Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of KdgR regulog to Cronobacter turicensis z3032

Reference regulog properties
Source regulog: KdgR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: IclR
Regulation mode: repressor (activator)
Biological process: Pectin and polygalacturonate utlization
Effector: 2-keto-3-deoxygluconate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Cronobacter turicensis z3032
Orthologous TF(s) No orthologous TFs found
Regulated genes 16
Built upon 159 sites [see more]
Predicted regulatory interactions in Cronobacter turicensis z3032
Locus tag Position Score Sequence
Position: -32
Score: 6
Sequence: AAATGAAACGCTGTTTTATAT
Locus tag: Ctu_04940
Ctu_04940 -32 6 AAATGAAACGCTGTTTTATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjgK
Ortholog function: cytoplasmic protein involved in polygalacturonate utilization
Escherichia coli str. K-12 substr. MG1655 b4252 -35 6 AAATGAAACGTTGTTTTAATT
Salmonella typhimurium LT2 STM4468 -32 5.7 AAATAAAACGCTGTTTTAACT
Citrobacter koseri ATCC BAA-895 CKO_03553 -33 6.2 AAATGAAACGTTGTTTTATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04658 -33 5.8 AAATGAAATGCTGTTTTATAT
Enterobacter sp. 638 Ent638_0453 -34 6 AAATGAAACATTGTTTTATAT
Yersinia pestis KIM y0739 -41 5.9 TAATAAAACAGCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0383 -41 5.1 TTGTAAAACAGGGTTTCATTT
Edwardsiella tarda EIB202 ETAE_3112 -39 5.6 AAATAAAACGCAGTTTTATAA
Position: -107
Score: 5.6
Sequence: AATAAAAACAGCGTTTCATTA
Locus tag: Ctu_18620
Ctu_18620 -107 5.6 AATAAAAACAGCGTTTCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppsR
Ortholog function: PEP synthetase regulatory protein
Escherichia coli str. K-12 substr. MG1655 b1703 -131 5.3 AAATGAAATGCTGTTTTCATA
Salmonella typhimurium LT2 STM1348 -131 4.9 AAATGAAACACACTTTTCATT
Citrobacter koseri ATCC BAA-895 CKO_01727 -107 5.5 TATAAAAATAGCGTTTCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02161 -97 5.1 AACAAAAATAGCGTTTCAATT
Enterobacter sp. 638 Ent638_1744 -107 5.3 ATTAAAAACACCATTTCATTT
Serratia proteamaculans 568 Spro_2173 -134 5.2 ATTTGAAATAGTGTTTTACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1852 -94 5.6 TAATGAAATGGCGTTTTAATA
Position: -308
Score: 5.2
Sequence: TTATGAAACAGCGTTTTTAAT
Locus tag: Ctu_18790
Ctu_18790 -308 5.2 TTATGAAACAGCGTTTTTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pykF
Ortholog function: Pyruvate kinase (EC 2.7.1.40)
Escherichia coli str. K-12 substr. MG1655 b1676 -286 5 TTTTGAAACGCTGTTTTTGTT
Salmonella typhimurium LT2 STM1378 -286 4.7 TTTTGAAACAGGGTTTTCATT
Citrobacter koseri ATCC BAA-895 CKO_01709 -286 5 TTTTGAAACGCTGTTTTCATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02133 -285 5 ATTTGAAACGAGGTTTTTATT
Enterobacter sp. 638 Ent638_1768 -286 5.1 TTTTGAAACGCCGTTTCCATT
Serratia proteamaculans 568 Spro_2187 -203 4.1 AAtaacAACAcatTTTCATcT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1867 -259 5.1 ATACGGAACGTCGTTTCAATT
Position: -75
Score: 4.8
Sequence: CTTCGAAACGCTGTTTTATAA
Locus tag: Ctu_25690
