	AAATGTGCGGTAAATCACAAGG
Erwinia amylovora ATCC 49946	EAM_1710	-143	4.9	TTATGTGCTGTAAATCACATTC
Yersinia pestis KIM	y2110	-146	4.8	TTATGTGCAGCAAATCACATAA
Serratia proteamaculans 568	Spro_2283	-111	4.8	ATTTGTGCAGCAAATCACATAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2258	-226	4.4	ATATGCGCGCTAAATCACATAA
Edwardsiella tarda EIB202	ETAE_1713	-113	4.8	ATTTGTGCACTTAATCACATAA
Proteus mirabilis HI4320	PMI1292	-126	4.7	ATATGTGCTTTCCATCACGATT
Photorhabdus luminescens subsp. laumondii TTO1	plu2226	-119	4.8	TTTCGTGCTGAATATCACATAT

Position: -93 Score: 4 Sequence: TTATCTGATTTTACTCCCACTT Position: -9 Score: 3.5 Sequence: GAGTGTGATATGCATAAAACCA Locus tag: SPA1370
	SPA1370	-93	4	TTATCTGATTTTACTCCCACTT
		-9	3.5	GAGTGTGATATGCATAAAACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydgD
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b1598	-93	4	TTATCTGATTTTACTCCCACTT
Salmonella typhimurium LT2	STM1484	-93	4	TTATCTGATTTTACTCCCACTT
Citrobacter koseri ATCC BAA-895	CKO_01604	-95	4	TTATCTGATTTTACTCCCACTT
Enterobacter sp. 638	Ent638_1914	-53	4.1	TATTTTAATAGGGTTCACTTTT
Yersinia pestis KIM	y2013	-160	3.6	TTTTTTTATTTATAGCACGAAC

Position: -56 Score: 3.6 Sequence: TTGTGTAATACTTGTAACGCTA Locus tag: SPA1476
	SPA1476	-56	3.6	TTGTGTAATACTTGTAACGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lpp
Ortholog function: major outer membrane lipoprotein
Escherichia coli str. K-12 substr. MG1655	b1677	-56	3.6	TTGTGTAATACTTGTAACGCTA
Salmonella typhimurium LT2	STM1377	-56	3.6	TTGTGTAATACTTGTAACGCTA
Citrobacter koseri ATCC BAA-895	CKO_01710	-56	3.6	TTGTGTAATACTTGTAACGCTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02134	-56	3.6	TTGTGTAATACTTGTAACGCTA
Enterobacter sp. 638	Ent638_1767	-56	3.6	TTGTGTAATACTTGTAACGCTA
Erwinia amylovora ATCC 49946	EAM_1656	-56	3.6	TTGTGTAATACTTGTAACGCTA
Serratia proteamaculans 568	Spro_2186	-55	3.6	TTGTGTAATACTTGTAACGCTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1866	-56	3.6	TTGTGTAATACTTGTAACGCTA
Edwardsiella tarda EIB202	ETAE_1852	-55	3.6	TTGTGTAATACTTGTAACGCTA
Proteus mirabilis HI4320	PMI1409	-200	4.4	TTTTGTGAAATAACACGCATTT

Position: -106 Score: 4.3 Sequence: AGGTGTGACACGCCTCGCACTT Position: -64 Score: 4 Sequence: TATCGTGATGCCCATCACTTCC Locus tag: SPA1496
	SPA1496	-106	4.3	AGGTGTGACACGCCTCGCACTT
		-64	4	TATCGTGATGCCCATCACTTCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroH
Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase
Escherichia coli str. K-12 substr. MG1655	b1704	-106	4.3	AGGTGTGACACACCTCGCACTT
		-64	4	TATCGTGATGCGCATCACTTCC
Salmonella typhimurium LT2	STM1347	-106	4.3	AGGTGTGACACGCCTCGCACTT
		-64	4	TATCGTGATGCCCATCACTTCC
Citrobacter koseri ATCC BAA-895	CKO_01728	-115	4.3	AGGTGTGAAACGCCTCGCATTT
		-64	4.3	TATTGTGATGCCCATCACTTCC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02162	-63	4	TATCGTGATGCGCATCACTTCC
Enterobacter sp. 638	Ent638_1743	-126	3.6	AGTTATGATCGCTTTCACTCTC
		-62	3.6	TAAGGTGATGCCCATCACTTCC
Yersinia pestis KIM	y1928	-64	4.3	TATTGTGATCGCCATCACTTCC
Serratia proteamaculans 568	Spro_2172	-135	3.9	TTTTGTGCTTTTTTTAGCGATT
		-64	4.3	TATTGTGATCGCCATCACTTCC
Edwardsiella tarda EIB202	ETAE_1792	-63	4	TATCGTGATCCCCATCACTTCC
Proteus mirabilis HI4320	PMI1423	-55	3.9	TATTGTGATCTTAATCACTGGG
Photorhabdus luminescens subsp. laumondii TTO1	plu2630	-62	3.8	TATTGTAATTTCCATTATCTAT

Position: -91 Score: 3.9 Sequence: ATATAAGAGCCAGCTCACAGTT Locus tag: SPA1524
	SPA1524	-91	3.9	ATATAAGAGCCAGCTCACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tcyP
Ortholog function: L-cystine uptake protein TcyP
Escherichia coli str. K-12 substr. MG1655	b1729	-90	3.9	ATATAAGAGCCAGCTCACAGTT
Salmonella typhimurium LT2	STM1320	-91	3.9	ATATAAGAGCCAGCTCACAGTT
Citrobacter koseri ATCC BAA-895	CKO_01755	-90	3.7	ATATAAGAGGTCGGTCACAGTT
Yersinia pestis KIM	y1878	-166	3.6	TGATTTGATTTAATACAAATCA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2410	-176	3.7	TGACGTTATCTGCTGCACCCAT

Position: -250 Score: 3.9 Sequence: TTTTGTGCCTGCCATAACCTTA Position: -203 Score: 3.9 Sequence: AAATGTGAGGGGGGTCATAACG Locus tag: SPA1532
	SPA1532	-250	3.9	TTTTGTGCCTGCCATAACCTTA
		-203	3.9	AAATGTGAGGGGGGTCATAACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: chbB
Ortholog function: N,N'-diacetylchitobiose-specific PTS system , EIIB component
Salmonella typhimurium LT2	STM1312	-250	3.9	TTTTGTGCCTGCCATAACCTTA
		-203	3.9	AAATGTGAGGGGGGTCATAACG

Position: -107 Score: 3.6 Sequence: TTTCTTGCTTACCGTCACATTG Position: -55 Score: 3.6 Sequence: TATTCTGATAAAACGCAAATAC Locus tag: SPA1545
	SPA1545	-107	3.6	TTTCTTGCTTACCGTCACATTG
		-55	3.6	TATTCTGATAAAACGCAAATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: gdhA
Ortholog function: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Escherichia coli str. K-12 substr. MG1655	b1761	-106	3.5	TTTCTTGCTTACCGTCACATTC
Salmonella typhimurium LT2	STM1299	-107	3.6	TTTCTTGCTTACCGTCACATTG
		-55	3.6	TATTCTGATAAAACGCAAATAC
Citrobacter koseri ATCC BAA-895	CKO_01789	-107	3.4	TTTCTTGCTTACCGTCACACTG
Enterobacter sp. 638	Ent638_1685	-110	3.3	AATTTTCACTTGCCTCGCAAAG
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0051	-234	3.6	TTTTGTTATATAACAAAAACTT
Proteus mirabilis HI4320	PMI3008	-195	3.4	AATCCTGATTTTATTAGCCTTT
		-88	3.5	AAACAATATCAACCTCACATAA
Photorhabdus luminescens subsp. laumondii TTO1	plu0122	-92	3.5	AAACACAACTTACCTCACATTT

Position: -122 Score: 4.7 Sequence: TAATGTGACATCAGTCACGATT Locus tag: SPA1553
	SPA1553	-122	4.7	TAATGTGACATCAGTCACGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: msrB
Ortholog function: methionine sulfoxide reductase B
Escherichia coli str. K-12 substr. MG1655	b1778	-137	5.2	AAATGTGATTTTCATCACGATT
Salmonella typhimurium LT2	STM1291	-107	4.7	TAATGTGACATCAGTCACGATT
Citrobacter koseri ATCC BAA-895	CKO_01799	-107	4.9	AAACGTGATTCCGATCACGATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01198	-135	5.1	AAACGTGATTTAAGTCACAATT
Enterobacter sp. 638	Ent638_1676	-137	5.2	ATATGTGAGAAAGATCACAATT
Erwinia amylovora ATCC 49946	EAM_1930	-137	5.2	AATGGTGATCTGCATCACAATT
Yersinia pestis KIM	y2164	-85	5.1	ATTTGCGATTTTTATCACATTT
Serratia proteamaculans 568	Spro_2727	-143	5.7	ATATGTGATCGGTATCACATAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2343	-135	5.6	TTATGTGATACACATCACAATT
Edwardsiella tarda EIB202	ETAE_1484	-91	4.9	GTTTGTGATGCTCATCACAAAA
Proteus mirabilis HI4320	PMI1503	-137	5.3	TTATGTGAAATGTATCACATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2557	-267	4.6	ATATGCGAGTCACATCACAATA

Position: -226 Score: 4.8 Sequence: AATCGTGACTGATGTCACATTA Locus tag: SPA1554
	SPA1554	-226	4.8	AATCGTGACTGATGTCACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gapA
Ortholog function: glyceraldehyde-3-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655	b1779	-226	5.3	AATCGTGATGAAAATCACATTT
Salmonella typhimurium LT2	STM1290	-226	4.8	AATCGTGACTGATGTCACATTA
Citrobacter koseri ATCC BAA-895	CKO_01800	-226	5	AATCGTGATCGGAATCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01197	-225	5.2	AATTGTGACTTAAATCACGTTT
Enterobacter sp. 638	Ent638_1675	-225	5.7	AATTGTGATCTTTCTCACATAT
Erwinia amylovora ATCC 49946	EAM_1931	-215	5.4	AATTGTGATGCAGATCACCATT
Yersinia pestis KIM	y2165	-218	5.1	AAATGTGATAAAAATCGCAAAT
Serratia proteamaculans 568	Spro_2728	-227	5.6	ATATGTGATACCGATCACATAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2344	-235	5.8	AATTGTGATGTGTATCACATAA
Edwardsiella tarda EIB202	ETAE_1483	-227	5.1	TTTTGTGATGAGCATCACAAAC
Proteus mirabilis HI4320	PMI1504	-226	5.6	AAATGTGATACATTTCACATAA
Photorhabdus luminescens subsp. laumondii TTO1	plu2558	-224	5.4	TATTGTGATGTGACTCGCATAT

Position: -73 Score: 3.6 Sequence: AAAAGTGACCTGACGCAATATT Locus tag: SPA1623
	SPA1623	-73	3.6	AAAAGTGACCTGACGCAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepT
Ortholog function: peptidase T
Escherichia coli str. K-12 substr. MG1655	b1127	-73	3.6	AAAAGTGACCTGACGCAATATT
Salmonella typhimurium LT2	STM1227	-73	3.6	AAAAGTGACCTGACGCAATATT
Citrobacter koseri ATCC BAA-895	CKO_01926	-73	3.6	AAAAGTGACCTGACGCAATATT
Enterobacter sp. 638	Ent638_1640	-31	3.6	AAAAGTGACCTGACGCAATATT
Yersinia pestis KIM	y1791	-27	3.7	ATATTTGATCATGATCACTTCC
Serratia proteamaculans 568	Spro_2009	-188	4.1	CGTCGTGAAGAAGATCACACAT

Position: -88 Score: 4.7 Sequence: ACGTGTGATGTAGATCACATCT Locus tag: SPA1637
	SPA1637	-88	4.7	ACGTGTGATGTAGATCACATCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycfR
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b1112	-114	3.7	ATTAATGATTGTTATAAAAAAT
		-87	4.8	GTATGTGATCCAGATCACATCT
Salmonella typhimurium LT2	STM1214	-88	4.7	ACGTGTGATGTAGATCACATCT
Citrobacter koseri ATCC BAA-895	CKO_01942	-113	3.8	TATAATGATCGTTATAAAAAAA
		-86	4.5	ACGTGTGACCTGGATCACATCT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01110	-95	4.9	ACGTGTGACATAGATCACATTA
Enterobacter sp. 638	Ent638_1627	-91	4.7	ACGTGTGATGCAGATCACATCT
Serratia proteamaculans 568	Spro_4435	-116	3.7	TTATTTGATAAAGATTATCAAA

Position: -175 Score: 4.7 Sequence: AGATGTGATCTACATCACACGT Locus tag: SPA1638
	SPA1638	-175	4.7	AGATGTGATCTACATCACACGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycfQ
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b1111	-175	5.3	AGATGTGATCTGGATCACATAC
Salmonella typhimurium LT2	STM1213	-175	4.7	AGATGTGATCTACATCACACGT
Citrobacter koseri ATCC BAA-895	CKO_01943	-227	4.4	AGATGTGATCCAGGTCACACGT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01109	-227	4.8	TAATGTGATCTATGTCACACGT
Enterobacter sp. 638	Ent638_1626	-174	4.6	AGATGTGATCTGCATCACACGT

Position: -178 Score: 4.1 Sequence: AAACTTGATGCACATCAATTTT Locus tag: SPA1640
	SPA1640	-178	4.1	AAACTTGATGCACATCAATTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase (EC 1.6.99.3)
Escherichia coli str. K-12 substr. MG1655	b1109	-154	3.9	AAACTTGATTAACATCAATTTT
Salmonella typhimurium LT2	STM1211	-154	4.1	AAACTTGATGCACATCAATTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01106	-152	4.1	AAACTTGATGCACATCAATTTT
Enterobacter sp. 638	Ent638_1624	-153	4	AAACTTGATTCATATCAATTTT
Erwinia amylovora ATCC 49946	EAM_1473	-55	3.7	TAAGGTTATTTTATTAACCTTT
Yersinia pestis KIM	y1777	-152	3.8	AAAGTTGATATATATCAATTTT
Serratia proteamaculans 568	Spro_1926	-153	4.3	AAGTTTGATGTACATCAATTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1815	-153	4	TAAATTGATATATATCAATTTT
Edwardsiella tarda EIB202	ETAE_2070	-166	4.3	TTATTTGATTTGAATCAATTTT
Proteus mirabilis HI4320	PMI0875	-157	4.6	TTTTTTGATATAAATCAACTTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2821	-154	3.8	GAATTTGATGTTGTTCAATTTT

Position: -155 Score: 4.4 Sequence: AAACGTGATAGCCGTCAAACAA Locus tag: SPA1648
	SPA1648	-155	4.4	AAACGTGATAGCCGTCAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ptsG
Ortholog function: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655	b1101	-154	4.4	AAACGTGATAGCCGTCAAACAA
Salmonella typhimurium LT2	STM1203	-155	4.4	AAACGTGATAGCCGTCAAACAA
Citrobacter koseri ATCC BAA-895	CKO_01957	-229	4.4	AAACGTGATAGCCGTCAAACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01099	-155	4.4	AAACGTGATAGCCGTCAAACAA
Enterobacter sp. 638	Ent638_1616	-155	4.4	AAACGTGATAGCCGTCAAACAA
Erwinia amylovora ATCC 49946	EAM_1466	-162	4.6	AAACGTGATAGCCATCAAACAA
Yersinia pestis KIM	y1767	-166	4.4	AAACGTGACGGCAATCAAACAT
Serratia proteamaculans 568	Spro_1914	-164	4.4	AAACGTGACTGTCATCAAACAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1805	-162	4.6	AAACGTGATAGCAATCAAACAT
Proteus mirabilis HI4320	PMI2292	-156	4.5	AAACGTGACAGCTATCATATAT

Position: -202 Score: 4.1 Sequence: TTTTGTTACAAGTTTAACACTT Locus tag: SPA1709
	SPA1709	-202	4.1	TTTTGTTACAAGTTTAACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: csgD
Ortholog function: DNA-binding transcriptional activator in two-component regulatory system
Escherichia coli str. K-12 substr. MG1655	b1040	-201	3.9	TTTAGTTACATGTTTAACACTT
		-134	3.3	TAGTTTTATATTTTACCCATTT
Salmonella typhimurium LT2	STM1142	-202	3.4	TTTGGTTACAAGTTTAACACTT
Citrobacter koseri ATCC BAA-895	CKO_02029	-207	4.1	TTTTGTTACAAGTTTAACACTT

Position: -4 Score: 4.2 Sequence: AAATGTGTGCGCGATCTCATTA Locus tag: SPA1713
	SPA1713	-4	4.2	AAATGTGTGCGCGATCTCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycdZ
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b1036	-52	4	AAATGTGTGCTCGATCTCATTC
		-50	3.7	ATGTGTGCTCGATCTCATTCAT
Citrobacter koseri ATCC BAA-895	CKO_02033	-40	3.9	AAATGTGTGCGTGATCTCATTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01059	-52	4.1	TACTGTGTTTTAGATCGCATTC
Serratia proteamaculans 568	Spro_3290	-125	4.2	TTTTGTGACAAATTCCACATCT
		-96	3.6	TATCTTGTTTCTCATTACATAT
		-73	4.6	TTATGTGAAATACATCACATGA
Edwardsiella tarda EIB202	ETAE_2360	-124	4.3	AAGTGTGATTGATGTCACTTTG
		-72	3.6	CGGTGTGATGTCCATCAATGAA
Proteus mirabilis HI4320	PMI3124	-240	3.7	ATTAATAATATATATCAAACAA

Position: -321 Score: 4.2 Sequence: ATTAGTGATAGCATTCGAATAA Position: -287 Score: 4.7 Sequence: TTATGTGATGCATTTCATACTG Locus tag: SPA1722
	SPA1722	-321	4.2	ATTAGTGATAGCATTCGAATAA
		-287	4.7	TTATGTGATGCATTTCATACTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nanE
Ortholog function: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)
Salmonella typhimurium LT2	STM3337	-113	4.4	TTTAGTGAAGCAGATCGCACTA
Citrobacter koseri ATCC BAA-895	CKO_04626	-116	4.2	TTTAGTGAAGTAGATCGCACTC

Position: -204 Score: 3.6 Sequence: AAATGTGAGAGAGTGCAACCTG Locus tag: SPA1726
	SPA1726	-204	3.6	AAATGTGAGAGAGTGCAACCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: putP
Ortholog function: Proline/sodium symporter PutP (TC 2.A.21.2.1)
Escherichia coli str. K-12 substr. MG1655	b1015	-207	3.6	AAATGTGAGAGAGTGCAACCTG
Salmonella typhimurium LT2	STM1125	-204	3.6	AAATGTGAGAGAGTGCAACCTG
Citrobacter koseri ATCC BAA-895	CKO_02041	-80	3.6	AAATGTGAGAGAGTGCAACCTG
Enterobacter sp. 638	Ent638_1542	-249	3.7	TTTTATGCGGCACTTAACACTT
Serratia proteamaculans 568	Spro_2930	-211	3.9	AAATGTGACGCAGGGTAAACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4218	-130	3.7	TTGTGCAACCTTGTTAACAAAT
Proteus mirabilis HI4320	PMI1615	-220	3.8	TAGTGTGAAGTTACATACAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1958	-243	4.4	AAATGTGATTCAGTAAACGTTT

Position: -174 Score: 5.2 Sequence: ATTTGTGATGTGATTAACAATA Locus tag: SPA1750
	SPA1750	-174	5.2	ATTTGTGATGTGATTAACAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hpaR
Ortholog function: 4-hydroxyphenylacetate catabolism
Salmonella typhimurium LT2	STM1100	-174	5.2	ATTTGTGATGTGATTAACAATA

Position: -188 Score: 4.3 Sequence: ATGTCTGACGGAGTTCACACTT Locus tag: SPA1780
	SPA1780	-188	4.3	ATGTCTGACGGAGTTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompA
Ortholog function: outer membrane protein A
Escherichia coli str. K-12 substr. MG1655	b0957	-188	4	ATGCCTGACGGAGTTCACACTT
Salmonella typhimurium LT2	STM1070	-188	4.3	ATGTCTGACGGAGTTCACACTT
Citrobacter koseri ATCC BAA-895	CKO_02111	-164	4	ATGCCTGACGGAGTTCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00986	-185	3.9	ATGCCTGACAGAGTTCACACTT
Enterobacter sp. 638	Ent638_1469	-189	4	ATGCCTGACGGAGTTCACACTT
Serratia proteamaculans 568	Spro_1754	-195	3.8	TTTTTAGAGCTTTATCACATCA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1751	-200	3.9	TCTTATGACACAAATCACATCA
Edwardsiella tarda EIB202	ETAE_1267	-196	3.7	TTTGGTGAGCATAATCACATCG

Position: -245 Score: 4.5 Sequence: AAGTTTGACGTTGTTCACAAAG Locus tag: SPA1799
	SPA1799	-245	4.5	AAGTTTGACGTTGTTCACAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompF
Ortholog function: Outer membrane protein F precursor
Salmonella typhimurium LT2	STM0999	-245	4.5	AAGTTTGACGTTGTTCACAAAG
Enterobacter sp. 638	Ent638_1448	-245	4.6	AAATTTGAGGTGGTTCACAAAG

Position: -142 Score: 4 Sequence: TTGTGTGACGAATGCCGCATTT Locus tag: SPA1821
	SPA1821	-142	4	TTGTGTGACGAATGCCGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: serC
Ortholog function: Phosphoserine aminotransferase (EC 2.6.1.52)
Escherichia coli str. K-12 substr. MG1655	b0907	-155	4.8	TTGTGTGATGCAAGCCACATTT
Salmonella typhimurium LT2	STM0977	-142	4.2	TTGTGTGACGCATGCCGCATTT
Citrobacter koseri ATCC BAA-895	CKO_02165	-171	4.6	TTGTGTGACGTAGCGCGCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00935	-145	3.7	TTGTGTGACGGCGGCCGCGTTT
Enterobacter sp. 638	Ent638_1427	-119	4.4	TTGTGTGACGGTGGACACATTT
Yersinia pestis KIM	y2784	-39	3.3	TATAACGATGGCAATCTCAGTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2594	-78	3.5	AAGTATGACGGGTATAAAAATG
Proteus mirabilis HI4320	PMI0711	-119	3.5	TATTTTTGTGTGCTACACATAA

Position: -78 Score: 4.4 Sequence: AGATATGATCTATATCAAATTC Locus tag: SPA1824
	SPA1824	-78	4.4	AGATATGATCTATATCAAATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: focA
Ortholog function: formate transporter
Escherichia coli str. K-12 substr. MG1655	b0904	-156	3.6	TATTTTTATTTGGATAATCAAA
		-78	3.8	AGATATGATCTATATCAATTTC
Salmonella typhimurium LT2	STM0974	-78	4.4	AGATATGATCTATATCAAATTC
Citrobacter koseri ATCC BAA-895	CKO_02167	-198	3.6	TATTTTTATTTGGATAATCAAA
		-120	4.4	AGATATGATCTATATCAAATTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00932	-121	3.8	AGATATGATCTATATCAATTTC
Enterobacter sp. 638	Ent638_1424	-78	3.8	AGATATGATCTATATCAATTTC
Yersinia pestis KIM	y2789	-84	4	CAATATGATCCATATCAATTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2596	-79	4.5	CAATATGATCCACATCAAATTT
Proteus mirabilis HI4320	PMI0706	-188	4	TTTTTTGATAAAATTTAAAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1614	-88	4.7	AATTATGATCTATATCAAATTC

Position: -29 Score: 4.2 Sequence: AAATTTGAACTTCCTCACGGTT Locus tag: SPA1830
	SPA1830	-29	4.2	AAATTTGAACTTCCTCACGGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycaD
Ortholog function: Hypothetical MFS-type transporter protein ycaD
Escherichia coli str. K-12 substr. MG1655	b0898	-29	4.2	AAATTTGAACTTCCTCACGGTT
Salmonella typhimurium LT2	STM0968	-29	4.2	AAATTTGAACTTCCTCACGGTT
Citrobacter koseri ATCC BAA-895	CKO_02171	-29	4.2	AAATTTGAACTTCCTCACGGTT

Position: -164 Score: 4 Sequence: AAATTTGAAGCAGTTAACGCTA Position: -135 Score: 3.6 Sequence: GAATGTGACAGATGTCGCGGAT Position: -104 Score: 3.6 Sequence: AGATGTTAGTTATCTATCAATT Locus tag: SPA1855
	SPA1855	-164	4	AAATTTGAAGCAGTTAACGCTA
		-135	3.6	GAATGTGACAGATGTCGCGGAT
		-104	3.6	AGATGTTAGTTATCTATCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: clpS
Ortholog function: ATP-dependent Clp protease adaptor protein
Escherichia coli str. K-12 substr. MG1655	b0881	-164	4	AAATTTGAAGCAGTTAACGCTA
Salmonella typhimurium LT2	STM0944	-164	4	AAATTTGAAGCAGTTAACGCTA
		-104	3.6	AGATGTTAGTTATCTATCAATT
Citrobacter koseri ATCC BAA-895	CKO_02199	-164	4	AAATTTGAAGCAGTTAACGCTA
		-135	4.2	TAATGTGACAGATGTCGCGGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00914	-167	4	AAATTTGAAGCAGTTAACGCTA
		-77	4.3	ATTTGTGATGAGCATAACCTCT
Enterobacter sp. 638	Ent638_1398	-161	3.9	ATTTTTGAAGCAGTTAACGCTA
		-132	3.8	GAATGTGACAGATATCGCGGAT
Erwinia amylovora ATCC 49946	EAM_1320	-161	4	AAATTTGAAGCAGTTAACGCTA
		-132	4.5	TTTTGTGATAGAGGTCGCTATT
Serratia proteamaculans 568	Spro_1673	-176	3.6	AAGTTTGAAGCAGGTAACGCTA
Edwardsiella tarda EIB202	ETAE_2208	-164	3.8	AAGTTTGAGGCAGTTAACGCAA
		-144	3.6	AATTGTGCGGCAGTGCGCTTTT
Proteus mirabilis HI4320	PMI0689	-268	3.7	TGTCTTTATTTACTTAACATTA
		-148	4.1	AACTTTGATGTAGCTAACGCTT
Photorhabdus luminescens subsp. laumondii TTO1	plu1593	-170	4.3	AAGTTTGATATAGATAACGATA

Position: -181 Score: 4 Sequence: TAGCGTTAACTGCTTCAAATTT Locus tag: SPA1856
	SPA1856	-181	4	TAGCGTTAACTGCTTCAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cspD
Ortholog function: cold shock-like protein
Escherichia coli str. K-12 substr. MG1655	b0880	-180	4	TAGCGTTAACTGCTTCAAATTT
Salmonella typhimurium LT2	STM0943	-181	4	TAGCGTTAACTGCTTCAAATTT
Citrobacter koseri ATCC BAA-895	CKO_02200	-210	3.9	ATCCGCGACATCTGTCACATTA
		-181	4	TAGCGTTAACTGCTTCAAATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00913	-270	4.2	AGAGGTTATGCTCATCACAAAT
		-180	4	TAGCGTTAACTGCTTCAAATTT
Enterobacter sp. 638	Ent638_1397	-209	3.8	ATCCGCGATATCTGTCACATTC
		-180	3.9	TAGCGTTAACTGCTTCAAAAAT
Serratia proteamaculans 568	Spro_1672	-205	4	TAGCGTTACCTGCTTCAAACTT
		-49	3.9	TTCAGTTATTCATCTCACCTAA
Proteus mirabilis HI4320	PMI0688	-163	3.8	AAGCGTTAGCTACATCAAAGTT
Photorhabdus luminescens subsp. laumondii TTO1	plu1592	-194	4.6	TATCGTTATCTATATCAAACTT

Position: -149 Score: 4 Sequence: AGATGTGTACGAAATCACGTTT Locus tag: SPA1915
	SPA1915	-149	4	AGATGTGTACGAAATCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybiT
Ortholog function: ABC transporter ATP-binding protein
Escherichia coli str. K-12 substr. MG1655	b0820	-124	4.4	AGATGTGTACGAAATCACATTT
Salmonella typhimurium LT2	STM0838	-124	4	AGATGTGTACGAAATCACGTTT
Citrobacter koseri ATCC BAA-895	CKO_02298	-148	4.4	AGATGTGTACGAAATCACATTT
Enterobacter sp. 638	Ent638_1311	-125	4.4	AGATGTGTACGAAATCACATTT
Yersinia pestis KIM	y2677	-295	3.9	TATCGTTATACCCGTCATACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3010	-41	4	TAATGCGCGCCAAATCACATTC
Edwardsiella tarda EIB202	ETAE_2518	-40	4.8	TAATGTGAACAAAATCACGTTA

Position: -116 Score: 4.4 Sequence: AAACGTGATTTCGTACACATCT Locus tag: SPA1916
	SPA1916	-116	4.4	AAACGTGATTTCGTACACATCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybiS
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b0819	-116	4.7	AAATGTGATTTCGTACACATCT
Salmonella typhimurium LT2	STM0837	-116	4.4	AAACGTGATTTCGTACACATCT
Citrobacter koseri ATCC BAA-895	CKO_02299	-202	3.8	ATATGTGACAAACCGCTTATTA
		-116	4.7	AAATGTGATTTCGTACACATCT
Enterobacter sp. 638	Ent638_1310	-119	4.7	AAATGTGATTTCGTACACATCT

Position: -124 Score: 4.7 Sequence: TTTTGTGATGCGGCGCATAAAT Locus tag: SPA1934
	SPA1934	-124	4.7	TTTTGTGATGCGGCGCATAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybiH
Ortholog function: putative transcriptional regulator
Escherichia coli str. K-12 substr. MG1655	b0796	-123	4.5	TTTTGTGACGCAGCGCATAAAT
Salmonella typhimurium LT2	STM0819	-124	4.7	TTTTGTGATGCGGCGCATAAAT
Citrobacter koseri ATCC BAA-895	CKO_02331	-124	4.5	TTTTGTGACATACCGCATAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00824	-224	3.6	AAATGAAACGGTATTCAAAAAA
		-118	4.7	AATTGTTAAGCCCATCACAAAT
Enterobacter sp. 638	Ent638_1287	-126	4.4	TTTTGTGACACGGCGCATAAAA
Serratia proteamaculans 568	Spro_1330	-146	4.6	TTAAGTGACGCAGAGCACAATA
Proteus mirabilis HI4320	PMI0619	-160	3.6	AATTTTTAAATAAATCATGTTT

Position: -98 Score: 3.8 Sequence: TAGTGTAGTCGTCGTCACAAAA Locus tag: SPA1939
	SPA1939	-98	3.8	TAGTGTAGTCGTCGTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybhQ
Ortholog function: putative inner membrane protein
Escherichia coli str. K-12 substr. MG1655	b0791	-98	3.9	TAGTGTAGTCGGCGTCACAAAA
Salmonella typhimurium LT2	STM0814	-98	3.8	TAGTGTAGTCGTCGTCACAAAA
Citrobacter koseri ATCC BAA-895	CKO_02336	-153	3.8	TAGTGTAGTCGTCGTCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00819	-97	3.8	TAGTGTAGTAGACGTCACAAAA
Enterobacter sp. 638	Ent638_1282	-98	3.9	AAGTGTAGTCGGCGTCACAAAA

Position: -56 Score: 4 Sequence: TTTTGTGACGACGACTACACTA Locus tag: SPA1940
	SPA1940	-56	4	TTTTGTGACGACGACTACACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybhP
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b0790	-56	4.2	TTTTGTGACGCCGACTACACTA
Salmonella typhimurium LT2	STM0813	-56	4	TTTTGTGACGACGACTACACTA
Citrobacter koseri ATCC BAA-895	CKO_02337	-56	4	TTTTGTGACGACGACTACACTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00818	-56	4.2	TTTTGTGACGTCTACTACACTA
Enterobacter sp. 638	Ent638_1281	-57	4.2	TTTTGTGACGCCGACTACACTT

Position: -78 Score: 3.7 Sequence: TAATTTATTACATGTCACACTT Locus tag: SPA1976
	SPA1976	-78	3.7	TAATTTATTACATGTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: galE2
Ortholog function: UDP-galactose-4-epimerase
Escherichia coli str. K-12 substr. MG1655	b0759	-78	3.8	TAATTTATTCCATGTCACACTT
Salmonella typhimurium LT2	STM0776	-78	3.7	TAATTTATTACATGTCACACTT
Citrobacter koseri ATCC BAA-895	CKO_02376	-36	3.7	TAATATATTCCATGTCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00773	-78	3.7	TAACTTGTGCTATGTCACACTT
		-44	4.1	ATATGCTATCTTCCTCACAAAC
Yersinia pestis KIM	y3043	-163	3.7	TTATTTGTCTATGCTCACAGAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1389	-72	3.7	ATTCTCGCTGTAGATCACCTTT
Edwardsiella tarda EIB202	ETAE_2564	-195	3.7	TAGTGTAAGCGATACCACAAAC

Position: -125 Score: 3.6 Sequence: GTAAGTGACTGGGGTAACAAAT Locus tag: SPA2000
	SPA2000	-125	3.6	GTAAGTGACTGGGGTAACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybgE
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b0735	-300	3.6	TAAATTGTTCTCGATCAAATTG
		-255	3.6	TAAATTGATCACCGTCGAAAAA
Salmonella typhimurium LT2	STM0743	-256	3.7	TAAATTGATCGCTGTCGAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00739	-252	3.6	TATATTGATCACCGTCGAAAAA
Serratia proteamaculans 568	Spro_1274	-300	3.7	AAGTCTAACCCACATCACGTAA
Edwardsiella tarda EIB202	ETAE_2578	-222	3.6	TATTGTTATATTTGTTATCTTT
Proteus mirabilis HI4320	PMI0576	-247	3.8	AAATATGCTGTTACTAACCTAA

Position: -256 Score: 3.7 Sequence: TAAATTGATCGCTGTCGAAAAA Locus tag: SPA2003
	SPA2003	-256	3.7	TAAATTGATCGCTGTCGAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydA
Ortholog function: cytochrome d terminal oxidase, polypeptide subunit I
Salmonella typhimurium LT2	STM0740	-256	3.7	TAAATTGATCGCTGTCGAAAAA

Position: -315 Score: 4.2 Sequence: TATCGTGACCTGTGTCACTGTT Locus tag: SPA2011
	SPA2011	-315	4.2	TATCGTGACCTGTGTCACTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Enterobacter sp. 638	Ent638_1222	-295	4.2	TATCGTGACTGTGATCACTGTT
Erwinia amylovora ATCC 49946	EAM_1168	-249	4.4	AAGTGTGATTTTTGTCACTGTT
		-190	3.6	TAATGAGATTGTGATCCACTTA
Yersinia pestis KIM	y3071	-254	4.5	AATCGTGATCCTAATCACTGTT
Serratia proteamaculans 568	Spro_1263	-253	4.3	ATCCGTGATCTAAATCACTGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1357	-265	4.7	ATTCGTGATCTAAATCACTGTT
Edwardsiella tarda EIB202	ETAE_2588	-261	3.7	ATGCGTGACCGTTGTCACTGTT
Proteus mirabilis HI4320	PMI0565	-264	4.3	AAAAGTGATCCCTCTCACTGTT

Position: -177 Score: 4.8 Sequence: TTTAGTGATTATAATCACAAAA Locus tag: SPA2056
	SPA2056	-177	4.8	TTTAGTGATTATAATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagE
Ortholog function: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655	b0679	-176	4.4	TTTGGTGACAAAACTCACAAAA
		-142	4.2	ATTTGCGATACGAATTAAATTT
Salmonella typhimurium LT2	STM0685	-177	4.8	TTTAGTGATTATAATCACAAAA
Citrobacter koseri ATCC BAA-895	CKO_02485	-181	4.9	TTTGGTGATTCAAATCACAAAA
		-147	3.6	ATTTGCGATACGAATTAATTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00700	-153	4.7	TTTGGTGATAATTATCACAAAA
		-119	3.6	ATTTGCGATACGAATTAATTTT
Erwinia amylovora ATCC 49946	EAM_1148	-161	4.8	TAAGGTGACTTTAATCACATAT
Serratia proteamaculans 568	Spro_1228	-162	5.1	TTTGGTGATGTAAATCACAAAA
		-44	3.9	AAATATGATAAAGCTCATTAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1318	-200	3.7	AAATTTGAACCCGTTTACTATT
		-132	3.9	TATCGCTACAGTGATCACAATT