Ctu_25690 -75 4.8 CTTCGAAACGCTGTTTTATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiT
Ortholog function: Rhamnogalacturonide transporter
Citrobacter koseri ATCC BAA-895 CKO_01081 -190 5.4 AATAGAAACGCTGTTTTATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02390 -200 4.9 AAGAGAAATGCTGTTTTATAA
Enterobacter sp. 638 Ent638_2444 -189 5.6 AAAAGAAACGCTGTTTTATAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3560 -167 4.7 AGTTAAAATGCCTTTTTATAA
Position: -72
Score: 5.7
Sequence: TTTTGAAACATTGTTTCATTA
Locus tag: Ctu_25970
Ctu_25970 -72 5.7 TTTTGAAACATTGTTTCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tpfX
Ortholog function: ThiJ/PfpI-family hypothetical protein
Salmonella typhimurium LT2 STM1931 -231 5.4 TTATGAAACATTGTTTCAGAT
Citrobacter koseri ATCC BAA-895 CKO_01049 -199 5.4 TTTTGAAATGATGTTTCATAT
Enterobacter sp. 638 Ent638_2477 -42 5 GGATGAAACGCTGTTTTAAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0102 -85 6.1 TAATAAAACATCGTTTCATTT
Position: -64
Score: 5.3
Sequence: TTTTAAAACAATCTTTCATTT
Locus tag: Ctu_26040
Ctu_26040 -64 5.3 TTTTAAAACAATCTTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: spiX
Ortholog function: predicted 5-keto-4-deoxyuronate isomerase
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1742 -54 5.1 AATTGAAATACAGTTTTAAAA
Position: -36
Score: 4.9
Sequence: ATTTGAAATGAGGTTTCAACT
Locus tag: Ctu_27000
Ctu_27000 -36 4.9 ATTTGAAATGAGGTTTCAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yeeO
Ortholog function: predicted multidrug efflux system, MATE family
Escherichia coli str. K-12 substr. MG1655 b1985 -7 4.9 ATTTGAAATGTGGTTTCACTT
Salmonella typhimurium LT2 STM2013 -7 5 TATTGAAATGTGGTTTCAACT
Citrobacter koseri ATCC BAA-895 CKO_00837 -7 4.9 ATTTGAAATGAGGTTTCAACT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02447 -40 5.1 ATTTGAAATGTTGTTTCAACA
Enterobacter sp. 638 Ent638_2574 -74 5 ATTTGAAATGTAGTTTCAACT
Yersinia pestis KIM y2593 -158 4.8 TCATGAAACTATGTTCCATTT
Serratia proteamaculans 568 Spro_3106 -39 5.2 ATTTGAAATGTTGTTTCACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2762 -140 5.1 AATAGAAACGTCATTTTAAAA
Position: -35
Score: 5.5
Sequence: AAATGAAACAACGTTTCACAA
Locus tag: Ctu_33970
Ctu_33970 -35 5.5 AAATGAAACAACGTTTCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgF
Ortholog function: Pectin degradation protein KdgF
Citrobacter koseri ATCC BAA-895 CKO_04218 -38 5.6 AGTTGAAACATTGTTTCAATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03255 -39 5.8 AAATGAAACAATGTTTCACTT
Enterobacter sp. 638 Ent638_3287 -38 5.5 AATTAAAACAATGTTTCACTA
Yersinia pestis KIM y1888 -155 6 AAATGAAATGATGTTTTATTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2399 -174 6.1 AAATGAAATAATGTTTTATTT
Position: -224
Score: 5.2
Sequence: AATTAAAACGCTGTTTTAGAA
Locus tag: Ctu_33990
Ctu_33990 -224 5.2 AATTAAAACGCTGTTTTAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: togM
Ortholog function: oligogalacturonide ABC transporter, inner membrane permease
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03256 -288 5 TTTTGAAACATCGTTTCGACT