Position: -171 Score: 4.7 Sequence: TTTTGTGATTATAATCACTAAA Locus tag: SPA2057
	SPA2057	-171	4.7	TTTTGTGATTATAATCACTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagB
Ortholog function: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Escherichia coli str. K-12 substr. MG1655	b0678	-212	4.3	AAATTTAATTCGTATCGCAAAT
		-178	4.6	TTTTGTGAGTTTTGTCACCAAA
Salmonella typhimurium LT2	STM0684	-205	3.7	AAAATTAATTCGCCTCGCAAAT
		-171	4.7	TTTTGTGATTATAATCACTAAA
Citrobacter koseri ATCC BAA-895	CKO_02486	-218	3.8	AAAATTAATTCGTATCGCAAAT
		-184	5.2	TTTTGTGATTTGAATCACCAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00699	-217	3.8	AAAATTAATTCGTATCGCAAAT
		-183	5	TTTTGTGATAATTATCACCAAA
Enterobacter sp. 638	Ent638_1193	-218	3.8	AAAATTAATTCGTATCGCAAAT
		-184	4.6	TTTTGTGAGTTTTGTCACCAAA
Erwinia amylovora ATCC 49946	EAM_1147	-195	4.9	ATATGTGATTAAAGTCACCTTA
Yersinia pestis KIM	y1202	-214	5.1	TTTTGTGATAAATATCACCAAA
Serratia proteamaculans 568	Spro_1227	-194	5.3	TTTTGTGATTTACATCACCAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1326	-180	5	TTATGTGATAAAAATCACCAAA
Edwardsiella tarda EIB202	ETAE_2617	-190	5	ATTTGTGATAACTATCACCAAT
Proteus mirabilis HI4320	PMI0454	-217	4.9	ATTTGTGATTAAAGTCACCTAT

Position: -87 Score: 4 Sequence: AAATGTTAACAAACACACATAA Locus tag: SPA2075
	SPA2075	-87	4	AAATGTTAACAAACACACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnH2
Ortholog function: glutamate and aspartate transporter subunit
Salmonella typhimurium LT2	STM0665	-87	4	AAATGTTAACAAACACACATAA

Position: -92 Score: 4.2 Sequence: AAGTGTGATTTTCGTCCCCATA Locus tag: SPA2098
	SPA2098	-92	4.2	AAGTGTGATTTTCGTCCCCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybeD
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b0631	-94	3.6	AAGTGTAATTTCCGTCCCCATA
Salmonella typhimurium LT2	STM0636	-93	4.2	AAGTGTGATTTTCGTCCCCATA
		-35	3.9	AGTTGTTATTTTTTTTACGTAA
Citrobacter koseri ATCC BAA-895	CKO_02527	-91	4.4	AAGTGTGATTTCCATCCCCATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00663	-97	4.4	AAGTGTGATTTCCATCCCCATA
Enterobacter sp. 638	Ent638_1166	-90	4.4	AAGTGTGATTTCCATCCCCATA
Yersinia pestis KIM	y1174	-146	4.2	TATTGTGATTAATCTTATATTG

Position: -114 Score: 4.3 Sequence: TAACGCGATATTTATCACTTTT Locus tag: SPA2105
	SPA2105	-114	4.3	TAACGCGATATTTATCACTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cspE
Ortholog function: cold shock protein E
Escherichia coli str. K-12 substr. MG1655	b0623	-114	4	TAACGCGACTTTTATCACTTTT
Salmonella typhimurium LT2	STM0629	-114	4.3	TAACGCGATATTTATCACTTTT
Citrobacter koseri ATCC BAA-895	CKO_02534	-21	4.3	TAACGCGATATTTATCACTTTT
Enterobacter sp. 638	Ent638_1159	-114	3.8	TAACGCGACTTTTGTCACTTTT
Erwinia amylovora ATCC 49946	EAM_1116	-113	3.6	AAAAACGATATTTATCACTTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1294	-113	3.9	TTTAGCGACTTTTATCACTTTT

Position: -141 Score: 3.8 Sequence: GAATGTGAACTAAATCACTTCA Locus tag: SPA2118
	SPA2118	-141	3.8	GAATGTGAACTAAATCACTTCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rnk
Ortholog function: Regulator of nucleoside diphosphate kinase
Escherichia coli str. K-12 substr. MG1655	b0610	-140	3.8	GAATGTGACGCAAATCACTTCA
Salmonella typhimurium LT2	STM0616	-141	3.8	GAATGTGAACTAAATCACTTCA
Citrobacter koseri ATCC BAA-895	CKO_02549	-141	3.9	GAATGTGAGCTAAATCACTTCA
Enterobacter sp. 638	Ent638_1148	-187	4.1	AAATCTGAGAACGATCACGTTT
		-140	3.8	GAATGTGACATTCATCACTTCA
Serratia proteamaculans 568	Spro_4382	-170	3.7	CTTCGTGATCGGGATCTCTTTC
		-67	3.8	TTTTGTGCTGTTTTTCCGAATT
Edwardsiella tarda EIB202	ETAE_0492	-145	4.4	ATTTGTGAGCCAGCTCTCTTTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4046	-127	3.7	GTTCGTGATCATGATCTCTTTA

Position: -99 Score: 3.8 Sequence: AATTGAGACTTCCTTCAAACAC Locus tag: SPA2229
	SPA2229	-99	3.8	AATTGAGACTTCCTTCAAACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fsr
Ortholog function: fosmidomycin resistance protein
Escherichia coli str. K-12 substr. MG1655	b0479	-65	3.7	TAGTCTGGTAATAATCACAAAT
Salmonella typhimurium LT2	STM0493	-100	3.8	AATTGAGACTTCCTTCAAACAC
Citrobacter koseri ATCC BAA-895	CKO_02670	-102	3.8	AATTGAGACTTCCTTCAAACAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00460	-197	3.8	AATTGCGACTTCCTTCAAACCT
Enterobacter sp. 638	Ent638_0958	-92	4	AATTGCGACTTTCCTCAAATCT
Serratia proteamaculans 568	Spro_1146	-100	4.7	TTTTGCGATGTGCGTCAAATTA

Position: -97 Score: 4.4 Sequence: AGCAGTGATATAGATCACATAC Locus tag: SPA2250
	SPA2250	-97	4.4	AGCAGTGATATAGATCACATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: maa
Ortholog function: maltose O-acetyltransferase
Escherichia coli str. K-12 substr. MG1655	b0459	-97	4.8	CTATGTGATCTTTATCACACAG
Salmonella typhimurium LT2	STM0472	-97	4.7	AACAGTGATATAGATCACATAG
Citrobacter koseri ATCC BAA-895	CKO_02692	-101	4.6	TCTCGTGATTTAGATCACATCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00440	-100	4.7	CTTTGTGATAGACATCACATCA
Enterobacter sp. 638	Ent638_0939	-98	4.3	TGCTGTGACTCTGATCACATCA

Position: -129 Score: 4 Sequence: ATATGTGAAACAAGACATATTT Locus tag: SPA2310
	SPA2310	-129	4	ATATGTGAAACAAGACATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tsx
Ortholog function: Nucleoside-specific channel-forming protein Tsx precursor
Escherichia coli str. K-12 substr. MG1655	b0411	-250	3.7	TTTTGTTACTCTGCTTACATCA
		-129	3.9	AACTGTGAAACGAAACATATTT
Salmonella typhimurium LT2	STM0413	-129	4	ATATGTGAAACAAGACATATTT
Citrobacter koseri ATCC BAA-895	CKO_02750	-131	3.7	ATCTGTGAAACAAGACATATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00363	-131	3.8	TTATGTGAAACAACACGTATTT
Enterobacter sp. 638	Ent638_0879	-124	4.1	ATATGTGAAACAACACATATTT
Erwinia amylovora ATCC 49946	EAM_2589	-218	5.3	ATTTGTGATAAAAATCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3796	-172	5.5	TTATGTGATTAAAATCACATAA
Edwardsiella tarda EIB202	ETAE_2935	-245	4.6	TAATTTGATGAGAATCTCAATT

Position: -139 Score: 5.4 Sequence: TAATGTGACATGTTTCACAAAA Locus tag: SPA2341
	SPA2341	-139	5.4	TAATGTGACATGTTTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: idnD
Ortholog function: L-idonate 5-dehydrogenase
Citrobacter koseri ATCC BAA-895	CKO_02795	-140	5.4	TAATGTGACATGTTTCACAAAT

Position: -82 Score: 5.6 Sequence: TAATGTGATTTACATCACACAT Locus tag: SPA2525
	SPA2525	-82	5.6	TAATGTGATTTACATCACACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: raiA
Ortholog function: stationary phase translation inhibitor and ribosome stability factor
Escherichia coli str. K-12 substr. MG1655	b2597	-81	4.8	TTATGAGATTTTCATCACACAT
Citrobacter koseri ATCC BAA-895	CKO_03918	-40	5.2	TAATGTGATTTAAATCACGCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02919	-88	5.6	AAATGTGATTTATATCACACAT
Enterobacter sp. 638	Ent638_3076	-81	5.4	ATGTGTGATTTAGATCACACAT
Erwinia amylovora ATCC 49946	EAM_2617	-83	5.2	AAATGTGATTTCAATCACGATT
Serratia proteamaculans 568	Spro_0882	-83	4.8	ATACGTGATTTTCATCACGCAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3349	-86	4	AAAAGCGATCAATCTCACGCTT
Edwardsiella tarda EIB202	ETAE_2834	-82	3.8	ATCCGTGATTTTCCTCTCACAC
Proteus mirabilis HI4320	PMI0391	-82	4.6	AAAAGTGATCTTGATCATGTTT
Photorhabdus luminescens subsp. laumondii TTO1	plu1266	-87	5.1	AATAGTGATTTAGATCACCTTT

Position: -71 Score: 3.9 Sequence: TTTTGTGGTATGGTTTAAACAT Locus tag: SPA2529
	SPA2529	-71	3.9	TTTTGTGGTATGGTTTAAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroF
Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase
Salmonella typhimurium LT2	STM2670	-71	3.9	TTTTGTGGTATGGTTTAAACAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02923	-159	3.8	TATTGTTATACGCATCGCGCCA
Edwardsiella tarda EIB202	ETAE_2837	-117	3.8	ATGTACGATATTGTTTACATAT
Proteus mirabilis HI4320	PMI0387	-214	4.5	TTATTTTATCTTAGTCACATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu1262	-262	3.6	TGTTTTGATATTGATTTTATTT

Position: -182 Score: 4.3 Sequence: AAGTGTTATTATGATCGCAAAA Locus tag: SPA2689
	SPA2689	-182	4.3	AAGTGTTATTATGATCGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mltB
Ortholog function: membrane-bound lytic murein transglycosylase B
Escherichia coli str. K-12 substr. MG1655	b2701	-184	4.6	AAGTGTTATTTTGATCGCAAAA
Salmonella typhimurium LT2	STM2831	-182	4.4	AAGTGTTATTGTGATCGCAAAA
Citrobacter koseri ATCC BAA-895	CKO_04055	-184	4.5	AAGTGTTATTTTGATCTCAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03036	-296	4.3	AAGTGTTAAATGGATCGCAAAA
Serratia proteamaculans 568	Spro_3399	-136	4.1	TTCTGTGCTGCCCGTCACGTTT

Position: -93 Score: 4.3 Sequence: TTTTGCGATCATAATAACACTT Locus tag: SPA2690
	SPA2690	-93	4.3	TTTTGCGATCATAATAACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: srlA
Ortholog function: PTS system, glucitol/sorbitol-specific IIC component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655	b2702	-93	4.4	TTTTGCGATCAAAATAACACTT
Salmonella typhimurium LT2	STM2832	-93	4.3	TTTTGCGATCACAATAACACTT
Citrobacter koseri ATCC BAA-895	CKO_04056	-93	4.3	TTTTGAGATCAAAATAACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03037	-92	4.6	TTTTGCGATCCATTTAACACTT
Serratia proteamaculans 568	Spro_3569	-110	4.9	AATTGTGATCTATTTAAAACAA

Position: -90 Score: 4 Sequence: TTTTGTGAAACAACTCACCGCA Locus tag: SPA2775
	SPA2775	-90	4	TTTTGTGAAACAACTCACCGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygbJ
Ortholog function: D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)
Escherichia coli str. K-12 substr. MG1655	b2736	-90	4.9	TTATGTGAATCAGATCACCATA
Salmonella typhimurium LT2	STM2918	-90	4	TTTTGTGAAACAACTCACCGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01605	-91	5	ATTCGTGATAACTCTCACATAT
Erwinia amylovora ATCC 49946	EAM_1106	-90	4.4	TGATGTGAAGTTTATCACTAAT
Serratia proteamaculans 568	Spro_1492	-92	4.1	AATTGTGACAACGATCGCTGAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4327	-92	4.5	TTATGTGATAAAAATCACCACA
Edwardsiella tarda EIB202	ETAE_1922	-93	3.9	ATTTGTGAGGATAAACACGGTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2507	-147	3.8	ATAAATAATATAAATCAAATAA
		-90	3.7	GAATGTGATAACCATCGTGTAT

Position: -128 Score: 4 Sequence: TGCGGTGAGTTGTTTCACAAAA Locus tag: SPA2776
	SPA2776	-128	4	TGCGGTGAGTTGTTTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygbI
Ortholog function: Hypothetical transcriptional regulator ygbI
Escherichia coli str. K-12 substr. MG1655	b2735	-166	3.7	TTGTTTGATATTGTGAATATAA
		-127	5.2	TATGGTGATCTGATTCACATAA
Salmonella typhimurium LT2	STM2919	-128	4	TGCGGTGAGTTGTTTCACAAAA
		-87	3.6	TTTTGTGAAGGCAATCCTCATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01606	-271	3.6	TAATGTGATTTAATGATAGAAT
		-230	4.7	ATATGTGAGAGTTATCACGAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_pKPN4p07051	-233	3.6	TAATGTGATTTAATGATAGAAT
		-192	4.7	TTATGTGAGAGTTATCACGAAT
Erwinia amylovora ATCC 49946	EAM_1104	-238	4.5	ATTAGTGATAAACTTCACATCA
Serratia proteamaculans 568	Spro_1493	-211	3.9	ATCAGCGATCGTTGTCACAATT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4325	-267	4.8	TGTGGTGATTTTTATCACATAA
Edwardsiella tarda EIB202	ETAE_1921	-132	3.9	AACCGTGTTTATCCTCACAAAT

Position: -176 Score: 4.2 Sequence: ATTTGAGATCGGGATCACTGAT Locus tag: SPA2834
	SPA2834	-176	4.2	ATTTGAGATCGGGATCACTGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdaC
Ortholog function: Serine transporter
Escherichia coli str. K-12 substr. MG1655	b2796	-179	4.2	ATTTGAGATCAAGATCACTGAT
Salmonella typhimurium LT2	STM2970	-176	4.2	ATTTGAGATCGGGATCACTGAT
Citrobacter koseri ATCC BAA-895	CKO_04152	-176	4.1	ATTTGGGATCGCGATCACTGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03139	-158	4.2	ATTTGAGATCGCGATCACTGAT
Enterobacter sp. 638	Ent638_3249	-176	4.1	ATTTGGGATCAGGATCACTGAT
Erwinia amylovora ATCC 49946	EAM_1294	-300	3.6	ATTTGTTAAAAATCGCAAAAAA
		-180	3.9	AAATGTGATTCCGATCACCGGC
Yersinia pestis KIM	y2862	-286	4.3	AATTGAGATCACGATCACGGTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3158	-195	3.7	TTCTGTGATCGCCTCAATATTA
Proteus mirabilis HI4320	PMI0672	-283	4.3	ATTTGAGATGGTGATCACGGTA

Position: -157 Score: 4.8 Sequence: TTAATTGATGTGTATCACAAAA Locus tag: SPA2838
	SPA2838	-157	4.8	TTAATTGATGTGTATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fucA
Ortholog function: L-fuculose phosphate aldolase
Escherichia coli str. K-12 substr. MG1655	b2800	-144	4.1	TTAGTTGAACCAGGTCACAAAA
		-54	4	TAGTGTGAAAGGAACAACATTA
Salmonella typhimurium LT2	STM2974	-157	4.8	TTAATTGATGTGAATCACAAAA
Citrobacter koseri ATCC BAA-895	CKO_04159	-144	4.7	TTAATTGATGCGTATCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03151	-155	4.4	ATAATTGACGCGGCTCACAAAA
Edwardsiella tarda EIB202	ETAE_0293	-175	4.2	AGTCTTGATGACGGTCACAAAA

Position: -207 Score: 4.7 Sequence: TAAAGTGATGATAATCACAGAA Position: -167 Score: 4.9 Sequence: AAATGTGACCGCCATCATATTA Locus tag: SPA2839
	SPA2839	-207	4.7	TAAAGTGATGATAATCACAGAA
		-167	4.9	AAATGTGACCGCCATCATATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fucP
Ortholog function: L-fucose permease
Escherichia coli str. K-12 substr. MG1655	b2801	-207	4.9	TAAAGTGATGGTAGTCACATAA
		-167	4.5	AAGTGTGACCGCCGTCATATTA
Citrobacter koseri ATCC BAA-895	CKO_04160	-219	5	TAAAGTGATGATAATCACATAA
		-179	4.8	AAATGTGACCACCATCATATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03152	-260	4.7	TAAAGTGACAATAATCACATAA
		-220	4.6	AAGTGTGACCATCATCATATTA

Position: -85 Score: 4.7 Sequence: TAATGAGATCGCGATCGCATTT Locus tag: SPA2853
	SPA2853	-85	4.7	TAATGAGATCGCGATCGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mltA
Ortholog function: membrane-bound lytic murein transglycosylase A
Salmonella typhimurium LT2	STM2988	-104	3.7	ATTTTTAAACGAATTTACATAA
		-85	4.7	TAATGAGATCGCGATCGCATTT

Position: -271 Score: 4 Sequence: TTTTATGATCTCATTAGCATAG Position: -131 Score: 4.9 Sequence: AAGTGTAATATCCATCACATAT Locus tag: SPA2883
	SPA2883	-271	4	TTTTATGATCTCATTAGCATAG
		-131	4.9	AAGTGTAATATCCATCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araE
Ortholog function: sugar transporter
Escherichia coli str. K-12 substr. MG1655	b2841	-131	4.4	AATTGGAATATCCATCACATAA
Salmonella typhimurium LT2	STM3016	-271	4	TTTTATGATCTCATTAGCATAG
		-131	4.9	AAGTGTAATATCCATCACATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03264	-191	4.4	AAGTTTAATGTCCATCACAAAA
Enterobacter sp. 638	Ent638_3294	-209	3.7	CGAGATGACATCGATCACATTT
		-130	4.1	AATTGGAATATCCATCACAGAA

Position: -92 Score: 4.5 Sequence: CTTTGTGATAAAACTCACTTTT Locus tag: SPA2886
	SPA2886	-92	4.5	CTTTGTGATAAAACTCACTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqeF
Ortholog function: Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Escherichia coli str. K-12 substr. MG1655	b2844	-91	4.6	CTTTGTGATAAAAATCACTTTT
Salmonella typhimurium LT2	STM3019	-92	4.5	CTTTGTGATAAAACTCACTTTT
Citrobacter koseri ATCC BAA-895	CKO_04222	-92	4.6	CTTTGTGATAAAACTCACCATT

Position: -218 Score: 4.5 Sequence: TTTGGTGACATGTATCACGTTT Locus tag: SPA2933
	SPA2933	-218	4.5	TTTGGTGACATGTATCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: serA
Ortholog function: D-3-phosphoglycerate dehydrogenase
Escherichia coli str. K-12 substr. MG1655	b2913	-210	4.1	TTTGGTGACATGTGTCACGCTT
Salmonella typhimurium LT2	STM3062	-217	4.5	TTTGGTGACATGTATCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03348	-214	4.6	TTTGGTGACTTCTGTCACATTT
Enterobacter sp. 638	Ent638_3332	-215	4.1	TTCGGTGACTTGTATCACGTTT
Yersinia pestis KIM	y3301	-126	4.8	TTTGGTGATATATATCACATTC
Serratia proteamaculans 568	Spro_3923	-215	4.4	TTTGGTGACATATGTCACATTG
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3905	-214	3.9	TTTGGTACTTAATATCACATTT
Proteus mirabilis HI4320	PMI2031	-210	4	TTCAGTGATATATATCACACGA
Photorhabdus luminescens subsp. laumondii TTO1	plu3605	-207	4.4	TTTAGTGATATATTTCATATCT
		-178	4.2	TTATTTGATCTAAATCCTAATT
		-105	4.4	TTATGTGATGGGAATAGCAATC

Position: -213 Score: 5 Sequence: AAATGTGATGCAGGTCAGATAA Locus tag: SPA2941
	SPA2941	-213	5	AAATGTGATGCAGGTCAGATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: epd
Ortholog function: D-erythrose 4-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655	b2927	-213	4.7	AAGTGTGATGTGAGTCAGATAA
Salmonella typhimurium LT2	STM3070	-213	5	AAATGTGATGCAGGTCAGATAA
Citrobacter koseri ATCC BAA-895	CKO_04297	-213	4.8	AAGTGTGATGCAGGTCAGATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03356	-213	4.8	AAATGTGATGTGAGTCATATAG
Enterobacter sp. 638	Ent638_3340	-215	4.5	AAATGTGACGCAAGTCATATAG
Erwinia amylovora ATCC 49946	EAM_2813	-208	4.1	TTTTGTGACGCAGATCGAAAGT
Yersinia pestis KIM	y3309	-216	3.7	AATTGTGCCCTTTTTCAGGGAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3913	-194	4.1	TTTTATGACGCAGGTCACTCTT
Edwardsiella tarda EIB202	ETAE_2958	-233	4.9	AATTGTGATGCAATGCACGTTT
Proteus mirabilis HI4320	PMI0241	-253	4.4	AAATGTTAACAAGAGCACATTT

Position: -84 Score: 4.6 Sequence: CATTGTGATTAGCCTCACATCT Locus tag: SPA2954
	SPA2954	-84	4.6	CATTGTGATTAGCCTCACATCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: galP
Ortholog function: sugar transporter
Escherichia coli str. K-12 substr. MG1655	b2943	-156	3.6	TATGATGATATAACTCAATTAT
		-82	4.9	TGATGTGATTTGCTTCACATCT
Salmonella typhimurium LT2	STM3091	-83	4.6	CATTGTGATTAGCCTCACATCT
Citrobacter koseri ATCC BAA-895	CKO_04318	-83	5.3	TAACGTGATTCGAATCACATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03376	-84	3.8	AGCCGTGATTATAGTCACGTTT
Enterobacter sp. 638	Ent638_3347	-171	3.9	TATTGGGATGCACATCAACTCT
		-102	3.7	TAGTGTAACCGATTACACCAAT
		-84	5.3	CAATGTGATTTATCTCACATAT
Erwinia amylovora ATCC 49946	EAM_2827	-152	4.1	TCATGTGATCTGTCGCACAGTC
Serratia proteamaculans 568	Spro_1160	-276	4.5	TGGTGTGATATCGGTTACATTT
		-100	3.6	TTGTGTAATCGTTTCCACTAAT
		-82	4.6	TAATGTGATCGCACTCACTTAC
Edwardsiella tarda EIB202	ETAE_2966	-275	3.7	CAAAGTGAAAACGATTACATTT
		-61	4.5	TTATGTGATCATGCGCACTTTA

Position: -125 Score: 4.3 Sequence: TTTTGTTATCCATCTCTAAAAA Locus tag: SPA2969
	SPA2969	-125	4.3	TTTTGTTATCCATCTCTAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ansB
Ortholog function: periplasmic L-asparaginase II
Escherichia coli str. K-12 substr. MG1655	b2957	-125	4	TTTTGTTACCTGCCTCTAACTT
Salmonella typhimurium LT2	STM3106	-125	4.3	TTTTGTTATCCATCTCTAAAAA
Citrobacter koseri ATCC BAA-895	CKO_04332	-125	3.6	TTTTGATATCCATCTCTAAAAA
Proteus mirabilis HI4320	PMI0708	-81	3.6	ATTCGTTCTATTTATCACGGAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1616	-76	3.8	AAGTCTGGTATGTATCACAGAT

Position: -166 Score: 4 Sequence: AAGTGTTAACTCCGTCACCATT Locus tag: SPA2976
	SPA2976	-166	4	AAGTGTTAACTCCGTCACCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nupG
Ortholog function: Nucleoside permease NupG
Escherichia coli str. K-12 substr. MG1655	b2964	-166	5.2	AAATGTTATCCACATCACAATT
		-116	3.8	TTATTTGCCACAGGTAACAAAA
Salmonella typhimurium LT2	STM3113	-166	3.9	AAGTGTTAACTCCGTCACCCTT
		-116	3.6	ATATTTGTCACAGGTAACAAAA
		-50	3.6	AAATGTGCCTTTTAAAACATTC
Citrobacter koseri ATCC BAA-895	CKO_04339	-166	3.9	AAGTGTTAACTCCATCACTCTT
		-116	3.6	ATATTTGTCACAGGTAACAAAA
		-50	3.6	AAATGTGCCTTTTAAAACATTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03396	-49	4.2	TAATGTTATTTTAAAAACATAA
Enterobacter sp. 638	Ent638_3369	-163	4.5	AAACGTTATTTGCATCACAATC
		-114	3.7	TTTTTTGCGGGAGGTAACAAAA

Position: -205 Score: 4.3 Sequence: AAAATTGACGCAGATCAAATAA Position: -155 Score: 4.5 Sequence: ATTTGTGATTTGGTTATCCAAT Locus tag: SPA3003
	SPA3003	-205	4.3	AAAATTGACGCAGATCAAATAA
		-155	4.5	ATTTGTGATTTGGTTATCCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxuA
Ortholog function: Mannonate dehydratase (EC 4.2.1.8)
Escherichia coli str. K-12 substr. MG1655	b4322	-271	3.8	TGTTGCGATGAATGTCACATCC
		-186	4.5	TCTTGTGATGTGGTTAACCAAT
Salmonella typhimurium LT2	STM3135	-205	4.3	AAAATTGACACAGATCAAATAA
		-155	4.6	ATTTGTGATTTGGTTAGCCAAT
Citrobacter koseri ATCC BAA-895	CKO_00609	-115	3.9	GATTGTGAGCTGGATCAATCAA
Enterobacter sp. 638	Ent638_2767	-116	3.9	TTCTGTGAGTTGGATCAATCAA
Serratia proteamaculans 568	Spro_3238	-167	3.9	AACCGTGAAGTGGATCAACCAA
		-48	4.1	AATCTTGATCACCACCACAATA
Edwardsiella tarda EIB202	ETAE_2289	-188	4.2	AATCGTGAGGCGGATCAACCAA

Position: -228 Score: 3.3 Sequence: TCGCGTGATAATTTTCATGCTT Position: -184 Score: 4.2 Sequence: TCATGTGACCCATATCTCCTTA Position: -123 Score: 4.2 Sequence: TATTGTGATTTTGCGCATTAAA Locus tag: SPA3065
	SPA3065	-228	3.3	TCGCGTGATAATTTTCATGCTT
		-184	4.2	TCATGTGACCCATATCTCCTTA
		-123	4.2	TATTGTGATTTTGCGCATTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glgS
Ortholog function: glycogen synthesis protein GlgS
Escherichia coli str. K-12 substr. MG1655	b3049	-225	3.4	AATAGTTTCCTTGCTTACATTT
		-203	3.4	ATCTGTGTTAATAATAACACAG
		-124	3.8	AAGTGTGATCGGGGACAATATA
Salmonella typhimurium LT2	STM3197	-222	3.3	TCGCGTGATAATTTTCATGCTT
		-178	4.2	TCATGTGACCCATATCTCCTTA
		-117	4.2	TATTGTGATTTTGCGCATTAAA
Citrobacter koseri ATCC BAA-895	CKO_04437	-118	3.4	AAGTGTGATGTCAGGCAACTGA

Position: -105 Score: 4 Sequence: AATTGCGATCCAGAGCAATTTT Locus tag: SPA3085
	SPA3085	-105	4	AATTGCGATCCAGAGCAATTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aer
Ortholog function: aerotaxis sensor receptor, senses cellular redox state or proton motive force
Escherichia coli str. K-12 substr. MG1655	b3072	-104	5	AATTGCGATCTAAATCAAATTA
Salmonella typhimurium LT2	STM3217	-220	3.6	AAAGGTGAGCCAGGGCAGATTT
		-105	4	AATTGCGATCCAGAGCAATTTT
Citrobacter koseri ATCC BAA-895	CKO_04485	-290	3.9	ATTGGTGATGTTTTGCGCAATG
		-105	5	AATTGCGATCTAAATCAAATTT
Enterobacter sp. 638	Ent638_3527	-106	4.5	AATTGCGATCTGGATCAATTTT

Position: -113 Score: 4.3 Sequence: TTTTTTGAATCCCATCACAATC Locus tag: SPA3087
	SPA3087	-113	4.3	TTTTTTGAATCCCATCACAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadH
Ortholog function: 2,4-dienoyl-CoA reductase [NADPH] (2,4-dienoyl coenzyme A reductase)
Escherichia coli str. K-12 substr. MG1655	b3081	-112	3.9	CTTTTTGAATCCCATCACAAAC
Salmonella typhimurium LT2	STM3219	-113	4.3	TTTTTTGAATCCCATCACAATC
Citrobacter koseri ATCC BAA-895	CKO_04487	-113	4.3	TTTTTTGAATCCCATCACAATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03510	-111	3.9	TTCTTTGAATCCCATCACAATC
Enterobacter sp. 638	Ent638_3539	-111	3.9	ATCTTTGAATCCCATCACATTC
Erwinia amylovora ATCC 49946	EAM_0507	-169	3.8	AACCGTGACTGAGATCGCTAAA
Yersinia pestis KIM	y3589	-131	4	ATTCATGACGGCTATCACAATC
Serratia proteamaculans 568	Spro_4309	-126	4.2	ATTCATGACATCTATCACATTC
Proteus mirabilis HI4320	PMI3702	-213	3.8	TATTATTATATGATTAAAAAAT
		-103	3.8	TTCCATGATTAAGATCACAACT
Photorhabdus luminescens subsp. laumondii TTO1	plu3990	-161	4.3	TTTCATGACCTTCATCACATTC

Position: -188 Score: 3.9 Sequence: TTTTTTGATTGAAATCAGGCTA Position: -83 Score: 5.1 Sequence: ATTTGTGAGTGGTCTCACATAA Locus tag: SPA3114
	SPA3114	-188	3.9	TTTTTTGATTGAAATCAGGCTA
		-83	5.1	ATTTGTGAGTGGTCTCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tdcA
Ortholog function: Threonine catabolic operon transcriptional activator TdcA
Escherichia coli str. K-12 substr. MG1655	b3118	-225	4	TGATGTTATCGCCATAAAATAT
		-82	4.7	ATTTGTGAGTGGTCGCACATAT
Salmonella typhimurium LT2	STM3245	-188	3.9	TTTTTTGATTGAAATCAGGCTA
		-83	4.7	ATTTGTGAGTGGTCGCACATAA
Citrobacter koseri ATCC BAA-895	CKO_04518	-225	4.3	ATATGTTATCGCCATAAAATAT
		-187	3.9	TTTTTTGACAAAAATCATGATA
		-82	4.6	ATTTGTGAGTAGTCGCACATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02296	-82	4.6	CTTTGTGAGAGCTCTCACATAA
		-54	3.7	AATTGCGATTTGTTACACTTTC
Enterobacter sp. 638	Ent638_3565	-82	3.9	ATTTGTGAGTAACAGCACATCC

Position: -99 Score: 4.4 Sequence: TACTTTGAGCCGGTTCACACTT Locus tag: SPA3147
	SPA3147	-99	4.4	TACTTTGAGCCGGTTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: deaD
Ortholog function: ATP-independent RNA helicase
Salmonella typhimurium LT2	STM3280.S	-154	3.9	CTTTTTGATTGCCATCACCTTC
		-99	4.4	TACTTTGAGCCGGTTCACACTT
Citrobacter koseri ATCC BAA-895	CKO_04559	-103	3.9	CTTTTTGATTGCCATCACCTTC
		-48	4.4	TACTTTGAGCCGGTTCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03570	-154	3.8	TTTTTTGCTTGCCATCACCTTC
		-99	4.4	TACTTTGAGCCGGTTCACACAT
Enterobacter sp. 638	Ent638_3599	-154	4.1	TCTTATGATTGCCATCACCTTA
		-99	4.4	TACTTTGAGCCGGTTCACACTT
Erwinia amylovora ATCC 49946	EAM_3065	-99	4.8	TAATTTGAGCCGGTTCACACTT
Yersinia pestis KIM	y0696	-96	4.8	TAATTTGAGCCGGTTCACACTT
Serratia proteamaculans 568	Spro_0495	-96	4.8	TAATTTGAGCCGGTTCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0718	-96	4.4	CAATTTGAGCCGGTTCACACTT
Edwardsiella tarda EIB202	ETAE_0411	-96	4.8	TAATTTGAGCCGGTTCACACTT
Proteus mirabilis HI4320	PMI3424	-80	5	TAATTTGAGCCAGTTCACATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4523	-95	5	TAATTTGAGCCAGTTCACATTT

Position: -91 Score: 3.9 Sequence: ATTTGTTACATGAATCATTTAA Position: -69 Score: 3.6 Sequence: ATGTGTGAAGCGTAGCATTTTA Locus tag: SPA3194
	SPA3194	-91	3.9	ATTTGTTACATGAATCATTTAA
		-69	3.6	ATGTGTGAAGCGTAGCATTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: elbB
Ortholog function: sigma cross-reacting protein 27A (SCRP-27A)
Escherichia coli str. K-12 substr. MG1655	b3209	-91	3.7	ATTTGTTACATGAATCAGTTAA
		-69	4	ATGTGTGATGCGTACCATTTTT
Salmonella typhimurium LT2	STM3327	-91	3.9	ATTTGTTACATGAATCATTTAA
		-69	3.6	ATGTGTGAAGCGTAGCATTTTA
Citrobacter koseri ATCC BAA-895	CKO_04612	-92	3.7	TTTTGTTACATGAATCAGTTAA
		-70	3.6	ATGTGTGAAGCGCAGCATTTTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03618	-93	3.6	ATTTGTTACATGAATCAGTAAA
		-71	3.8	ATATGTGAAGCATAGCGAGTTA
Serratia proteamaculans 568	Spro_4341	-72	3.7	ATGTGTGATGTAGATTAGTGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0316	-72	3.7	ATGTGTGATGTAGATTAGTGTT
Proteus mirabilis HI4320	PMI3679	-174	4.1	TTTTTTGATTATCATTACATAG

Position: -288 Score: 3.7 Sequence: ATCTGTGCTACAGCACACTTTT Locus tag: SPA3198
	SPA3198	-288	3.7	ATCTGTGCTACAGCACACTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltB
Ortholog function: glutamate synthase, large subunit
Escherichia coli str. K-12 substr. MG1655	b3212	-199	4.2	AATTTTGCGCTAAAGCACATTT
Salmonella typhimurium LT2	STM3330	-288	3.7	ATCTGTGCTACAGCACACTTTT
Enterobacter sp. 638	Ent638_3656	-298	3.9	GATAGTGAGTCAGATCACACTC
Edwardsiella tarda EIB202	ETAE_0527	-278	4.9	AACTGTGATGCAGCCCACATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4009	-241	4	ATATTTGACCTGATTTATATTT

Position: -113 Score: 4.4 Sequence: TTTAGTGAAGCAGATCGCACTA Locus tag: SPA3207
	SPA3207	-113	4.4	TTTAGTGAAGCAGATCGCACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nanA
Ortholog function: N-acetylneuraminate lyase (EC 4.1.3.3)
Escherichia coli str. K-12 substr. MG1655	b3225	-115	4.6	TTTAGTGAAGCAGATCGCATTA
Salmonella typhimurium LT2	STM3339	-113	4.4	TTTAGTGAAGCAGATCGCACTA
Citrobacter koseri ATCC BAA-895	CKO_04629	-116	4.2	TTTAGTGAAGTAGATCGCACTC
Enterobacter sp. 638	Ent638_3661	-112	4.6	TTTAGTGAAGCAGATCGCATTA
Edwardsiella tarda EIB202	ETAE_1381	-141	4.5	TTTAGTGAACTAGATCGCACAA

Position: -60 Score: 5 Sequence: TTTTGTGATGAGGGTCACGAAA Locus tag: SPA3228
	SPA3228	-60	5	TTTTGTGATGAGGGTCACGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhcN
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b3238	-60	5.1	TTTTGTGATATGGGTCACGAAA
Salmonella typhimurium LT2	STM3361	-60	5	TTTTGTGATGAGGGTCACGAAA
Citrobacter koseri ATCC BAA-895	CKO_04644	-60	5	TTTTGTGATGAGGGTCACGAAA
Enterobacter sp. 638	Ent638_3673	-58	5	TTTTGTGATGAGGGTCACGAAA