-211 5.6 AATTAAAACGGTGTTTTATAA
Enterobacter sp. 638 Ent638_3289 -226 5.1 AATTAAAACGCCGTTTTACAA
Yersinia pestis KIM y1884 -152 4.5 AATCAAAACAACGTTCCGACT
-76 5.2 GATTGAAACGATGTTTCTATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2403 -139 4.5 AATCAAAACAACGTTCCGACT
-61 5.3 AATCAAAACAGTGTTTCTATT
Position: -230
Score: 6.3
Sequence: AAATGAAACAATGTTTTATTT
Locus tag: Ctu_34030
Ctu_34030 -230 6.3 AAATGAAACAATGTTTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kduD
Ortholog function: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
Escherichia coli str. K-12 substr. MG1655 b2842 -130 6.3 AAATGAAACATTGTTTTATTT
-63 5.4 AAACGAAACAGTGTTTCACTA
Salmonella typhimurium LT2 STM3017 -123 6.2 AAATGAAACGTTGTTTTATTT
-58 5.3 AATCAAAACAGTGTTTTGATT
Citrobacter koseri ATCC BAA-895 CKO_04219 -119 6.2 AAATGAAACAACGTTTTATTT
-51 4.4 AAACGGAACGGTGTTTCGCCT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03265 -207 5.8 AAATGAAACATCGTTTTAAAT
-139 5.2 AAACGGAACTCTGTTTTATTT
Enterobacter sp. 638 Ent638_3295 -127 5.4 AACTGAAACAACGTTTTAAAT
-60 5 AATCGGAACATTGTTTCGTTA
Position: -350
Score: 6.3
Sequence: AAATAAAACATTGTTTCATTT
Position: -84
Score: 5.2
Sequence: CAATGAAACACTGTTTTGATA
Locus tag: Ctu_34040
Ctu_34040 -350 6.3 AAATAAAACATTGTTTCATTT
-84 5.2 CAATGAAACACTGTTTTGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ogl
Ortholog function: Oligogalacturonate lyase (EC 4.2.2.6)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03266 -299 5.8 ATTTAAAACGATGTTTCATTT
-103 5.6 TAATGAAACAATGTTTTGATA
Enterobacter sp. 638 Ent638_3297 -105 5 CATTGAAACGTCGTTTTGATA
Position: -88
Score: 5.5
Sequence: AAATGAAACGCTGTTTTGGTT
Locus tag: Ctu_37240
Ctu_37240 -88 5.5 AAATGAAACGCTGTTTTGGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kduI
Ortholog function: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Escherichia coli str. K-12 substr. MG1655 b2843 -130 6.3 AAATGAAACATTGTTTTATTT
-63 5.4 AAACGAAACAGTGTTTCACTA
Salmonella typhimurium LT2 STM3018 -123 6.2 AAATGAAACGTTGTTTTATTT
-58 5.3 AATCAAAACAGTGTTTTGATT
Citrobacter koseri ATCC BAA-895 CKO_04220 -119 6.2 AAATGAAACAACGTTTTATTT
-51 4.4 AAACGGAACGGTGTTTCGCCT
Enterobacter sp. 638 Ent638_3296 -127 5.4 AACTGAAACAACGTTTTAAAT
-60 5 AATCGGAACATTGTTTCGTTA
Yersinia pestis KIM y1887 -201 6 TAATAAAACATCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2400 -209 6.1 AAATAAAACATTATTTCATTT
Edwardsiella tarda EIB202 ETAE_1898 -129 5.6 AATCAAAACAGCATTTCATTT
Position: -52
Score: 5.4
Sequence: AATCAAAACACCGTTTTATAA
Locus tag: Ctu_39810
Ctu_39810 -52 5.4 AATCAAAACACCGTTTTATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiA
Ortholog function: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit
Citrobacter koseri ATCC BAA-895 CKO_04899 -138 5.1 TTTTAAACCATCGTTTCAATT
-50 4.8 AACTAAAACAATGTTTTAACG
Enterobacter sp. 638 Ent638_3876 -134 4.5 TTTCAAACCATCGTTTCAAAA
-49 4.8 AACTAAAACAACGTTTTAACG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0357 -239 5.6 ATATAAAACAGCATTTCATAT
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