Position: -166 Score: 5.4 Sequence: AAAAGTGATTTAGATCACATAA Locus tag: SPA3233
	SPA3233	-166	5.4	AAAAGTGATTTAGATCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhcR
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b3242	-167	5.4	AAAAGTGATTTAGATCACATAA
Salmonella typhimurium LT2	STM3366	-166	5.4	AAAAGTGATTTAGATCACATAA
Citrobacter koseri ATCC BAA-895	CKO_04650	-168	5.4	AAAAGTGATTTAGATCACATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03651	-116	5.2	AAAAGTGATTTAGATCACACAT
		-63	3.7	TATTGTTAGCTACATAATAAAC
Enterobacter sp. 638	Ent638_3679	-165	5.4	AAAAGTGATTTAGATCACATAT
Yersinia pestis KIM	y0179	-269	5.2	AAAAGTGATTTAGATCACACAT
Serratia proteamaculans 568	Spro_4392	-293	5.1	AAAAGTGATTTAGATCACAGAT
		-89	3.8	ATTTGTGGTGCGTGTCAGCTAA

Position: -37 Score: 5.3 Sequence: TTATGTGATCTAAATCACTTTT Locus tag: SPA3234
	SPA3234	-37	5.3	TTATGTGATCTAAATCACTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aaeR
Ortholog function: LysR-family transcriptional regulator
Escherichia coli str. K-12 substr. MG1655	b3243	-37	5.3	TTATGTGATCTAAATCACTTTT
Salmonella typhimurium LT2	STM3367	-37	5.3	TTATGTGATCTAAATCACTTTT
Citrobacter koseri ATCC BAA-895	CKO_04651	-37	5.3	ATATGTGATCTAAATCACTTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03652	-55	5.1	ATGTGTGATCTAAATCACTTTT
Enterobacter sp. 638	Ent638_3680	-37	5.3	ATATGTGATCTAAATCACTTTT
Erwinia amylovora ATCC 49946	EAM_3128	-37	5.3	AAATGTGATCTAAATCACTTTT
Yersinia pestis KIM	y0180	-55	5.1	ATGTGTGATCTAAATCACTTTT
Serratia proteamaculans 568	Spro_4393	-37	4.9	ATCTGTGATCTAAATCACTTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0276	-37	5.1	TAGTGTGATCTAAATCACTTTT
Edwardsiella tarda EIB202	ETAE_3129	-131	4.5	ATCTGTGACGCAAATCACTTTT

Position: -222 Score: 4.3 Sequence: TTGTGTGAAGTGATTCACATCC Locus tag: SPA3266
	SPA3266	-222	4.3	TTGTGTGAAGTGATTCACATCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yrdA
Ortholog function: carbonic anhydrase, family 3
Escherichia coli str. K-12 substr. MG1655	b3279	-220	3.8	TCCTGTGAAGTGTTTCACGTTG
Salmonella typhimurium LT2	STM3399	-222	4.3	TTGTGTGAAGTGATTCACATCC
Citrobacter koseri ATCC BAA-895	CKO_04691	-221	3.9	TCTTGTGAAGCGTTTCACTTTG
		-81	3.8	ATTTTTGATACCTGAAACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03680	-221	4.6	TTGTGTGAAGTGATTCACATCT
Enterobacter sp. 638	Ent638_3711	-222	4.6	TTGTGTGAAGTGATTCACATCT
		-47	3.6	TAATGCGATCAAAGTCTTCTAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3993	-105	3.6	TTACTCGATCCGTGTCACTTTT
Edwardsiella tarda EIB202	ETAE_3192	-235	4.1	TCCTGTGATGTTGTTCACATGT

Position: -188 Score: 3.9 Sequence: TAATGTGATGTCCTCTGCATAC Locus tag: SPA3331
	SPA3331	-188	3.9	TAATGTGATGTCCTCTGCATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhfA
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b3356	-187	4.2	TAATGTGACGTCCTTTGCATAC
Salmonella typhimurium LT2	STM3465	-188	3.9	TAATGTGATGTCCTCTGCATAC
Citrobacter koseri ATCC BAA-895	CKO_04775	-187	3.3	GAATGTGATGTCCTCTGCATAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03742	-188	3.5	TAATGTGAACTCCTCTGCATAC
Serratia proteamaculans 568	Spro_4579	-280	3.3	GGTTTTGAGGCGTGTCATAAAT

Position: -159 Score: 3.1 Sequence: TACATTGACGTACTGCATGTAT Locus tag: SPA3332
	SPA3332	-159	3.1	TACATTGACGTACTGCATGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: crp
Ortholog function: cyclic AMP receptor protein
Escherichia coli str. K-12 substr. MG1655	b3357	-154	3.3	TACATTGATGTACTGCATGTAT
		-136	3.3	GTATGCAAAGGACGTCACATTA
Salmonella typhimurium LT2	STM3466	-159	3.1	TACATTGACGTACTGCATGTAT
Citrobacter koseri ATCC BAA-895	CKO_04777	-160	3.1	TACATTGACGTACTGCATGTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03743	-158	3.3	TACATTGATGTACTGCATGTAT
Enterobacter sp. 638	Ent638_3784	-128	2.9	AAACATTACAGGCTGCAAACAT
Yersinia pestis KIM	y3956	-309	3	AATTTAGACTACCCTTTCATTT
Serratia proteamaculans 568	Spro_4580	-121	3.5	ATTTATGACACGCCTCAAAACC
Proteus mirabilis HI4320	PMI2820	-135	3.3	TATTATAATCTATTCCTTATTA

Position: -214 Score: 4.4 Sequence: TTTTGTGATGTATTTAAATAAT Position: -161 Score: 5.1 Sequence: TAATGTGATGTTTGTCACATCA Locus tag: SPA3338
	SPA3338	-214	4.4	TTTTGTGATGTATTTAAATAAT
		-161	5.1	TAATGTGATGTTTGTCACATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppiA
Ortholog function: Peptidyl-prolyl cis-trans isomerase ppiA precursor (EC 5.2.1.8)
Escherichia coli str. K-12 substr. MG1655	b3363	-204	4.2	TTTTGTGATCTGTTTAAATGTT
		-151	4.2	AGAGGTGATTTTGATCACGGAA
Salmonella typhimurium LT2	STM3472	-214	4.3	TTTTGTGATGCATTTAAATAAT
		-161	5.1	TAATGTGATGTTTGTCACATCA
Citrobacter koseri ATCC BAA-895	CKO_04785	-215	3.7	TTTAGTGATGTATTTAAATGTT
		-162	5.2	TAACGTGACATTGATCACATTA

Position: -137 Score: 5 Sequence: TGATGTGACAAACATCACATTA Locus tag: SPA3339
	SPA3339	-137	5	TGATGTGACAAACATCACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhfC
Ortholog function: Predicted purine nucleoside transporter, MFS superfamily
Salmonella typhimurium LT2	STM3473	-137	5	TGATGTGACAAACATCACATTA
		-84	3.8	ATTATTTAAATGCATCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03750	-140	5.3	AAGCGTGATGCAGATCACATTA
		-109	3.7	AAAGATAACCCATTTCACAATA
Enterobacter sp. 638	Ent638_3791	-206	4.8	AAAAGTGACTTAGATCACATTG
Serratia proteamaculans 568	Spro_2681	-82	4.3	AATTGTGAACCCGATCACTTCA

Position: -76 Score: 3.4 Sequence: GAATTTGATTTACATCAATAAG Locus tag: SPA3340
	SPA3340	-76	3.4	GAATTTGATTTACATCAATAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirB
Ortholog function: nitrite reductase (NAD(P)H) subunit
Escherichia coli str. K-12 substr. MG1655	b3365	-124	3.2	AAAATTTATACAAATCAGCAAT
		-76	3.4	GAATTTGATTTACATCAATAAG
Salmonella typhimurium LT2	STM3474	-76	3.4	GAATTTGATTTACATCAATAAG
Citrobacter koseri ATCC BAA-895	CKO_04789	-76	3.4	GAATTTGATTTACATCAATAAG
Enterobacter sp. 638	Ent638_3793	-76	3.3	GTATTTGATTTGCATCAATAAG
Yersinia pestis KIM	y3945	-75	3.7	CAAATTGATTTACATCAAGAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4079	-186	4.2	AAGCGTGCTATAGATCTCACTT
Proteus mirabilis HI4320	PMI1479	-129	3.5	TTTTGTGCACTTTATTAACAAT

Position: -165 Score: 3.4 Sequence: TTTTGTATTTTTTTTCATTTTA Position: -150 Score: 4.1 Sequence: CATTTTAATTGTTATCACAAAA Position: -144 Score: 3.6 Sequence: AATTGTTATCACAAAATCATTT Locus tag: SPA3342
	SPA3342	-165	3.4	TTTTGTATTTTTTTTCATTTTA
		-150	4.1	CATTTTAATTGTTATCACAAAA
		-144	3.6	AATTGTTATCACAAAATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirC
Ortholog function: nitrite transporter NirC
Escherichia coli str. K-12 substr. MG1655	b3367	-124	3.2	AAAATTTATACAAATCAGCAAT
		-76	3.4	GAATTTGATTTACATCAATAAG
Enterobacter sp. 638	Ent638_3795	-76	3.3	GTATTTGATTTGCATCAATAAG

Position: -54 Score: 3.5 Sequence: AACCGTGCGGTATGTCGCACAA Locus tag: SPA3359
	SPA3359	-54	3.5	AACCGTGCGGTATGTCGCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nudE
Ortholog function: ADP compounds hydrolase NudE (EC 3.6.1.-)
Escherichia coli str. K-12 substr. MG1655	b3397	-53	3.7	AAGCGTGTCCGATATCGCACAA
Citrobacter koseri ATCC BAA-895	CKO_04820	-54	4.1	AACCGTGCTGTATATCGCACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03768	-54	4	AAGCGTGTTGCGTATCGCACAA
Enterobacter sp. 638	Ent638_3810	-55	3.6	AACCGTGCGTCATATCGCACAA
Yersinia pestis KIM	y3923	-247	4.5	CAATGTGATCAAGTTCTAATAT
Serratia proteamaculans 568	Spro_4612	-135	4.4	CAATGTGATCAAGATCGGATTT
Edwardsiella tarda EIB202	ETAE_3268	-116	3.6	AAATATGAGCATCTGCGCACAA

Position: -290 Score: 3.5 Sequence: TTGTGCGACATACCGCACGGTT Position: -238 Score: 3.6 Sequence: TTATGTAACGTAATAAAAATTA Locus tag: SPA3360
	SPA3360	-290	3.5	TTGTGCGACATACCGCACGGTT
		-238	3.6	TTATGTAACGTAATAAAAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: igaA
Ortholog function: IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system
Escherichia coli str. K-12 substr. MG1655	b3398	-288	3.6	TTGTGCGATATCGGACACGCTT
		-123	3.8	TACTGTGATGTGCTTAATGATG
Salmonella typhimurium LT2	STM3495	-238	3.6	TTATGTAACGTAATAAAAATTA
Citrobacter koseri ATCC BAA-895	CKO_04821	-290	3.9	TTGTGCGATATACAGCACGGTT
		-238	3.7	TTATGTAACGTAGTAAAAATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03769	-282	3.8	TTGTGCGATACGCAACACGCTT
Enterobacter sp. 638	Ent638_3811	-287	3.7	TTGTGCGATATGACGCACGGTT
Yersinia pestis KIM	y3922	-186	3.7	TATTGTGACTGCGTTAGCTTTG

Position: -241 Score: 4 Sequence: GAATGCGATTACAGTCACATTA Position: -107 Score: 3.9 Sequence: AATCGTGATTTTGTCCAGATAC Locus tag: SPA3365
	SPA3365	-241	4	GAATGCGATTACAGTCACATTA
		-107	3.9	AATCGTGATTTTGTCCAGATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pck
Ortholog function: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Escherichia coli str. K-12 substr. MG1655	b3403	-240	4.2	GAATGCGATTCCACTCACAATA
		-137	4	TTTCGTGACAGGAATCACGGAG
Salmonella typhimurium LT2	STM3500	-241	4	GAATGCGATTACAGTCACATTA
		-107	3.9	AATCGTGATTTTGTCCAGATAC
Citrobacter koseri ATCC BAA-895	CKO_04825	-107	3.9	AATCGTGATTTTGTCCAGATAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03773	-242	3.7	GAAAGCGATTACATTCACATTT
		-138	3.7	CTTCGTGACAGGAGTCACCGTT
Enterobacter sp. 638	Ent638_3816	-241	4.1	GTATGCGATTACATTCACATTA
Yersinia pestis KIM	y3918	-130	4.2	ATTCGTGTTCCATCTCTCATAA
		-80	3.8	ATATTTGATAGCTATCGCTGTT
Serratia proteamaculans 568	Spro_4617	-80	4.1	ATATTTGATACCTATCGCGGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4106	-81	4	TTTTATGATTGCTATCGCGGTT
Edwardsiella tarda EIB202	ETAE_3277	-82	3.9	TTTTTTGATGACTATCTCGGTT
Proteus mirabilis HI4320	PMI3015	-131	4	ATTTGTGCATTAGTTCTCGTTA
Photorhabdus luminescens subsp. laumondii TTO1	plu0100	-86	3.8	TTTTTTGATAACTATCGCTGTT

Position: -236 Score: 4.1 Sequence: TAACATGACCTGTGTCTCATAA Locus tag: SPA3377
	SPA3377	-236	4.1	TAACATGACCTGTGTCTCATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntT
Ortholog function: gluconate transporter
Escherichia coli str. K-12 substr. MG1655	b3415	-236	4.3	TAATATGACCAACCTCTCATAA
Salmonella typhimurium LT2	STM3512	-236	4.1	TAACATGACCTGTGTCTCATAA
		-178	3.8	ATATGTTACCCGTATCATTCTT
		-37	3.2	TGACGTTACCCATAACAAAGTA
Citrobacter koseri ATCC BAA-895	CKO_04836	-236	4.2	TAACATGACCTGCCTCTCATAA
		-178	3.8	ATATGTTACCCGTATCATTCAT

Position: -143 Score: 4.3 Sequence: AATTGTGACAGAGTGCAAATTC Locus tag: SPA3380
	SPA3380	-143	4.3	AATTGTGACAGAGTGCAAATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: malT
Ortholog function: transcriptional regulator MalT
Escherichia coli str. K-12 substr. MG1655	b3418	-142	4.3	AATTGTGACACAGTGCAAATTC
Salmonella typhimurium LT2	STM3515	-143	4.3	AATTGTGACAGAGTGCAAATTC
Citrobacter koseri ATCC BAA-895	CKO_04840	-142	4.3	AATTGTGACAGAGTGCAAATTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03788	-142	4.4	ATTTGTGACATAGAGCAAATTC
Enterobacter sp. 638	Ent638_3831	-142	4.6	AATTGTGACAGAGTGCAAATTA
Yersinia pestis KIM	y3900	-202	4.6	AATTGTGATCCGTAGCAACTTA
Serratia proteamaculans 568	Spro_4637	-203	4	AAGTGTGATCAATAGCAATATA
Edwardsiella tarda EIB202	ETAE_3303	-212	3.8	AAATGTGATCAGCCGCAATTTC

Position: -104 Score: 4.7 Sequence: TAGAGTGATATGTATAACATTA Locus tag: SPA3383
	SPA3383	-104	4.7	TAGAGTGATATGTATAACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpE
Ortholog function: thiosulfate sulfurtransferase
Escherichia coli str. K-12 substr. MG1655	b3425	-95	4.7	TAGAGTGATATGTATAACATTA
Salmonella typhimurium LT2	STM3525	-104	4.7	TAGAGTGATATGTATAACATTA
Citrobacter koseri ATCC BAA-895	CKO_04844	-108	4.6	TAGAGTGATACATATAACATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03791	-107	4.3	TGAAGTGATGGGTGTAACATAT
Enterobacter sp. 638	Ent638_3834	-257	3.8	ATGTTCGATATCGCTCATAATA
		-196	4.6	TTGAGTGATAGAGATAACATAA
Erwinia amylovora ATCC 49946	EAM_3264	-134	3.9	ATGCGTGATGCCGATAACGTCT
Photorhabdus luminescens subsp. laumondii TTO1	plu0197	-102	3.6	TAACGTATTACTGATAACAAAT

Position: -116 Score: 4.4 Sequence: TAATGTTATACATATCACTCTA Locus tag: SPA3384
	SPA3384	-116	4.4	TAATGTTATACATATCACTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpD
Ortholog function: glycerol-3-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655	b3426	-116	4.4	TAATGTTATACATATCACTCTA
Salmonella typhimurium LT2	STM3526	-116	4.4	TAATGTTATACATATCACTCTA
Citrobacter koseri ATCC BAA-895	CKO_04845	-116	4.5	TAATGTTATATGTATCACTCTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03792	-119	3.7	ATATGTTACACCCATCACTTCA
		-58	3.7	TATAGTGAGCGATATCGAGCAT
Enterobacter sp. 638	Ent638_3835	-116	4.4	TTATGTTATCTCTATCACTCAA
		-55	4	TATTATGAGCGATATCGAACAT
Erwinia amylovora ATCC 49946	EAM_3265	-124	4	AGACGTTATCGGCATCACGCAT
Yersinia pestis KIM	y3891	-129	4.4	AAATGTTACCTCCATCACGCAT
Serratia proteamaculans 568	Spro_4642	-129	3.6	AACTGTTACCTCTATCACGCCT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4141	-144	4.3	TAATGTGACAACTATCATCATA
		-124	4.4	TATTGTTAGCTTCATCACGCAT
Edwardsiella tarda EIB202	ETAE_3312	-124	4.3	TTGTGTTATCCGCATCGCGTAA
Proteus mirabilis HI4320	PMI2930	-129	4.4	AATTGTTATTTATATCACGCAG

Position: -132 Score: 4.4 Sequence: AACTTTGAAGTAGCTCACACTT Locus tag: SPA3393
	SPA3393	-132	4.4	AACTTTGAAGTAGCTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntK
Ortholog function: gluconate kinase 1
Salmonella typhimurium LT2	STM3542	-132	4.4	AACTTTGAAGTAGCTCACACTT
Citrobacter koseri ATCC BAA-895	CKO_04991	-121	3.8	TTATGTGAACGGAATCCCCATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03896	-62	4	ATATGCAAACAACATCACAATT
Yersinia pestis KIM	y3829	-211	3.9	AGATGTGAGCCATATAACCTCT
Serratia proteamaculans 568	Spro_0141	-271	3.8	TTGTTTGCTGTTTCTCACAGTC
Photorhabdus luminescens subsp. laumondii TTO1	plu0303	-223	3.7	AAATGTGCGCATTGTCATGTTT

Position: -184 Score: 3.5 Sequence: AGACGTGCAGTAGCTCCCACTT Locus tag: SPA3409
	SPA3409	-184	3.5	AGACGTGCAGTAGCTCCCACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ugpB
Ortholog function: Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3)
Escherichia coli str. K-12 substr. MG1655	b3453	-182	3.6	ATCCGTGCCCCATCTCCCATTT
Salmonella typhimurium LT2	STM3557	-184	3.5	ATCCGTGCCGTAGCTCCCACTT
Citrobacter koseri ATCC BAA-895	CKO_04874	-185	3.3	TATTTTTCTGTCATTCGCGCAT
		-162	3.2	TCATGTTACCTCGCGAGCATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03813	-88	3.4	TATTTTTCTGTAATTCGAACAT
Enterobacter sp. 638	Ent638_3856	-162	3.5	AGTTATTATTCCCGCCACATTA
		-58	3.2	TCATGTTACCTCGCGAGCATAA
Erwinia amylovora ATCC 49946	EAM_3285	-171	3.9	GTGTGTGATGCCGTTAACACAG
Yersinia pestis KIM	y0434	-72	3.5	AAAACTGATTTATTTCGCTCAT
		-41	4.1	TTTTTTGATGTGAGCCACACAG
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2429	-145	3.5	TATCGCGATACAGTTCATCACT
Edwardsiella tarda EIB202	ETAE_3321	-63	3.4	CAATATGTTGTTTATCACTCAA

Position: -154 Score: 4.2 Sequence: TTATGTGAAGCATTTCATAGAC Locus tag: SPA3465
	SPA3465	-154	4.2	TTATGTGAAGCATTTCATAGAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhjE
Ortholog function: Inner membrane metabolite transport protein YhjE
Escherichia coli str. K-12 substr. MG1655	b3523	-155	4.5	TTATGTGAAGCATTTCATAGAA
Salmonella typhimurium LT2	STM3609	-154	4.2	TTATGTGAAGCATTTCATAGAC
Citrobacter koseri ATCC BAA-895	CKO_04963	-155	4	TTGTGTGAAGCATTTCATAGAC
		-94	3.7	TTATTTGAGCGAAATCCCGCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03874	-154	4.3	TTGTGTGAAGCATTTCATAGAA
Enterobacter sp. 638	Ent638_3920	-155	4.2	AACTGTGAAGCATTTCATAGAA
Erwinia amylovora ATCC 49946	EAM_3376	-134	3.6	AAATATGCCGTATTGAACATTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0769	-222	4.7	AATTGTGTGCGATCTCACATAT

Position: -145 Score: 4.1 Sequence: TTGTGCGAGCCAGCTCAAACTT Locus tag: SPA3470
	SPA3470	-145	4.1	TTGTGCGAGCCAGCTCAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dctA
Ortholog function: C4-dicarboxylate transport protein
Escherichia coli str. K-12 substr. MG1655	b3528	-143	4.1	TTGTGCGAGCCAGCTCAAACTT
Salmonella typhimurium LT2	STM3614	-145	4.1	TTGTGCGAGCCAGCTCAAACTT
Citrobacter koseri ATCC BAA-895	CKO_04970	-145	4	TTGTGCGAGCCAGCTCAAAGTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03878	-143	3.9	TTGTGCGAGTCAGCTCAAAGAT
Erwinia amylovora ATCC 49946	EAM_3380	-134	4.4	TGAAGTGATTCAGCTCATAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4362	-157	3.8	TGACGTGATTCAGCTCTTGTTT
Edwardsiella tarda EIB202	ETAE_3379	-155	3.6	TTATGCGTTTCAGCTCATAGAA
Photorhabdus luminescens subsp. laumondii TTO1	plu3205	-176	4.9	TTATGTGATCTATATCTTAAAA

Position: -260 Score: 3.9 Sequence: TTATGCGAAATTCATCACAGCA Position: -133 Score: 4.3 Sequence: TTTTGAGAGCCAGCGCACATTT Locus tag: SPA3512
	SPA3512	-260	3.9	TTATGCGAAATTCATCACAGCA
		-133	4.3	TTTTGAGAGCCAGCGCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylA
Ortholog function: Xylose isomerase (EC 5.3.1.5)
Escherichia coli str. K-12 substr. MG1655	b3565	-224	3.9	ATTTATGACCGAGATCTTACTT
		-134	4.2	TTTTGCGAGCGAGCGCACACTT
Salmonella typhimurium LT2	STM3661	-260	3.9	TTATGCGAAATTCATCACAGCA
		-133	4.4	TTTTGAGAGCCAGAGCACATTT
Citrobacter koseri ATCC BAA-895	CKO_05021	-214	4.1	AATTATGACCGAGATCGTACTT
		-122	4.2	TTTTGCGAGGCGGCGCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03929	-234	4.1	TTTTGCGAGCTGGCGCACGTTT
Enterobacter sp. 638	Ent638_0156	-231	3.8	ATTTATGACCGTGATCTGATTT
		-135	3.9	TTTTGGGAGCCAGCGCACGTTT
Yersinia pestis KIM	y4057	-220	4.6	TTATGAGATCTACACCACAATT
Serratia proteamaculans 568	Spro_0098	-222	3.9	TTTTATGATGGCGGTCATGCTT
		-129	4.6	TTATGAGATCTGTCGCACATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0097	-223	4.7	TTTTTTGATGCGGGTCATATTT
		-135	4.4	TTTTGCGACACAGCGCACATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2275	-251	4.6	ATTTATGAGATAAATCACACAA

Position: -306 Score: 3.7 Sequence: TTTCCTGATTTATTGCTCAATT Position: -251 Score: 4.4 Sequence: AAATGTGCGCTGGCTCTCAAAA Position: -249 Score: 3.7 Sequence: ATGTGCGCTGGCTCTCAAAAAA Position: -124 Score: 4.5 Sequence: TGCTGTGATGAATTTCGCATAA Position: 0 Score: 4 Sequence: ATGTTTGATAAACGTCACCGTA Locus tag: SPA3513
	SPA3513	-306	3.7	TTTCCTGATTTATTGCTCAATT
		-251	4.4	AAATGTGCGCTGGCTCTCAAAA
		-249	3.7	ATGTGCGCTGGCTCTCAAAAAA
		-124	4.5	TGCTGTGATGAATTTCGCATAA
		0	4	ATGTTTGATAAACGTCACCGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylR
Ortholog function: Xylose activator XylR (AraC family)
Escherichia coli str. K-12 substr. MG1655	b3569	-253	4.2	AAGTGTGCGCTCGCTCGCAAAA
		-163	3.7	AAGTAAGATCTCGGTCATAAAT
Salmonella typhimurium LT2	STM3662	-251	4.8	AAATGTGCTCTGGCTCTCAAAA
		-124	4.5	TGCTGTGATGAATTTCGCATAA
Citrobacter koseri ATCC BAA-895	CKO_05026	-254	4.1	AAGTGTGCGCCGCCTCGCAAAA
		-162	3.8	AAGTACGATCTCGGTCATAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03933	-234	3.8	AAATACGATCGCCGTCATAATT
Enterobacter sp. 638	Ent638_0152	-264	3.9	AAACGTGCGCTGGCTCCCAAAA
Yersinia pestis KIM	y4053	-264	4.8	AATTGTGGTGTAGATCTCATAA
		-160	4.2	AAACATGATCGTTATCATAAAA
Serratia proteamaculans 568	Spro_0102	-259	4.4	AAATGTGCGACAGATCTCATAA
		-166	3.7	AAGCATGACCGCCATCATAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0101	-272	4.5	AAATATGACCCGCATCAAAAAA
Proteus mirabilis HI4320	PMI1276	-93	4.9	TTGTGTGATAGTAATCACATAG

Position: -148 Score: 3.8 Sequence: AAATGCGGCGTTTATCGCAAAT Locus tag: SPA3515
	SPA3515	-148	3.8	AAATGCGGCGTTTATCGCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: malS
Ortholog function: periplasmic alpha-amylase precursor
Escherichia coli str. K-12 substr. MG1655	b3571	-269	4.2	ATTTGAGAGTTGAATCTCAAAT
		-152	4.1	AAATGTGGGGGTTATCGCAAAA
		-118	3.6	TTGCGCGAGATCGCTCACCCTT
Salmonella typhimurium LT2	STM3664	-148	4.5	AAATGTGGTGCTTATCGCAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03935	-146	3.7	AAATGCTAGCTTCGTCTCATTT
Enterobacter sp. 638	Ent638_0150	-264	4.2	AATTGAGAGCGGAATCTCAAAT
		-147	4.1	AATTGTGTGCGATATCGCAGAT
		-117	3.8	AATTTTGCGCGAGATCACTCAT
Serratia proteamaculans 568	Spro_0054	-163	4	CATTGTAATATAGATTAAAAAA

Position: -64 Score: 4.4 Sequence: TATCGTGAACTGCAACACACTT Locus tag: SPA3518
	SPA3518	-64	4.4	TATCGTGAACTGCAACACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yiaJ
Ortholog function: Hypothetical transcriptional regulator yiaJ, IclR family
Escherichia coli str. K-12 substr. MG1655	b3574	-47	3.7	GATCGTGAACTACGGCACACTT
Salmonella typhimurium LT2	STM3667	-64	4.4	TATCGTGAACTGCAACACACTT
Citrobacter koseri ATCC BAA-895	CKO_05032	-63	3.8	GATCGTGAACTGAAACACACTT

Position: -187 Score: 4.5 Sequence: AAGTGTGTTGCAGTTCACGATA Locus tag: SPA3519
	SPA3519	-187	4.5	AAGTGTGTTGCAGTTCACGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yiaK
Ortholog function: 3-dehydro-L-gulonate 2-dehydrogenase (EC 1.1.1.130)
Escherichia coli str. K-12 substr. MG1655	b3575	-175	4.1	AAGTGTGCCGTAGTTCACGATC
Salmonella typhimurium LT2	STM3668	-187	4.5	AAGTGTGTTGCAGTTCACGATA
Citrobacter koseri ATCC BAA-895	CKO_05033	-177	4.1	AAGTGTGTTTCAGTTCACGATC
Serratia proteamaculans 568	Spro_3933	-182	4.8	AAACGTGTTGTCGATCACAAAT

Position: -324 Score: 4.7 Sequence: TCTTGTGAAGAGGATCACAAAA Position: -280 Score: 5.3 Sequence: AAATGTGAAATATCTCACATAA Position: -207 Score: 4.8 Sequence: CTTTGTGATCAATATCACATCA Position: -163 Score: 5.4 Sequence: TTATGTGACGCAAATCACATAA Locus tag: SPA3536
	SPA3536	-324	4.7	TCTTGTGAAGAGGATCACAAAA
		-280	5.3	AAATGTGAAATATCTCACATAA
		-207	4.8	CTTTGTGATCAATATCACATCA
		-163	5.4	TTATGTGACGCAAATCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtlA
Ortholog function: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655	b3599	-206	4.5	TTTTGTGATGAACGTCACGTCA
		-162	5.4	TTATGTGATTGATATCACACAA
		-113	3.3	TTCAGTGCCAGATTTCGCAGTA
Salmonella typhimurium LT2	STM3685	-207	4.8	CTTTGTGATCAATATCACATCA
		-163	5.4	TTATGTGACGCAAATCACATAA
Citrobacter koseri ATCC BAA-895	CKO_05054	-203	5.2	TTTTGTGATCAATATCACATCA
		-159	5	TCATGTGATCCAAATCACACAA
		-110	3.4	TTCAGTGCCAGATTTCGCACTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03942	-208	4.9	TTTTGTGATCATCATCACTAAA
		-164	5.2	TCATGTGATCCAAATCACATAA
		-115	3.4	TTCAGTGCCAGATTTCGCACTA
Enterobacter sp. 638	Ent638_0136	-224	3.4	TATTTTTTTCATACTCTCATTT
		-205	4.8	TTTTGTGATGGCGATCACCTCA
		-161	5.1	TTGCGTGATGCAGATCACACAA
Erwinia amylovora ATCC 49946	EAM_3416	-229	3.3	CATTGCGAATATCTTTACACTT
		-210	3.9	CTTCGTGACTCATGTCACTAAA
		-166	4.8	TTAAGTGACCCGCATCACACTT
		-95	3.2	CGTTTTGATCGTGATCCCTCAA
		-34	3.5	ACATGAGATTTGCATCATTAAT
Yersinia pestis KIM	y4087	-223	4.6	AGATGTGATCTTAATCAACAAA
		-179	4.5	TTGTGTGACTTTCGTCACGAAA
Serratia proteamaculans 568	Spro_0072	-195	5.2	AAATGTGATGTATATCACTATA
		-151	4.5	GTTGGTGATCTGCATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0087	-230	5.1	TTTTGTGAAGTAAATCACCTAT
		-186	4.5	TTGTGTGATTTTTGTCACGTTG

Position: -147 Score: 3.8 Sequence: TTTATTGATATTTATAATAAAT Position: -58 Score: 4.9 Sequence: AATCGTGATACAGCGCACAAAT Locus tag: SPA3590
	SPA3590	-147	3.8	TTTATTGATATTTATAATAAAT
		-58	4.9	AATCGTGATACAGCGCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yicG
Ortholog function: Putative inner membrane protein
Escherichia coli str. K-12 substr. MG1655	b3646	-58	4.4	AATCGTGACAATGCGCACAAAT
Salmonella typhimurium LT2	STM3738	-210	3.7	TTAAATTATCTAAGTCAAAATA
		-147	3.8	TTTATTGATATTTATAATAAAT
		-58	4.9	AATCGTGATACAGCGCACAAAT
Citrobacter koseri ATCC BAA-895	CKO_05103	-58	4.7	AATCGTGATATTACGCACAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03994	-55	4.9	AATCGTGATCCTGCGCACAAAT
Enterobacter sp. 638	Ent638_0094	-55	3.9	AATCGTGATATGTTCTGCAAAA
Edwardsiella tarda EIB202	ETAE_0032	-180	3.8	AAAACTAATCTATATCAAATAT

Position: -124 Score: 4.5 Sequence: CTATGTGATTTTCATCTAATAT Position: -94 Score: 4.2 Sequence: TTTTGCGATATGGTTCATTTTA Locus tag: SPA3651
	SPA3651	-124	4.5	CTATGTGATTTTCATCTAATAT
		-94	4.2	TTTTGCGATATGGTTCATTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dsdC
Ortholog function: DNA-binding transcriptional dual regulator
Escherichia coli str. K-12 substr. MG1655	b2364	-115	3.9	TGGAGTGATTTACATCTAAAAA
		-85	4.6	AATTGAGATATGGTTCACTTTA
Salmonella typhimurium LT2	STM3800	-142	3.8	TGATGTAAATTGAATCAACTAT
		-124	4.5	CTATGTGATTTCCATCTAATAT
		-94	4.2	TTTTGCGATATGGTTCATTTTA
Citrobacter koseri ATCC BAA-895	CKO_00019	-32	3.9	AAGGGTGATTTGCATCCAATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04079	-125	3.9	AAAGGTGATTTAGCTCTAAAAG
		-95	4.2	AAATATGCTATGGGTCAAATTA
Serratia proteamaculans 568	Spro_2451	-76	3.6	TTTAGCGACATGGGTCAACTTT
Proteus mirabilis HI4320	PMI0184	-199	3.6	TATTGTTAAACATATTGAATAT
		-117	4.4	ATAGGTGATCAGATGCACAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu1968	-124	4.4	TTCAGTGATACCGATCAAAATT
		-94	4.5	ATTTGCGATTTAAATCACTAAA

Position: -153 Score: 4 Sequence: TAAAATGAACCATATCGCAAAA Position: -123 Score: 4.1 Sequence: ATATTAGATGAAAATCACATAG Locus tag: SPA3652
	SPA3652	-153	4	TAAAATGAACCATATCGCAAAA
		-123	4.1	ATATTAGATGAAAATCACATAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: dsdX
Ortholog function: DsdX permease
Escherichia coli str. K-12 substr. MG1655	b2365	-154	4.4	TAAAGTGAACCATATCTCAATT
Salmonella typhimurium LT2	STM3801	-153	4	TAAAATGAACCATATCGCAAAA
		-123	4.2	ATATTAGATGGAAATCACATAG
Citrobacter koseri ATCC BAA-895	CKO_00020	-124	4	TTATTGGATGCAAATCACCCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04080	-152	4.3	TAATTTGACCCATAGCATATTT
		-122	3.7	CTTTTAGAGCTAAATCACCTTT

Position: -262 Score: 4.6 Sequence: ATGTGTGATCTGGTGCACGCTT Position: -211 Score: 4.1 Sequence: TTTTGTACGATCGTTCACACTT Locus tag: SPA3711
	SPA3711	-262	4.6	ATGTGTGATCTGGTGCACGCTT
		-211	4.1	TTTTGTACGATCGTTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpI
Ortholog function: ATP synthase subunit I
Escherichia coli str. K-12 substr. MG1655	b3739	-263	4.8	ATATGTGATCTGAAGCACGCTT
Salmonella typhimurium LT2	STM3872	-262	4.6	ATGTGTGATCTGGTGCACGCTT
		-211	4.1	TTTTGTACGATCGTTCACACTT
Citrobacter koseri ATCC BAA-895	CKO_00079	-262	4.7	ATATGTGATCCGAAGCACGCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04144	-262	4.7	TTATGTGATCTGATGCACGCTT
Enterobacter sp. 638	Ent638_4125	-261	4.8	TTTTGTGATCTCGTGCACGCTT
Erwinia amylovora ATCC 49946	EAM_3481	-264	4.4	ATTTGTGATCGTGGACACGCTT
Yersinia pestis KIM	y4142	-263	5.4	TTATGTGATGTATTTCACGTTT
Serratia proteamaculans 568	Spro_0001	-265	4.4	TATTGTGAGCAACTACACGTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4519	-254	5	TTATGTGAGTCACATCACAGAT
Edwardsiella tarda EIB202	ETAE_3526	-297	3.7	AATCGTGAAAATATTTAAATTA
Proteus mirabilis HI4320	PMI3057	-259	5	TTGTGTGTTCTAGATCACATTA
Photorhabdus luminescens subsp. laumondii TTO1	plu0047	-265	5.7	TTATGTGATTTAAATCACATTT

Position: -234 Score: 4.2 Sequence: AAACGTGATCAATTTAACACCT Locus tag: SPA3779
	SPA3779	-234	4.2	AAACGTGATCAATTTAACACCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemC
Ortholog function: porphobilinogen deaminase
Escherichia coli str. K-12 substr. MG1655	b3805	-236	4.2	AAACGTGATCAATTTAACACCT
Salmonella typhimurium LT2	STM3938	-219	4.2	AAACGTGATCAATTTAACACCT
Citrobacter koseri ATCC BAA-895	CKO_00147	-220	4.2	AAACGTGATCAATTTAACACCT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04304	-232	4.2	AAACGTGATCAATTTAACACCT
Enterobacter sp. 638	Ent638_3987	-211	4.2	AAACGTGATCAATCTAACACCT
Serratia proteamaculans 568	Spro_0178	-223	4.2	AAACGTGATCAATCTAACACCT
Edwardsiella tarda EIB202	ETAE_0118	-205	4.2	AAACGTGATCAATTTAACACCT

Position: -164 Score: 4 Sequence: AGGTGTTAAATTGATCACGTTT Locus tag: SPA3780
	SPA3780	-164	4	AGGTGTTAAATTGATCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyaA
Ortholog function: Adenylate cyclase (EC 4.6.1.1)
Salmonella typhimurium LT2	STM3939	-164	4	AGGTGTTAAATTGATCACGTTT
Citrobacter koseri ATCC BAA-895	CKO_00148	-174	4	AGGTGTTAAATTGATCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04305	-147	4	AGGTGTTAAATTGATCACGTTT

Position: -144 Score: 5.2 Sequence: TATTGTGATGCGCATCACTTTT Locus tag: SPA3809
	SPA3809	-144	5.2	TATTGTGATGCGCATCACTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: udp
Ortholog function: Uridine phosphorylase (EC 2.4.2.3)
Escherichia coli str. K-12 substr. MG1655	b3831	-144	5.2	TTATGTGATTTGCATCACTTTT
		-92	4.2	CATGGTGATGAGTATCACGAAA
Salmonella typhimurium LT2	STM3968	-144	5.1	TATTGTGATGAACATCACTTTT
		-92	4.1	CATAGTGATGGCTGTCACGAAA
Citrobacter koseri ATCC BAA-895	CKO_00173	-143	5.2	TTATGTGATGTAAATCACTATT
		-91	3.9	CATGGTGATGAGCGTCACGAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04327	-143	5.2	TAATGTGATGTGTATCACTATT
		-91	4.1	CTTGGTGACTATCATCACAAAA
Enterobacter sp. 638	Ent638_3962	-143	4.7	TAGTGTGATGCATGTCACTATT
Erwinia amylovora ATCC 49946	EAM_0200	-143	4.6	AATTGCGACTTGTATCACCTTT
		-90	4	ATTAAGGATGTTCATCACATAA
Yersinia pestis KIM	y0444	-149	5.4	ATGTGTGATTTAAATCACAATT
		-97	4	CAAGGTGACATAAATCACGAAA
Serratia proteamaculans 568	Spro_0244	-143	5.3	TTTTGTGACTTTAATCACAAAA
		-125	3.7	AAAAGTTATGTAGATTGCATTC
		-91	4.1	CATAGTGATGGTTGTCACGAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0185	-197	5.1	AAAAGTGATTTAAGTCACATTT
Edwardsiella tarda EIB202	ETAE_0143	-148	4.7	TATTGTGAAAATAATCACAGTT
Proteus mirabilis HI4320	PMI3532	-145	5.1	ATTTGTGATAACTATCACGTTT
		-93	3.6	ACAGGTGACGTCAATCACTAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu4417	-271	5.2	TTTTGTGATTTATATCTCAAAA
		-219	4	TGAAGTGACATTTATCACTAAA

Position: -272 Score: 4.2 Sequence: CTTTGTGATCGCTTTCACGGAG Locus tag: SPA3848
	SPA3848	-272	4.2	CTTTGTGATCGCTTTCACGGAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: glutamine synthetase
Escherichia coli str. K-12 substr. MG1655	b3870	-269	4.2	CTTTGTGATCGCTTTCACGGAG
Salmonella typhimurium LT2	STM4007	-272	4.2	CTTTGTGATCGCTTTCACGGAG
		-114	3.8	CAATGTGAAAGTTGGCACAGAT
Citrobacter koseri ATCC BAA-895	CKO_03140	-250	4.2	CTTTGTGATCGCTTTCACGGAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04178	-299	3.9	CTTTGTGACCGCTTTCACGGAG
Serratia proteamaculans 568	Spro_4881	-267	4	GTATGTGATCCCTTTCACGGTG
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0029	-265	4.2	CTTTGTGATCCCTTTCACGGTG
Edwardsiella tarda EIB202	ETAE_3493	-267	4.2	GTTTGTGATCCTATTCACGATG
Proteus mirabilis HI4320	PMI2882	-270	4.7	AATTGTGATCCTTTTCACGCCT
		-215	3.8	AATTGTGCAACTATTCAGACTT
		-181	3.9	ATTTGTGCAATAATTAAAAAAT

Position: -127 Score: 4.1 Sequence: AACTGTGAACGCTATCACGTTC Locus tag: SPA3890
	SPA3890	-127	4.1	AACTGTGAACGCTATCACGTTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaB
Ortholog function: rhamnulokinase
Escherichia coli str. K-12 substr. MG1655	b3904	-162	3.8	AAATGCGGTGAGCATCACATCA
		-127	4.4	AATTGTGAACATCATCACGTTC
Salmonella typhimurium LT2	STM4047	-247	3.9	AAGGGTTATCGGCCTCACCTTA
		-127	4.1	AACTGTGAACGCTATCACGTTC
Citrobacter koseri ATCC BAA-895	CKO_03100	-182	4.5	AATTGTGAACGCTATCACGTTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04213	-128	4.2	AACTGTGATGTCCCTCACGGTC
Enterobacter sp. 638	Ent638_4067	-129	4.2	AACTGTGAACTCCCTCACGTTC
Yersinia pestis KIM	y0587	-234	4.2	AACTGTGAGCTGTTTCACTTTC

Position: -182 Score: 4.3 Sequence: GAACGTGATAGCGTTCACAGTT Position: -147 Score: 4 Sequence: CGGTGTGATGTCGTCCGCATTT Position: -62 Score: 3.8 Sequence: TAAGGTGAGGCCGATAACCCTT Locus tag: SPA3891
	SPA3891	-182	4.3	GAACGTGATAGCGTTCACAGTT
		-147	4	CGGTGTGATGTCGTCCGCATTT
		-62	3.8	TAAGGTGAGGCCGATAACCCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaS
Ortholog function: L-rhamnose operon regulatory protein RhaS
Escherichia coli str. K-12 substr. MG1655	b3905	-182	4.5	GAACGTGATGATGTTCACAATT
		-147	4.5	TGATGTGATGCTCACCGCATTT
Salmonella typhimurium LT2	STM4048	-182	4.3	GAACGTGATAGCGTTCACAGTT
		-147	4	CGGTGTGATGTCGTCCGCATTT
		-62	3.8	TAAGGTGAGGCCGATAACCCTT
Citrobacter koseri ATCC BAA-895	CKO_03099	-194	4.5	GAACGTGATAGCGTTCACAATT
		-34	4.3	ATTTCTGACATGTTTCTCATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04214	-204	3.8	GACCGTGAGGGACATCACAGTT
Enterobacter sp. 638	Ent638_4066	-194	4.2	GAACGTGAGGGAGTTCACAGTT
Yersinia pestis KIM	y0590	-214	3.9	GAAAGTGAAACAGCTCACAGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0441	-144	3.9	CGGTGTGATCCTTGCCACACTT

Position: -293 Score: 3.9 Sequence: TTATGTGATCTCACGCAGCGTT Position: -149 Score: 3.9 Sequence: AAACGTGAAGTTAATCACTTCA Locus tag: SPA3893
	SPA3893	-293	3.9	TTATGTGATCTCACGCAGCGTT
		-149	3.9	AAACGTGAAGTTAATCACTTCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaT
Ortholog function: L-rhamnose-proton symport
Escherichia coli str. K-12 substr. MG1655	b3907	-145	4.1	AGATGTGAAGCAAATCACCCAC
Salmonella typhimurium LT2	STM4050	-293	3.6	TTATGTGACCTCACGCAGCGTT
		-149	3.9	AAACGTGAAGTTAATCACTTCA
Citrobacter koseri ATCC BAA-895	CKO_03094	-148	4.1	ATATGTGAGCCAAATCACCCGT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04216	-149	4.7	TTTTGTGATGTAGAACAACTAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0450	-193	3.6	TTTTGTGATCCTGCCTATATCA

Position: -161 Score: 3.6 Sequence: AACTCTCATCCAGATCACGTTT Position: -92 Score: 4 Sequence: TTTTGTGGCGTTAATCACGGTT Locus tag: SPA3916
	SPA3916	-161	3.6	AACTCTCATCCAGATCACGTTT
		-92	4	TTTTGTGGCGTTAATCACGGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lsrR
Ortholog function: LsrR, transcriptional repressor of lsr operon
Escherichia coli str. K-12 substr. MG1655	b1512	-87	4.1	AACTGTGGTTGCCATCACAGAT
Salmonella typhimurium LT2	STM4073	-161	3.6	AACTCTCATCCAGATCACGTTT
		-92	4	TTTTGTGGCGTTAATCACGGTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03508	-75	3.7	TTTTGCCAGTCGGCTCACACTT
Enterobacter sp. 638	Ent638_3537	-122	3.4	TTTATTGATTAGGATCCAATTC
Photorhabdus luminescens subsp. laumondii TTO1	plu3142	-137	4.3	AATTGTGATCTTGGCAATATTT

Position: -147 Score: 3.9 Sequence: TTTATTGACGCAGTACACACAT Locus tag: SPA3930
	SPA3930	-147	3.9	TTTATTGACGCAGTACACACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpF
Ortholog function: facilitator for glycerol uptake
Salmonella typhimurium LT2	STM4087	-147	3.9	TTTATTGACGCAGTACACACAT

Position: -66 Score: 3.9 Sequence: TAATGTATTTTTATTCATAATT Locus tag: SPA3958
	SPA3958	-66	3.9	TAATGTATTTTTATTCATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argE
Ortholog function: acetylornithine deacetylase
Escherichia coli str. K-12 substr. MG1655	b3957	-66	3.7	TAGTGTATTTTTATTCATAAAT
Salmonella typhimurium LT2	STM4120	-66	3.9	TAATGTATTTTTATTCATAATT
Citrobacter koseri ATCC BAA-895	CKO_03037	-27	4.3	TAATGTATTTTTATTCACAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04246	-27	4	TATTGTATTTTTATTCAAAATA
Enterobacter sp. 638	Ent638_4029	-66	4.2	TAGTGTATTTTTATTCACATTT
Erwinia amylovora ATCC 49946	EAM_0137	-66	3.8	TATTGTATTTTTATTCACTATT
Yersinia pestis KIM	y0309	-223	3.6	TATTTTTATTTATGTCAATAAA
Serratia proteamaculans 568	Spro_4782	-71	4.3	TATTGTATTTTTATTCACAATA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0191	-65	4	TATTGTATTTTTATTCAAAATA
Edwardsiella tarda EIB202	ETAE_3483	-65	3.9	TATTGTATTTTTATTCATAATT
Proteus mirabilis HI4320	PMI3236	-65	3.9	TAATGTATTTTTATTCAAAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu4745	-65	3.9	TAATGTATTTTTATTCAAAAAA

Position: -44 Score: 3.5 Sequence: AATTATGAATAAAAATACATTA Locus tag: SPA3959
	SPA3959	-44	3.5	AATTATGAATAAAAATACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Salmonella typhimurium LT2	STM4121	-44	3.5	AATTATGAATAAAAATACATTA
Citrobacter koseri ATCC BAA-895	CKO_03036	-110	4	ATTTGTGAATAAAAATACATTA
Enterobacter sp. 638	Ent638_4028	-44	3.8	AAATGTGAATAAAAATACACTA
Yersinia pestis KIM	y0310	-43	3.7	TTTATTGACATAAATAAAAATA
Serratia proteamaculans 568	Spro_4781	-167	4	TATTGTGAATAAAAATACAATA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0192	-159	3.5	TATTTTGAATAAAAATACAATA
Edwardsiella tarda EIB202	ETAE_3482	-160	3.4	AATTATGAATAAAAATACAATA
Proteus mirabilis HI4320	PMI3237	-57	3.6	TTTTTTGAATAAAAATACATTA
Photorhabdus luminescens subsp. laumondii TTO1	plu4744	-59	3.6	TTTTTTGAATAAAAATACATTA

Position: -61 Score: 3.7 Sequence: TTCTGTGACTGGCGTTACAATC Locus tag: SPA4038
	SPA4038	-61	3.7	TTCTGTGACTGGCGTTACAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pgi
Ortholog function: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Salmonella typhimurium LT2	STM4221	-61	3.7	TTCTGTGACTGGCGTTACAATC
Citrobacter koseri ATCC BAA-895	CKO_03893	-61	4.1	TTTTGTGACTGGCGTTACAATC
Serratia proteamaculans 568	Spro_4477	-80	3.7	AAAAGAGATCATAATCACAGTC
Proteus mirabilis HI4320	PMI2754	-245	3.7	CAGTGAGATGTTAAACACAGTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4379	-205	3.8	TGACGCGATGAGAATCATAAAA

Position: -192 Score: 4.3 Sequence: TTTCGTGATGCCGCCCGCAAAA Position: -129 Score: 4.3 Sequence: TTATGCAACACAGATCACATAA Locus tag: SPA4046
	SPA4046	-192	4.3	TTTCGTGATGCCGCCCGCAAAA
		-129	4.3	TTATGCAACACAGATCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: malE
Ortholog function: maltose ABC transporter periplasmic protein
Salmonella typhimurium LT2	STM4229	-192	4.3	TTTCGTGATGCCGCCCGCAAAA
		-160	3.6	TTTTGTGTGCGCCAGCACGCAT
		-158	3.8	TTGTGTGCGCCAGCACGCATTA
		-129	4.3	TTATGCAACACAGATCACATAA
Citrobacter koseri ATCC BAA-895	CKO_03881	-193	3.7	TTTCGTGATGTCACCTGCAAAA
		-159	3.9	TTATGTGCGCCAACACGCATTA
		-130	4.3	TTATGCAACACAGATCACATAA

Position: -254 Score: 4.7 Sequence: TTATGTGATCTGTGTTGCATAA Locus tag: SPA4047
	SPA4047	-254	4.7	TTATGTGATCTGTGTTGCATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: malK
Ortholog function: maltose/maltodextrin transporter ATP-binding protein
Escherichia coli str. K-12 substr. MG1655	b4035	-254	4.4	TTGTGTGATCTCTGTTACAGAA
		-225	3.9	TAATGTGGAGATGCGCACATAA
		-191	3.7	TTTTGCAAGCAACATCACGAAA
Salmonella typhimurium LT2	STM4230	-254	4.7	TTATGTGATCTGTGTTGCATAA
		-225	3.6	TAATGCGTGCTGGCGCACACAA
		-223	3.8	ATGCGTGCTGGCGCACACAAAA
Citrobacter koseri ATCC BAA-895	CKO_03880	-254	4.7	TTATGTGATCTGTGTTGCATAA
		-225	3.7	TAATGCGTGTTGGCGCACATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04424	-254	4.5	TTGTGTGATCTCCATTGCAAAA
		-225	3.7	TATTGCGTCCTGGAGCACAGAA
Photorhabdus luminescens subsp. laumondii TTO1	plu0457	-250	4	GGGTGTGATCTCTATTACAAAA
		-221	3.8	AAGCGTGCCGTTGCCCACAAAA
		-187	4.9	TTTTGCGATAAATATCACAATT

Position: -139 Score: 3.7 Sequence: TGTTGTGATCATCCTCTTTTTT Locus tag: SPA4066
	SPA4066	-139	3.7	TGTTGTGATCATCCTCTTTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aphA
Ortholog function: acid phosphatase/phosphotransferase
Escherichia coli str. K-12 substr. MG1655	b4055	-130	3.6	CATCCTGCTTTTCATCACAAAA
		-57	4	TTTTGCAACAAATCTCACAATA
Salmonella typhimurium LT2	STM4249	-139	3.7	TGTTGTGATCATCCTCTTTTTT
Citrobacter koseri ATCC BAA-895	CKO_03845	-255	3.9	TATTGTGAATGCGTGTACAGAA
		-224	3.7	GTGTGTGTGGTTTATCACACAT
Enterobacter sp. 638	Ent638_0259	-57	3.8	TTTTTTGACCATTCGCTCAATT
Edwardsiella tarda EIB202	ETAE_3469	-150	5	TTTTGTGATGAATGTCACGTAT
		-98	3.7	AACATAGATCATGATCACATTA
Proteus mirabilis HI4320	PMI0729	-148	4.3	AAGTGTTAGATAGATCAAAAAA
		-87	4.3	TAACGTGCGCTATATCTCATTT
		-34	4.3	TTCTGTGATTAATATAAAAATT

Position: -149 Score: 5.7 Sequence: TTTTGTGATATAGTTCACAAAA Locus tag: SPA4079
	SPA4079	-149	5.7	TTTTGTGATATAGTTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjcB
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b4060	-149	5.7	AATTGTGATATAGTTCACAAAA
Salmonella typhimurium LT2	STM4263	-149	5.7	TTTTGTGATATAGTTCACAAAA
Citrobacter koseri ATCC BAA-895	CKO_03830	-150	5.7	TATTGTGATATAGTTCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04460	-143	5.4	AAGTGTGATATAGTTCACACAA
Enterobacter sp. 638	Ent638_0263	-82	5.3	AAACGTGATATAGTTCACACAT
Serratia proteamaculans 568	Spro_2355	-81	5	CAATGTGACGCAGATCACACTA

Position: -100 Score: 4.1 Sequence: TTGCGTGATCTGTCGCCCAAAT Locus tag: SPA4092
	SPA4092	-100	4.1	TTGCGTGATCTGTCGCCCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acs
Ortholog function: acetyl-coenzyme A synthetase
Escherichia coli str. K-12 substr. MG1655	b4069	-100	4.1	TTGCGTGATCTGTCGCCCAAAT
Salmonella typhimurium LT2	STM4275	-100	4.1	TTGCGTGATCTGTCGCCCAAAT
Citrobacter koseri ATCC BAA-895	CKO_03816	-101	4.3	TTGCGTGATCTGCCGCGCAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04478	-101	3.9	TTGCGTGATCTGCCCCCCAATT
Enterobacter sp. 638	Ent638_0276	-101	4.1	TTGCGTGATCTGTCGCCCAAAT
Yersinia pestis KIM	y0510	-97	4.2	ATACGTGATCTGCCGCCCAAAA
Serratia proteamaculans 568	Spro_0297	-97	4	TTGCGTGATCTGCCGCCCAAAA
Proteus mirabilis HI4320	PMI3037	-97	4.5	TTTCGTGATCTTATGCGCAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu0074	-98	4.2	TTGCGTGATCTTCCGCGCAAAA

Position: -235 Score: 5.2 Sequence: ATGTGTGAAGTTGATCACATAT Locus tag: SPA4108
	SPA4108	-235	5.2	ATGTGTGAAGTTGATCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: proP
Ortholog function: L-Proline/Glycine betaine transporter ProP
Salmonella typhimurium LT2	STM4290	-235	5.2	ATGTGTGAAGTTGATCACATAT
Serratia proteamaculans 568	Spro_1860	-132	5.1	TTACGTGATTCGCATCACACAA

Position: -53 Score: 3.5 Sequence: GGCTGTGATCCATTTATCAAAA Position: -2 Score: 3.5 Sequence: AAATGTTATTTAGTATACAGCT Locus tag: SPA4119
	SPA4119	-53	3.5	GGCTGTGATCCATTTATCAAAA
		-2	3.5	AAATGTTATTTAGTATACAGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuB
Ortholog function: C4-dicarboxylate transporter DcuB
Escherichia coli str. K-12 substr. MG1655	b4123	-53	3.5	GACTGTGATCTATTCAGCAAAA
Salmonella typhimurium LT2	STM4301	-53	3.5	GGCTGTGATCCATTTATCAAAA
Citrobacter koseri ATCC BAA-895	CKO_03748	-52	3.9	GACTGTGATCTATTTATCAAAA
Enterobacter sp. 638	Ent638_2479	-81	3.3	AAATCTGATCTGGCTCCCAGCC
Serratia proteamaculans 568	Spro_3863	-77	3.6	GTTTGTGATCGCTATCCCTCAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1533	-296	3.5	TATTGCGAGCGAGATCTTTTAT
		-247	3.5	TTAATAGATTTAGATCAAGAAA
Edwardsiella tarda EIB202	ETAE_2844	-194	3.6	ATACTTTATTCAGATCAATTTT
Proteus mirabilis HI4320	PMI0389	-138	3.3	AACTATAACAACGATCAAAAAA

Position: -4 Score: 3.9 Sequence: TAATATGATAGTTGTCGAACTT Locus tag: SPA4141
	SPA4141	-4	3.9	TAATATGATAGTTGTCGAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuA
Ortholog function: anaerobic C-4-dicarboxylate symporter
Salmonella typhimurium LT2	STM4325	-209	4.2	AGCGGTGACCTATTTCACAAAA
		-159	4.2	TTAAGTGATCCAGATTACGGTA
Citrobacter koseri ATCC BAA-895	CKO_03697	-54	4.2	AGCGGTGACCTATTTCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04528	-204	3.9	AGCGGTGACCCATTTCACAGAT
		-154	3.8	ATAAGTGATCAAGCTTACTGAT
Enterobacter sp. 638	Ent638_0325	-205	4.1	AGCGGTGATTCATTTCACAGAT
Erwinia amylovora ATCC 49946	EAM_0415	-228	4.2	CAATGTGACCTGGAACAGATAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0620	-272	4	ACTCGTGACTACAATCACAGTT

Position: -153 Score: 4.1 Sequence: TTTTGTGAAATAGGTCACCGCT Position: -92 Score: 4.3 Sequence: AATTTTGCTACGCATCACCATA Locus tag: SPA4144
	SPA4144	-153	4.1	TTTTGTGAAATAGGTCACCGCT
		-92	4.3	AATTTTGCTACGCATCACCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fxsA
Ortholog function: suppressor of F plamsid exlusion of phage T7
Escherichia coli str. K-12 substr. MG1655	b4140	-202	4.1	TACCGTAATCTGGATCACTTTA
		-152	4.3	ATTTGTGAAATAGATCACCGCT
Salmonella typhimurium LT2	STM4327	-203	4.1	TACCGTAATCTGGATCACTTAA
		-153	4.1	TTTTGTGAAATAGGTCACCGCT
Citrobacter koseri ATCC BAA-895	CKO_03695	-156	4.1	TTTTGTGAAATAGGTCACCGCT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04530	-140	3.7	ATCTGTGAAATGGGTCACCGCT
Enterobacter sp. 638	Ent638_0327	-151	3.8	ATCTGTGAAATGAATCACCGCT
Erwinia amylovora ATCC 49946	EAM_0417	-161	3.9	ATATCTGTTCCAGGTCACATTG
Yersinia pestis KIM	y0607	-245	4.8	ATCTGTGATTGCTCTCACACTT
Serratia proteamaculans 568	Spro_0407	-117	4.9	TTCTGTGATCTCATTCACGTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0623	-245	3.7	AACTGTGATTGTAGTCACGAGT
		-185	3.6	AAATGTGCAAAGGCGCACCCAT
Edwardsiella tarda EIB202	ETAE_0312	-189	4.6	ATCTGTGATAATACTCACAGAT
Proteus mirabilis HI4320	PMI2545	-188	4.7	TTTTGTGATCTATCTCATGGAT
Photorhabdus luminescens subsp. laumondii TTO1	plu4136	-188	5.6	ATATGTGATATTTATCACAATT

Position: -122 Score: 4.2 Sequence: ATTTGCGCGCTACGTCACATTT Locus tag: SPA4200
	SPA4200	-122	4.2	ATTTGCGCGCTACGTCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ulaA
Ortholog function: Ascorbate-specific PTS system, EIIC component
Escherichia coli str. K-12 substr. MG1655	b4193	-124	3.8	ATTTGCGGGTCGCGTCACATTT
		-87	3.8	TGTTGTGATTACTTTTGAAAAT
Salmonella typhimurium LT2	STM4383.S	-122	3.9	ATTTGCGCGCTACGTCACAGTT
		-85	3.8	TGTTGTGATTACTTTTGAAAAT
Citrobacter koseri ATCC BAA-895	CKO_03643	-124	3.9	ATTTGCGTGGTGCGTCACAATT
		-87	3.8	TGTTGTGATTACTTTTGAAAAT

Position: -193 Score: 5.1 Sequence: TTTTGTGAGCTAATTCGCATTA Locus tag: SPA4215
	SPA4215	-193	5.1	TTTTGTGAGCTAATTCGCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cycA2
Ortholog function: D-alanine/D-serine/glycine permease
Escherichia coli str. K-12 substr. MG1655	b4208	-198	4.7	TTTTGTGAGCTGTTTCGCGTTA
Salmonella typhimurium LT2	STM4398	-193	5.1	TTTTGTGAGCTAATTCGCATTA
		-170	3.9	CAAAGTGATATAACACTCATTT
Citrobacter koseri ATCC BAA-895	CKO_03624	-199	4.4	TTTTGTGAGCTAATTCGCGTTG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04601	-192	4.7	TTTTGTGAGCTATTTCGCGTTA
		-169	3.8	ATGAGTGATATAACACTCACTT
Enterobacter sp. 638	Ent638_0378	-201	4.2	TTTTGTGAGCTGTTTTGCATTG
Yersinia pestis KIM	y2447	-199	4.5	CACTGTGATGTACTTAACAAAA
		-118	3.7	TAATATTAAATTATTCGCAAAT
Proteus mirabilis HI4320	PMI1614	-102	4.4	TTCTGAGATTTGTGTCACAATA
Photorhabdus luminescens subsp. laumondii TTO1	plu1965	-102	4.6	TATAGTAATCTGTGTCACAATA

Position: -144 Score: 3.7 Sequence: TTCTGTGAACACTCGCAAAAAA Locus tag: SPA4222
	SPA4222	-144	3.7	TTCTGTGAACACTCGCAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cpdB
Ortholog function: 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor
Escherichia coli str. K-12 substr. MG1655	b4213	-118	3.8	AACTGTGATAGTGTCATCATTT
		-85	3.8	AATTGTGGCATTCTTCACTGTT
Salmonella typhimurium LT2	STM4403	-145	3.7	TTCTGTGAACACTCGCAAAAAA
Citrobacter koseri ATCC BAA-895	CKO_03616	-25	4.2	TTTTGTGTTTCAGATCTAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04607	-156	3.8	TTGTTTTATTTATATCGCATCA
		-87	3.7	TTTTCTGGCAAGATTCACATTT
		-35	4.2	TTCTGTGCTATCGCTCATAAAA
Enterobacter sp. 638	Ent638_0392	-34	4	TTTTGTGGCTTGGATCGAAAAA
Yersinia pestis KIM	y0653	-148	3.6	AACTGTGAGCGTCTACGCGTTA
		-116	3.8	TTTTCTGCCAAACTTCACACTT
		-63	4.4	TTTTGCGATACATATCGAATAT
Serratia proteamaculans 568	Spro_0453	-95	3.8	TTTTCTGCCACACTTCACAGTT

Position: -144 Score: 3.9 Sequence: TTTTTTGCGAGTGTTCACAGAA Locus tag: SPA4223
	SPA4223	-144	3.9	TTTTTTGCGAGTGTTCACAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysQ
Ortholog function: PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase
Escherichia coli str. K-12 substr. MG1655	b4214	-126	3.6	AACAGTGAAGAATGCCACAATT
Salmonella typhimurium LT2	STM4404	-144	3.9	TTTTTTGCGAGTGTTCACAGAA
Citrobacter koseri ATCC BAA-895	CKO_03615	-178	4.1	TTTTTAGATCTGAAACACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04608	-178	4.1	TTTTATGAGCGATAGCACAGAA
		-126	3.7	AAATGTGAATCTTGCCAGAAAA
		-57	3.9	TGATGCGATATAAATAAAACAA
Enterobacter sp. 638	Ent638_0393	-167	3.9	TTTTTCGATCCAAGCCACAAAA
Erwinia amylovora ATCC 49946	EAM_0455	-158	4.2	AAATGTGACACAGCACGAATAA
Serratia proteamaculans 568	Spro_0454	-180	3.7	AACTGTGAAGTGTGGCAGAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3601	-258	3.7	TAAAGTGATTATCGTCTCTAAA

Position: -229 Score: 4.8 Sequence: AAATGTAATACCCATCACACTT Position: -162 Score: 3.8 Sequence: TGCCGCGATAGATCTCACACTT Position: -111 Score: 4.1 Sequence: TTCTGTGGCGCAGATCACCTAT Locus tag: SPA4240
	SPA4240	-229	4.8	AAATGTAATACCCATCACACTT
		-162	3.8	TGCCGCGATAGATCTCACACTT
		-111	4.1	TTCTGTGGCGCAGATCACCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: CKO_03591
Ortholog function: hypothetical protein
Salmonella typhimurium LT2	STM4440	-229	4.5	AACTGTAATACCCATCACACTT
		-162	3.8	TGCCGCGATAGATCTCACACTT
		-111	4.1	TTCTGTGGCGCAGATCACCTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04633	-172	4.3	TGTTGTGATACATCTCACGCCA
		-121	4.2	ATATGTGGAGTCGATCACCTAA
Enterobacter sp. 638	Ent638_0424	-265	3.8	AAACCTTATCCGCGTCACACTT
		-189	4.6	TAGCGTGATATTCATCACGCAA
Erwinia amylovora ATCC 49946	EAM_0469	-156	3.8	TGATGTGAGTTGTCTCGCTTTG

Position: -108 Score: 3.9 Sequence: ATTTGTGATCTTCGCCGTGTTT Locus tag: SPA4255
	SPA4255	-108	3.9	ATTTGTGATCTTCGCCGTGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: treB
Ortholog function: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655	b4240	-101	3.8	AATTGTGATCTTCGCTGCGTTT
Citrobacter koseri ATCC BAA-895	CKO_03571	-156	3.8	ATTTGTGATCTTCGCTGCGTTT
Enterobacter sp. 638	Ent638_0439	-106	4	TATTGTGATCTTCACCCGATTT
Serratia proteamaculans 568	Spro_0529	-124	3.8	TTTTGTGATCCTCGCCCCAAAC
Photorhabdus luminescens subsp. laumondii TTO1	plu3288	-127	4.3	CAATGTGATCTTCAACCCATTT

Position: -81 Score: 4.3 Sequence: CAGCGTGACATAAGTCACAAAT Locus tag: SPA4284
	SPA4284	-81	4.3	CAGCGTGACATAAGTCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: idnD
Ortholog function: L-idonate 5-dehydrogenase
Escherichia coli str. K-12 substr. MG1655	b4267	-81	5.1	TGACGTGATCTTCATCACAAAT
Salmonella typhimurium LT2	STM4484	-81	4.3	CAGCGTGACATAAGTCACAAAT

Position: -157 Score: 4.4 Sequence: ATTTGTGACTTATGTCACGCTG Locus tag: SPA4285
	SPA4285	-157	4.4	ATTTGTGACTTATGTCACGCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: idnK
Ortholog function: D-gluconate kinase, thermosensitive
Escherichia coli str. K-12 substr. MG1655	b4268	-157	4.8	ATTTGTGATGAAGATCACGTCA
		-107	4	TAACGTGATGTGCCTTGTAATT
Salmonella typhimurium LT2	STM4485	-157	4.4	ATTTGTGACTTATGTCACGCTG
		-107	3.9	TAACGTGATGTGCCTTAGAGTT

Position: -229 Score: 5.4 Sequence: TATCGTGATCTCAATCACATAA Locus tag: SPA4353
	SPA4353	-229	5.4	TATCGTGATCTCAATCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cstA2
Ortholog function: Carbon starvation protein A paralog
Escherichia coli str. K-12 substr. MG1655	b4354	-231	5.7	ATATGTGATATGAATCACATAT
Salmonella typhimurium LT2	STM4532	-229	5.4	TATCGTGATCTCAATCACATAA
Citrobacter koseri ATCC BAA-895	CKO_03443	-228	5.2	ATTAGTGATCTCAATCACATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04776	-231	5.2	TATTGTGAGCTTAATCACACAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1187	-57	3.7	TATTTTTCTACAGCTAACAAAA
Proteus mirabilis HI4320	PMI0142	-279	3.6	ATTTTTTATGTAATTAATAGTT
		-234	5.2	ATTTGTTATCTCGATCACAAAA

Position: -268 Score: 4.4 Sequence: AATTGTGATCTATATTTAACAA Locus tag: SPA4375
	SPA4375	-268	4.4	AATTGTGATCTATATTTAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: osmY
Ortholog function: Osmotically inducible protein OsmY
Salmonella typhimurium LT2	STM4561	-268	4.4	AATTGTGATCTATATTTAACAA

Position: -183 Score: 3.7 Sequence: CACTTCGATATACATCACAGTT Position: -130 Score: 4.8 Sequence: TAATGAGATCTGAATCAAATTA Locus tag: SPA4380
	SPA4380	-183	3.7	CACTTCGATATACATCACAGTT
		-130	4.8	TAATGAGATCTGAATCAAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjjI
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b4380	-183	3.9	CACTTCGATACACATCACAATT
		-130	5	TAATGCGATCTGGTTCAAATAA
Salmonella typhimurium LT2	STM4566	-183	3.7	CACTTCGATATACATCACAGTT
		-130	4.8	TAATGAGATCTGAATCAAATTA
Citrobacter koseri ATCC BAA-895	CKO_03411	-75	3.7	CACTTCGATATACATCACAGTT
		-22	4.4	TAACGAGATCCACTTCAAATAA
Enterobacter sp. 638	Ent638_0540	-133	4.7	TAATGAGATCCACTTCAAATTT
Proteus mirabilis HI4320	PMI2509	-159	3.7	TTATTTTAGATATATCTAATTT

Position: -133 Score: 4.9 Sequence: TAATTTGATTCAGATCTCATTA Position: -80 Score: 4.2 Sequence: AACTGTGATGTATATCGAAGTG Locus tag: SPA4381
	SPA4381	-133	4.9	TAATTTGATTCAGATCTCATTA
		-80	4.2	AACTGTGATGTATATCGAAGTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: deoC
Ortholog function: 2-deoxyribose-5-phosphate aldolase
Escherichia coli str. K-12 substr. MG1655	b4381	-149	4.6	TTATTTGAACCAGATCGCATTA
		-96	4.5	AATTGTGATGTGTATCGAAGTG
Salmonella typhimurium LT2	STM4567	-133	4.9	TAATTTGATTCAGATCTCATTA
		-80	4.2	AACTGTGATGTATATCGAAGTG
Citrobacter koseri ATCC BAA-895	CKO_03410	-134	4.2	TTATTTGAAGTGGATCTCGTTA
		-81	4.2	AACTGTGATGTATATCGAAGTG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04837	-158	5.2	ATTTGTGATTTTAATCACGTTA
		-105	3.7	AACTGTGATGAATGTCGAAGTG
Enterobacter sp. 638	Ent638_0541	-151	4.6	AAATTTGAAGTGGATCTCATTA
		-98	3.7	AACTGTGATGAATGTCGAAGTG
Erwinia amylovora ATCC 49946	EAM_0615	-233	4.6	TGATGTGATAATTCTAACATTA
Yersinia pestis KIM	y3743	-169	3.7	TGCGGTGAGATGGATCTCAATT
Serratia proteamaculans 568	Spro_0660	-262	4.6	ATTTGTGAACGATATCGCGTTA
		-240	5.5	TTTTGTGATGGTCTTCACATAT
		-188	3.8	TAGTGTGACTGTGAACGCGAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0727	-282	4.4	AAGTGTGAATGAATGCACAAAA
Proteus mirabilis HI4320	PMI2416	-267	4.4	ATATGTGAGTTACTTCGCAACT
		-135	5.6	TTTTGTGATTCTGATCACAATT
		-83	4.5	TATTGTGACAGAAAGCACATCT

Position: -97 Score: 3.6 Sequence: TTCAGTGATATCCGTTAAAATT Locus tag: SPA4410
	SPA4410	-97	3.6	TTCAGTGATATCCGTTAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjtD
Ortholog function: RNA methyltransferase, TrmH family, group 1
Salmonella typhimurium LT2	STM4600	-97	3.6	TTCAGTGATATCAGTTAAAATT
Citrobacter koseri ATCC BAA-895	CKO_03386	-222	3.7	AGGTGTGATTCATTCTAAATTA
		-53	4.2	TATGTTGACATTGGTCACATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04857	-94	4	TTTAGTGATTTTTGTTGCAAAT
Enterobacter sp. 638	Ent638_0563	-54	4.3	TATGTTGAGGTGGATCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3892	-83	3.7	AATCGTGATCGATTACACGTCC

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of Crp regulog to Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --